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Dear Sevan,

Which version of FreeSurfer are you running on which system (Mac, Linux?), and what is the exact command line and error message?

In case it is about nu_correct not being found: it should be in $FREESURFER_HOME/mni/bin/nu_correct, and if you get that error, most likely your environment variable $FREESURFER_HOME is not setup correctly for your shell.

Please also report the output of these 2 commands so we can know more:

1) echo $FREESURFER_HOME
2) ls -l $FREESURFER_HOME/mni/bin/nu_correct

Best,

Tim

> On April 1, 2019 at 2:22 AM Sevan Harootonian <skharootonian@ucdavis.edu> wrote:
>
>
>         External Email - Use Caution       
>
> Hello Freesurfers,
>
> I'm running recond-all and getting ERROR: nu_correct. I see a lot of people
> online have had this problem but I've failed to found a solution. Any
> suggestions?
>
> I'm running freesurfer on a virtual machine and I've attached
> my recon-all.log
>
> thanks,
> sev
>
> --
>
> Sevan Harootonian
> research specialist
>
> Ekstrom's Lab
> University of Arizona Psychology Department
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--
Dr. Tim Schäfer
Postdoc Computational Neuroimaging
Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy
University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany

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