Hi Yang

The input to recon-all should be a T1-weighted MRI volume. I think what you are giving it instead is a label volume

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Man YANG
Sent: Wednesday, June 14, 2023 6:52 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Error: MRInormFindControlPoints: could not find enough control points

External Email - Use Caution

Dear Freesurfer experts,

I was trying this command: $ recon-all -s Desikan -i /path/to/nii -all, to generate the anno files.

But it ends up with the errors of MRInormFindControlPoints: could not find enough control points

The .nii file I am using is the volume of Desikan (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://neurovault.org/media/images/1446/aparcaseg.nii.gz)

I’m using FS v7.1.1, macOS Ventura 13.4. Any ideas how I can solve this?

Enclosed please find the recon-all.log

Thank you so much!

Yang