Hello,

I found a small bug in recent dev version bin quantifyHAsubregions.sh:
 leftVolFile="$resultsDirectory/$subjectName/mri/lh.${suffix}Volumes-${suffix}.v20.txt"
 rightVolFile="$resultsDirectory/$subjectName/mri/rh.${suffix}Volumes-${suffix}.v20.txt"


Should say
 leftVolFile="$resultsDirectory/$subjectName/mri/lh.${suffix}Volumes-${prefix}.v20.txt"
 rightVolFile="$resultsDirectory/$subjectName/mri/rh.${suffix}Volumes-${prefix}.v20.txt"


because as specified "T1" is the ${prefix} which is how the subfields file names end. Obviously, can flip suffix and prefix throughout so it is more intuitive. Seems to work fine after this adjustment.

Josh
--
Joshua C. Gray, PhD
Psychology Instructor
Center for Deployment Psychology