Hi Qijing,
Under the 'Freeview dev build' section on this wiki page you can download
an updated version of freeview.

http://freesurfer.net/fswiki/Download

-Louis

On Mon, 7 Jul 2014, Qijing Yu wrote:

> Hi Doug,
>
> By new version, do you mean v5.3.0?
>
> Qijing
>
>
> On Mon, Jul 7, 2014 at 11:31 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu>
> wrote:
>
>       Yea, that is actually a feature in the new version
>
>
>       On 07/02/2014 02:17 PM, Joshua S wrote:
>       > Hi all,
>       > I was following the group analysis tutorial when I got an
>       error when
>       > trying to view the uncorrected significance map with freeview.
>       I used
>       > the command "freeview -f
>       >$SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:overlay=lh.gende
>       r_age.glmdir/lh-Avg-thickness-age-Cor/sig.mgh:overlay_threshold=4,5
>       > -viewport 3d". I removed the annot_outline=1, because it gave
>       an
>       > error. Sig.mgh would not load, and I would get the attached
>       image. I
>       > tried to manually add sig.mgh through add surface, but the
>       program
>       > immediatley closed, and I got the message in the attached
>       error.log.
>       > Text below.
>       >
>       > Thank you for any help,
>       > Josh
>       > Did not find any volume geometry information in the surface

>       > ???Tgreading colortable from annotation file...

>       > colortable with 36 entries read (originally
>       >/autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan
>       _killiany.txt)
>       > colortable with 36 entries read (originally
>       >/autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan
>       _killiany.txt)

>       > Did not find color table in track volume.
>       > [0]PETSC ERROR:
>       >
>       ------------------------------------------------------------------------
>       > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation
>       Violation,
>       > probably memory access out of range
>       > [0]PETSC ERROR: Try option -start_in_debugger or
>       -on_error_attach_debugger
>       > [0]PETSC ERROR: or see
>       >http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Si
>       gnal[0]PETSC
>       > ERROR: or try http://valgrind.org on linux or man libgmalloc
>       on Apple
>       > to find memory corruption errors
>       > [0]PETSC ERROR: configure using --with-debugging=yes,
>       recompile, link,
>       > and run
>       > [0]PETSC ERROR: to get more information on the crash.
>       > [0]PETSC ERROR: --------------------- Error Message
>       > ------------------------------------
>       > [0]PETSC ERROR: Signal received!
>       > [0]PETSC ERROR:
>       >
>       ------------------------------------------------------------------------
>       > [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May
>       15
>       > 17:29:26 CDT 2008 HG revision:
>       4466c6289a0922df26e20626fd4a0b4dd03c8124
>       > [0]PETSC ERROR: See docs/changes/index.html for recent
>       updates.
>       > [0]PETSC ERROR: See docs/faq.html for hints about trouble
>       shooting.
>       > [0]PETSC ERROR: See docs/index.html for manual pages.
>       > [0]PETSC ERROR:
>       >
>       ------------------------------------------------------------------------
>       > [0]PETSC ERROR: Unknown Name on a linux-gnu named
> > farklemt.nmr.mgh.harvard.edu <http://farklemt.nmr.mgh.harvard.edu>
> by
> > dc325 Wed Jul 2 11:35:56 2014
> > [0]PETSC ERROR: Libraries linked from
> >/autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/petsc/2.3.3-p13/src
> /petsc-2.3.3-p13/lib/linux-gnu-c-opt
> > [0]PETSC ERROR: Configure run at Tue Aug 10 15:01:59 2010
> > [0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc
> > --with-fc=g77 --download-f-blas-lapack=0 --download-mpich=1
> > --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0
> > COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3
> > [0]PETSC ERROR:
> >
> ------------------------------------------------------------------------
> > [0]PETSC ERROR: User provided function() line 0 in unknown directory
> > unknown file
> > [unset]: aborting job:
> > application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> >
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
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