Hi Bronwyn,

Would it be possible for you to send us the label file? You may also try the latest freeview from FS 7.1.1. A lot of changes and fixes have been made since version 5.3.

Best,
Ruopeng

On Sep 18, 2020, at 2:03 AM, Bronwyn Overs <b.overs@neura.edu.au> wrote:

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Dear freesurfer mailing list,

I generated my own label file from a linear mixed effects model and now I want to view this label file on the surface of fsaverage using freeview. I am able to load the surface and label files successfully from the command line using the following:

freeview -f $SUBJECTS_DIR/fsaverage_mod/surf/lh.inflated:label=lh.volume.stack.R3B.fwhm20.lmem.final.200817.gender.FDR-0001.label

However, once freeview is open and the label file is loaded, I cannot see the label displayed on the surface (screenshot attached). I am currently using freesurfer version 5.3.0.
Can someone please tell me how to make the label file visible on the surface of fsaverage?

Kind regards,

Bronwyn Overs
Research Assistant

Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
M 0411 308 769 T +61 2 9399 1725


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