Thu Apr 11 10:45:38 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data /usr/local/freesurfer5.1/bin/trac-all -prep -c dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 888M wired, 3031M active, 558M inactive, 4476M used, 7799M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/04/11-15:45:39-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-15:45:39-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-15:45:39-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-15:45:39-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-15:45:39-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 886M wired, 3034M active, 558M inactive, 4478M used, 7801M free. #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Thu Apr 11 10:45:41 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dti/orig/N1064-dti.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dti/orig/N1064-dti.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dti/orig/N1064-dti.nii.gz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0003 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0004 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0005 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0006 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0007 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0008 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0009 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0010 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0011 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0012 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0013 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs.norot xfmrot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.ecclog /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs.norot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs fslroi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz 0 2 fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz -Tmean /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz bet /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff #------------------------------------- #@# Intra-subject registration Thu Apr 11 10:48:00 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz... flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz --targ /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl target volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain_anat.flt.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.flt.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.log Thu Apr 11 10:48:43 CDT 2013 setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data /usr/local/freesurfer/bin/bbregister --s freesurfer --init-fsl --dti --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --fslmat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 FREESURFER_HOME /usr/local/freesurfer5.1 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii... fslregister --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister --dof 6 Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat.fslregister.log Thu Apr 11 10:48:44 CDT 2013 --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister --dof 6 $Id: fslregister,v 1.29.2.1 2010/08/04 15:50:56 nicks Exp $ cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 nIters 1 -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/refvol.fslregister.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/refvol.fslregister.nii... -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii --frame 0 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii... /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/reg0.23203.dat --regheader --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat.fsl.mat0 --s freesurfer --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/reg0.23203.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 4.500; 0.000 0.000 1.000 -20.500; 0.000 -1.000 0.000 4.500; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 4.500; 0.000 0.000 1.000 -20.500; 0.000 -1.000 0.000 4.500; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.000 4.500; 0.000 0.000 1.000 -20.500; 0.000 -1.000 0.000 4.500; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -64, ref det = -1 Thu Apr 11 10:48:49 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/fslregister/movvol.fslregister.nii -bins 256 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat.fsl.mat -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -schedule /usr/local/freesurfer5.1/bin/flirt.newdefault.20080811.sch -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat.fsl.mat0 tkregister2_cmdl --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat --fslreg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl ---- FSL registration matrix -------- 0.999 0.013 -0.037 0.428; -0.037 -0.016 -0.999 172.278; -0.014 1.000 -0.015 0.710; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -64, ref det = -1 ---- Input registration matrix (computed) -------- 0.999 0.014 -0.037 0.665; 0.037 -0.015 0.999 -22.428; 0.013 -1.000 -0.016 -1.661; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.999 0.014 -0.037 0.665; 0.037 -0.015 0.999 -22.428; 0.013 -1.000 -0.016 -1.661; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 0.999 0.014 -0.037 0.665; 0.037 -0.015 0.999 -22.428; 0.013 -1.000 -0.016 -1.661; 0.000 0.000 0.000 1.000; Started at Thu Apr 11 10:48:44 CDT 2013 Ended at Thu Apr 11 10:49:11 CDT 2013 fslregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat --surf orig mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.init.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1365743244 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.999 0.014 -0.037 0.665; 0.037 -0.015 0.999 -22.428; 0.013 -1.000 -0.016 -1.661; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.024765 1 -25.0 -25.0 25.0 1.092152 2 -25.0 25.0 -25.0 1.060127 3 -25.0 25.0 25.0 1.039533 4 25.0 -25.0 -25.0 1.036699 5 25.0 -25.0 25.0 1.032704 6 25.0 25.0 -25.0 1.059769 7 25.0 25.0 25.0 1.057898 REL: 8 0.680143 8.403647 1.050456 rel = 0.647474 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9940 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.6475 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9914 0.9914 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9531 0.9531 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9394 0.9394 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9336 0.9336 0.0 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9321 0.9321 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.9223 0.9223 0.0 31 -4.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.9022 0.9022 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8636 0.8636 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.8445 0.8445 0.0 150 -4.0000 0.0000 4.0000 0.0000 4.0000 -4.0000 0.8385 0.8385 0.0 273 0.0000 -4.0000 0.0000 -4.0000 0.0000 -4.0000 0.8207 0.8207 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7927 0.7927 0.0 282 0.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.7917 0.7917 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.7732 0.7732 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7186 0.7186 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6889 0.6889 0.0 391 0.0000 0.0000 4.0000 0.0000 0.0000 0.0000 0.6824 0.6824 0.0 Brute Force -------------------------- Min cost was 0.682426 Number of iterations 729 Search time 1.622000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 4.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 4 3 0 4 0 5 0 6 0.382 0.000 4.000 0.000 0.000 0.000 0.6775949712 7 0.566 0.000 4.000 0.000 0.000 0.000 0.6770973215 11 0.569 0.000 4.000 0.000 0.000 0.000 0.6770971090 14 0.568 0.000 4.000 0.000 0.000 0.000 0.6770970516 18 0.568 0.000 4.000 0.000 0.000 0.000 0.6758628224 21 0.568 0.171 4.000 0.000 0.000 0.000 0.6746514391 27 0.568 0.170 2.382 0.000 0.000 0.000 0.6491645027 33 0.568 0.170 2.299 0.000 0.000 0.000 0.6488275314 35 0.568 0.170 2.214 0.000 0.000 0.000 0.6485597930 37 0.568 0.170 2.196 0.000 0.000 0.000 0.6485225684 38 0.568 0.170 2.183 0.000 0.000 0.000 0.6485217486 39 0.568 0.170 2.189 0.000 0.000 0.000 0.6485183023 40 0.568 0.170 2.190 0.000 0.000 0.000 0.6485178709 44 0.568 0.170 2.190 1.000 0.000 0.000 0.6459224620 48 0.568 0.170 2.190 0.618 0.000 0.000 0.6456711695 50 0.568 0.170 2.190 0.705 0.000 0.000 0.6451236441 52 0.568 0.170 2.190 0.747 0.000 0.000 0.6451215401 53 0.568 0.170 2.190 0.727 0.000 0.000 0.6451153607 55 0.568 0.170 2.190 0.733 0.000 0.000 0.6451132145 57 0.568 0.170 2.190 0.734 0.000 0.000 0.6451131372 58 0.568 0.170 2.190 0.735 0.000 0.000 0.6451127578 67 0.568 0.170 2.190 0.735 0.001 0.000 0.6451126307 71 0.568 0.170 2.190 0.735 0.001 -1.618 0.6261140445 91 0.568 0.170 2.190 0.735 0.001 -1.835 0.6259235920 95 -0.050 0.170 2.190 0.735 0.001 -1.835 0.6232256752 100 -0.062 0.170 2.190 0.735 0.001 -1.835 0.6232189927 103 -0.065 0.170 2.190 0.735 0.001 -1.835 0.6232180072 105 -0.069 0.170 2.190 0.735 0.001 -1.835 0.6232170634 108 -0.070 0.170 2.190 0.735 0.001 -1.835 0.6232168780 113 -0.070 -0.448 2.190 0.735 0.001 -1.835 0.6152874347 115 -0.070 -0.594 2.190 0.735 0.001 -1.835 0.6149240627 116 -0.070 -0.598 2.190 0.735 0.001 -1.835 0.6149126630 117 -0.070 -0.687 2.190 0.735 0.001 -1.835 0.6146337695 119 -0.070 -0.669 2.190 0.735 0.001 -1.835 0.6146090054 121 -0.070 -0.671 2.190 0.735 0.001 -1.835 0.6146087334 122 -0.070 -0.672 2.190 0.735 0.001 -1.835 0.6146086793 130 -0.070 -0.672 2.091 0.735 0.001 -1.835 0.6144542198 132 -0.070 -0.672 2.114 0.735 0.001 -1.835 0.6144412301 134 -0.070 -0.672 2.113 0.735 0.001 -1.835 0.6144411276 138 -0.070 -0.672 2.113 0.735 0.001 -1.835 0.6144224244 141 -0.070 -0.672 2.113 0.468 0.001 -1.835 0.6137216743 142 -0.070 -0.672 2.113 0.488 0.001 -1.835 0.6136943846 143 -0.070 -0.672 2.113 0.520 0.001 -1.835 0.6136687868 156 -0.070 -0.672 2.113 0.520 0.383 -1.835 0.6116840118 158 -0.070 -0.672 2.113 0.520 0.379 -1.835 0.6116810601 160 -0.070 -0.672 2.113 0.520 0.374 -1.835 0.6116777854 167 -0.070 -0.672 2.113 0.520 0.374 -1.835 0.6116384862 170 -0.070 -0.672 2.113 0.520 0.374 -1.677 0.6115658193 171 -0.070 -0.672 2.113 0.520 0.374 -1.717 0.6115233770 172 -0.070 -0.672 2.113 0.520 0.374 -1.738 0.6115047516 174 -0.070 -0.672 2.113 0.520 0.374 -1.745 0.6115002372 176 -0.070 -0.672 2.113 0.520 0.374 -1.750 0.6114988126 185 0.312 -0.672 2.113 0.520 0.374 -1.750 0.6110926645 186 0.158 -0.672 2.113 0.520 0.374 -1.750 0.6104376722 188 0.155 -0.672 2.113 0.520 0.374 -1.750 0.6104376490 189 0.154 -0.672 2.113 0.520 0.374 -1.750 0.6104376347 217 0.154 -0.608 2.122 0.520 0.374 -1.750 0.6103769707 221 0.154 -0.608 2.122 0.501 0.374 -1.750 0.6103616376 222 0.154 -0.608 2.122 0.493 0.374 -1.750 0.6103546513 224 0.154 -0.608 2.122 0.482 0.374 -1.750 0.6103514144 228 0.154 -0.608 2.122 0.480 0.374 -1.750 0.6103512213 229 0.154 -0.608 2.122 0.479 0.374 -1.750 0.6103511522 239 0.154 -0.608 2.122 0.479 0.381 -1.750 0.6103475354 242 0.154 -0.608 2.122 0.479 0.382 -1.750 0.6103470922 243 0.154 -0.608 2.122 0.479 0.384 -1.750 0.6103467633 251 0.154 -0.608 2.122 0.479 0.384 -1.629 0.6102892132 252 0.154 -0.608 2.122 0.479 0.384 -1.627 0.6102822889 253 0.154 -0.608 2.122 0.479 0.384 -1.528 0.6102341391 254 0.154 -0.608 2.122 0.479 0.384 -1.568 0.6101836281 256 0.154 -0.608 2.122 0.479 0.384 -1.567 0.6101835679 262 0.154 -0.608 2.122 0.479 0.384 -1.567 0.6101693436 269 0.167 -0.608 2.122 0.479 0.384 -1.567 0.6101579217 270 0.179 -0.608 2.122 0.479 0.384 -1.567 0.6101535004 271 0.181 -0.608 2.122 0.479 0.384 -1.567 0.6101533263 277 0.182 -0.608 2.122 0.479 0.384 -1.567 0.6100398560 281 0.182 -0.552 2.122 0.479 0.384 -1.567 0.6100027355 283 0.182 -0.574 2.122 0.479 0.384 -1.567 0.6099732889 284 0.182 -0.575 2.122 0.479 0.384 -1.567 0.6099724127 295 0.182 -0.575 2.107 0.479 0.384 -1.567 0.6099706646 298 0.182 -0.575 2.097 0.479 0.384 -1.567 0.6099700939 299 0.182 -0.575 2.098 0.479 0.384 -1.567 0.6099700264 300 0.182 -0.575 2.099 0.479 0.384 -1.567 0.6099699577 306 0.182 -0.575 2.100 0.479 0.384 -1.567 0.6099045395 412 0.174 -0.563 2.102 0.470 0.427 -1.582 0.6098987536 490 0.170 -0.559 2.097 0.465 0.425 -1.582 0.6098966538 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 1.031259 1 -25.0 -25.0 25.0 1.077281 2 -25.0 25.0 -25.0 1.064715 3 -25.0 25.0 25.0 1.034135 4 25.0 -25.0 -25.0 1.044449 5 25.0 -25.0 25.0 1.023048 6 25.0 25.0 -25.0 1.052602 7 25.0 25.0 25.0 1.057426 REL: 8 0.610211 8.384915 1.048114 rel = 0.582199 Number of iterations 5 Min cost was 0.612165 Number of FunctionCalls 501 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.095000 sec Parameters at optimum (transmm) 0.17031 -0.55854 2.09728 Parameters at optimum (rotdeg) 0.46548 0.42475 -1.58211 Costs at optimum 3846 1.6127 0.5682 17.7511 1.6984 0.6186 4.1959 0.6122 Reg at min cost was 1.000 0.006 -0.009 0.203; 0.009 -0.007 1.000 -22.981; 0.006 -1.000 -0.007 0.249; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat, type = 14 Original Reg 0.999 0.014 -0.037 0.665; 0.037 -0.015 0.999 -22.428; 0.013 -1.000 -0.016 -1.661; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.001 0.008 -0.028 0.462; 0.028 -0.008 -0.001 0.554; 0.007 0.000 -0.008 -1.910; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 2.425541 Computing change in rh position Surface RMS Diff (mm) 2.474142 3.256914 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.23159/bbr.pass1.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1366211721 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.006 -0.009 0.203; 0.009 -0.007 1.000 -22.981; 0.006 -1.000 -0.007 0.249; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.030031 1 -25.0 -25.0 25.0 1.076862 2 -25.0 25.0 -25.0 1.063930 3 -25.0 25.0 25.0 1.035347 4 25.0 -25.0 -25.0 1.066452 5 25.0 -25.0 25.0 1.051668 6 25.0 25.0 -25.0 1.046136 7 25.0 25.0 25.0 1.075556 REL: 8 0.603368 8.445981 1.055748 rel = 0.571507 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9932 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.5715 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.6122 0.6122 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.6122 0.6122 0.0 251 0.0000 -0.1000 -0.1000 -0.1000 0.1000 0.1000 0.6122 0.6122 0.0 256 0.0000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.6121 0.6121 0.0 260 0.0000 -0.1000 -0.1000 0.0000 0.1000 0.1000 0.6121 0.6121 0.0 283 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.6120 0.6120 0.0 287 0.0000 -0.1000 0.0000 0.0000 0.1000 0.1000 0.6120 0.6120 0.0 328 0.0000 0.0000 -0.1000 -0.1000 0.0000 0.0000 0.6120 0.6120 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.6118 0.6118 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6116 0.6116 0.0 Brute Force -------------------------- Min cost was 0.611645 Number of iterations 729 Search time 1.504000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 0.008 0.000 0.000 0.000 0.000 0.000 0.6123768476 8 0.023 0.000 0.000 0.000 0.000 0.000 0.6123751316 10 0.018 0.000 0.000 0.000 0.000 0.000 0.6123747282 16 0.017 0.000 0.000 0.000 0.000 0.000 0.6121955204 19 0.017 0.118 0.000 0.000 0.000 0.000 0.6119720558 21 0.017 0.109 0.000 0.000 0.000 0.000 0.6119707757 30 0.017 0.110 -0.116 0.000 0.000 0.000 0.6118356965 31 0.017 0.110 -0.119 0.000 0.000 0.000 0.6118354646 32 0.017 0.110 -0.122 0.000 0.000 0.000 0.6118354031 40 0.017 0.110 -0.121 0.128 0.000 0.000 0.6117245987 41 0.017 0.110 -0.121 0.127 0.000 0.000 0.6117244592 42 0.017 0.110 -0.121 0.120 0.000 0.000 0.6117243146 44 0.017 0.110 -0.121 0.123 0.000 0.000 0.6117242084 53 0.017 0.110 -0.121 0.122 0.152 0.000 0.6113889057 54 0.017 0.110 -0.121 0.122 0.151 0.000 0.6113888532 63 0.017 0.110 -0.121 0.122 0.150 -0.212 0.6110540965 65 0.017 0.110 -0.121 0.122 0.150 -0.207 0.6110534259 74 0.017 0.110 -0.121 0.122 0.150 -0.207 0.6110376588 80 -0.039 0.110 -0.121 0.122 0.150 -0.207 0.6110108568 81 -0.028 0.110 -0.121 0.122 0.150 -0.207 0.6110081636 82 -0.026 0.110 -0.121 0.122 0.150 -0.207 0.6110080577 83 -0.025 0.110 -0.121 0.122 0.150 -0.207 0.6110080469 92 -0.024 0.110 -0.121 0.122 0.150 -0.207 0.6108947726 95 -0.024 0.147 -0.121 0.122 0.150 -0.207 0.6108644324 96 -0.024 0.155 -0.121 0.122 0.150 -0.207 0.6108626101 97 -0.024 0.160 -0.121 0.122 0.150 -0.207 0.6108622853 107 -0.024 0.158 -0.105 0.122 0.150 -0.207 0.6108604704 128 -0.024 0.158 -0.107 0.147 0.190 -0.207 0.6108385826 129 -0.024 0.158 -0.107 0.147 0.199 -0.207 0.6108371252 130 -0.024 0.158 -0.107 0.147 0.201 -0.207 0.6108371198 132 -0.024 0.158 -0.107 0.147 0.200 -0.207 0.6108370879 142 -0.024 0.158 -0.107 0.147 0.200 -0.256 0.6108363729 143 -0.024 0.158 -0.107 0.147 0.200 -0.254 0.6108356945 144 -0.024 0.158 -0.107 0.147 0.200 -0.250 0.6108339452 145 -0.024 0.158 -0.107 0.147 0.200 -0.243 0.6108317102 146 -0.024 0.158 -0.107 0.147 0.200 -0.239 0.6108306941 147 -0.024 0.158 -0.107 0.147 0.200 -0.236 0.6108301732 148 -0.024 0.158 -0.107 0.147 0.200 -0.234 0.6108299435 149 -0.024 0.158 -0.107 0.147 0.200 -0.233 0.6108298131 185 -0.051 0.173 -0.102 0.154 0.215 -0.244 0.6108263243 189 -0.051 0.173 -0.102 0.154 0.215 -0.268 0.6108249826 190 -0.051 0.173 -0.102 0.154 0.215 -0.257 0.6108204774 191 -0.051 0.173 -0.102 0.154 0.215 -0.256 0.6108201523 192 -0.051 0.173 -0.102 0.154 0.215 -0.251 0.6108187073 193 -0.051 0.173 -0.102 0.154 0.215 -0.248 0.6108180006 194 -0.051 0.173 -0.102 0.154 0.215 -0.247 0.6108177119 195 -0.051 0.173 -0.102 0.154 0.215 -0.246 0.6108175736 211 -0.051 0.173 -0.102 0.152 0.215 -0.246 0.6107910625 216 -0.051 0.173 -0.102 0.144 0.215 -0.246 0.6107903511 217 -0.051 0.173 -0.102 0.143 0.215 -0.246 0.6107903499 234 -0.051 0.173 -0.102 0.142 0.214 -0.246 0.6107852637 237 -0.046 0.168 -0.104 0.139 0.208 -0.243 0.6107846988 245 -0.046 0.167 -0.104 0.138 0.208 -0.242 0.6107846656 252 -0.047 0.167 -0.104 0.138 0.208 -0.242 0.6107846619 Powell done niters = 36 Computing relative cost 0 -25.0 -25.0 -25.0 1.030361 1 -25.0 -25.0 25.0 1.076948 2 -25.0 25.0 -25.0 1.065317 3 -25.0 25.0 25.0 1.035652 4 25.0 -25.0 -25.0 1.067113 5 25.0 -25.0 25.0 1.050987 6 25.0 25.0 -25.0 1.046521 7 25.0 25.0 25.0 1.074457 REL: 8 0.610798 8.447356 1.055919 rel = 0.578451 Number of iterations 36 Min cost was 0.610979 Number of FunctionCalls 2832 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 574.425000 sec Parameters at optimum (transmm) -0.04690 0.16470 -0.10965 Parameters at optimum (rotdeg) 0.13879 0.21123 -0.24117 Costs at optimum 384146 1.6154 0.5743 17.3086 1.7045 0.6239 4.4998 0.6110 Reg at min cost was 1.000 0.003 -0.005 0.060; 0.005 -0.005 1.000 -22.818; 0.003 -1.000 -0.005 0.083; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.006 -0.009 0.203; 0.009 -0.007 1.000 -22.981; 0.006 -1.000 -0.007 0.249; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.004 -0.004 0.143; 0.004 -0.002 -0.000 -0.164; 0.004 0.000 -0.002 0.166; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.345700 Computing change in rh position Surface RMS Diff (mm) 0.348808 0.657544 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.003 -0.005 0.060; 0.005 -0.005 1.000 -22.818; 0.003 -1.000 -0.005 0.083; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.003 -0.005 0.060; 0.005 -0.005 1.000 -22.818; 0.003 -1.000 -0.005 0.083; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.003 -0.005 0.060; 0.005 -0.005 1.000 -22.818; 0.003 -1.000 -0.005 0.083; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -64, ref det = -1 Cleaning up Started at Thu Apr 11 10:48:43 CDT 2013 Ended at Thu Apr 11 10:59:28 CDT 2013 BBR-Run-Time-Sec 645 bbregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Thu Apr 11 10:59:28 CDT 2013 flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_mni.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2anat.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2mni.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Thu Apr 11 11:01:53 CDT 2013 mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 616817 values in range Counting number of voxels Found 616817 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 651504 values in range Counting number of voxels Found 651504 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 25787 values in range Counting number of voxels Found 25787 voxels in final mask mri_binarize done mri_aparc2aseg --s freesurfer --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data subject freesurfer outvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/lh.white Reading lh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/lh.pial Loading lh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/rh.white Reading rh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/rh.pial Loading rh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/ribbon.mgz Loading filled from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1121128 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 9 clusters 0 k 10.000000 1 k 2.000000 2 k 4.000000 3 k 1.000000 4 k 1052.000000 5 k 1.000000 6 k 2.000000 7 k 5.000000 8 k 1.000000 Fixing Parahip RH WM Found 13 clusters 0 k 1.000000 1 k 729.000000 2 k 1.000000 3 k 4.000000 4 k 2.000000 5 k 1.000000 6 k 1.000000 7 k 2.000000 8 k 3.000000 9 k 4.000000 10 k 1.000000 11 k 2.000000 12 k 1.000000 Writing output aseg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 536936 values in range Counting number of voxels Found 536936 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 914907 values in range Counting number of voxels Found 914907 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 23608 values in range Counting number of voxels Found 23608 voxels in final mask mri_binarize done fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz -add /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz -mul /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz x z -y 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_MO.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_S0.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Thu Apr 11 11:10:56 CDT 2013 /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.21701.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.21701.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt Training subject directory list: /private/tmp/subj23.freesurfer.21701.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 321 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 5620 total streamlines (min/mean/max length: 63/100/132) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 3479 non-truncated streamlines (min/mean/max length: 66/101/132) INFO: Center of mass of start points: (97+/-4, 97+/-6, 37+/-12) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 76+/-6) INFO: Center of mass of end points: (113+/-8, 107+/-9, 142+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 35723 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 100 99 38 100 103 50 113 110 84 113 104 119 113 105 141 INFO: Distances between consecutive points are 13 37 36 22 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 241.624 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 212 streamlines for straying off mask INFO: Rejected 1008 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4843 total streamlines (min/mean/max length: 50/98/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2994 non-truncated streamlines (min/mean/max length: 52/98/137) INFO: Center of mass of start points: (78+/-8, 99+/-9, 67+/-46) INFO: Center of mass of midpoints: (81+/-3, 99+/-6, 45+/-14) INFO: Center of mass of end points: (71+/-10, 101+/-9, 115+/-45) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38236 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 101 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 100 37 79 101 41 76 105 58 64 110 82 69 104 142 INFO: Distances between consecutive points are 4 18 27 61 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 164.552 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 78 streamlines for straying off mask INFO: Rejected 51 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 2199 total streamlines (min/mean/max length: 54/93/129) Processing pathway 3 of 18... Matching streamline ends INFO: Have 982 non-truncated streamlines (min/mean/max length: 54/101/129) INFO: Center of mass of start points: (125+/-16, 102+/-46, 51+/-16) INFO: Center of mass of midpoints: (134+/-6, 130+/-3, 45+/-7) INFO: Center of mass of end points: (121+/-16, 76+/-45, 63+/-20) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 29578 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 116 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 138 41 132 110 56 130 82 69 118 53 73 116 33 53 INFO: Distances between consecutive points are 32 31 32 28 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 134 128 43 133 102 62 132 86 66 123 70 73 109 43 67 INFO: Distances between consecutive points are 32 17 20 31 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 56.913 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 68 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1173 total streamlines (min/mean/max length: 52/94/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 533 non-truncated streamlines (min/mean/max length: 58/103/133) INFO: Center of mass of start points: (51+/-11, 126+/-35, 45+/-13) INFO: Center of mass of midpoints: (48+/-6, 133+/-3, 43+/-6) INFO: Center of mass of end points: (65+/-13, 58+/-35, 70+/-17) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 20337 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 44 144 40 47 117 51 48 90 63 61 64 75 76 41 64 INFO: Distances between consecutive points are 29 30 31 30 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 47 147 42 47 122 50 46 96 60 56 70 72 72 37 75 INFO: Distances between consecutive points are 26 28 30 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 122 52 45 94 62 60 66 75 77 35 79 INFO: Distances between consecutive points are 27 30 34 36 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 112 56 49 87 66 61 62 75 71 40 64 INFO: Distances between consecutive points are 29 27 29 27 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 46 147 42 47 122 50 46 96 60 58 69 72 75 42 76 INFO: Distances between consecutive points are 26 28 32 32 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 122 52 45 95 62 60 66 75 77 35 79 INFO: Distances between consecutive points are 27 29 35 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 110 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 121 54 45 92 63 60 65 75 77 35 79 INFO: Distances between consecutive points are 29 31 33 35 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 41 136 39 48 111 56 49 86 66 61 62 75 71 40 65 INFO: Distances between consecutive points are 31 27 28 26 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 47 147 42 47 132 42 47 86 63 57 70 72 73 45 75 INFO: Distances between consecutive points are 15 51 21 30 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 120.602 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 955 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3318 total streamlines (min/mean/max length: 22/62/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 2382 non-truncated streamlines (min/mean/max length: 22/63/101) INFO: Center of mass of start points: (119+/-13, 151+/-14, 49+/-10) INFO: Center of mass of midpoints: (128+/-4, 131+/-2, 45+/-3) INFO: Center of mass of end points: (120+/-13, 149+/-13, 50+/-10) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 19675 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 131 141 44 130 125 48 122 128 62 111 143 62 109 157 55 INFO: Distances between consecutive points are 17 16 19 16 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 64 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 121 147 39 127 132 43 125 124 57 118 139 62 108 158 59 INFO: Distances between consecutive points are 17 16 17 22 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 108 162 57 109 145 60 119 128 62 127 128 47 126 148 41 INFO: Distances between consecutive points are 17 20 17 21 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 129 143 39 128 129 46 125 129 62 115 141 60 110 157 59 INFO: Distances between consecutive points are 16 16 16 17 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 129 142 40 128 126 51 123 135 63 111 148 62 119 156 53 INFO: Distances between consecutive points are 19 16 18 14 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 108 162 58 110 149 61 121 135 61 128 124 52 130 140 45 INFO: Distances between consecutive points are 13 18 16 18 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 130 141 41 128 128 49 125 130 62 116 140 60 110 157 59 INFO: Distances between consecutive points are 15 13 14 18 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 108 162 57 109 145 60 119 128 62 126 129 48 124 148 43 INFO: Distances between consecutive points are 17 20 16 20 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 108 162 57 109 145 60 119 128 62 126 130 47 123 149 43 INFO: Distances between consecutive points are 17 20 17 20 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 108 162 57 108 150 59 120 126 62 129 127 48 130 146 44 INFO: Distances between consecutive points are 12 27 17 19 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 81.807 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 115 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 7 streamlines as length outliers INFO: Have 5515 total streamlines (min/mean/max length: 9/65/103) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3658 non-truncated streamlines (min/mean/max length: 9/66/103) INFO: Center of mass of start points: (59+/-11, 151+/-14, 47+/-9) INFO: Center of mass of midpoints: (53+/-4, 133+/-3, 45+/-3) INFO: Center of mass of end points: (66+/-12, 157+/-16, 52+/-9) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 24155 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 55 145 40 52 129 47 59 132 62 74 151 64 77 172 59 INFO: Distances between consecutive points are 18 17 24 22 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 141.553 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 942 streamlines for straying off mask INFO: Rejected 216 streamlines for reversing direction INFO: Rejected 57 streamlines as length outliers INFO: Have 6282 total streamlines (min/mean/max length: 79/130/159) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4814 non-truncated streamlines (min/mean/max length: 79/132/159) INFO: Center of mass of start points: (89+/-15, 39+/-9, 101+/-15) INFO: Center of mass of midpoints: (106+/-5, 45+/-9, 94+/-12) INFO: Center of mass of end points: (88+/-15, 39+/-9, 102+/-15) INFO: Split streamlines into 34 segments Computing path histograms INFO: Total streamline volume is 56987 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 59 66 92 90 91 83 116 63 89 99 37 105 INFO: Distances between consecutive points are 33 41 39 35 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 42 103 59 65 92 90 91 83 117 62 89 98 36 104 INFO: Distances between consecutive points are 32 41 40 36 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 103 59 65 92 91 91 83 117 61 88 98 34 104 INFO: Distances between consecutive points are 33 42 40 37 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 60 89 95 88 84 67 70 87 76 37 99 INFO: Distances between consecutive points are 33 34 33 36 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 104 59 66 92 90 91 83 117 62 89 98 34 105 INFO: Distances between consecutive points are 34 41 40 37 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 62 70 84 92 91 84 116 61 89 95 39 105 INFO: Distances between consecutive points are 38 37 39 34 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 40 100 67 68 87 91 89 83 114 61 88 98 45 114 INFO: Distances between consecutive points are 32 32 37 34 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 39 101 63 71 86 93 86 82 118 60 87 98 38 111 INFO: Distances between consecutive points are 37 34 36 38 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 40 100 67 68 86 92 88 83 114 61 88 98 45 114 INFO: Distances between consecutive points are 33 32 35 34 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 41 98 113 71 85 85 91 84 66 64 87 78 40 102 INFO: Distances between consecutive points are 34 34 33 31 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 35 100 115 58 88 95 90 84 65 74 85 78 46 106 INFO: Distances between consecutive points are 33 38 34 37 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 45 106 63 69 85 91 90 84 116 62 89 95 34 101 INFO: Distances between consecutive points are 35 35 38 37 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 64 61 87 83 91 85 113 71 86 103 40 99 INFO: Distances between consecutive points are 33 36 36 35 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 35 98 116 62 89 93 90 84 62 72 84 76 42 105 INFO: Distances between consecutive points are 35 37 36 39 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 40 102 64 73 85 98 86 81 114 55 85 96 41 112 INFO: Distances between consecutive points are 40 37 35 35 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 39 101 66 64 87 85 91 84 112 71 85 103 41 98 INFO: Distances between consecutive points are 31 33 34 34 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 42 105 62 70 84 92 91 84 115 62 89 95 35 101 INFO: Distances between consecutive points are 38 37 37 36 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 34 102 116 60 89 92 91 84 62 72 84 76 42 106 INFO: Distances between consecutive points are 36 40 36 40 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 34 101 116 59 88 94 91 85 62 74 84 77 42 105 INFO: Distances between consecutive points are 35 39 36 41 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 41 98 112 70 86 86 89 83 65 63 88 78 40 103 INFO: Distances between consecutive points are 33 32 34 30 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 44 91 68 75 86 100 87 85 113 58 87 95 38 105 INFO: Distances between consecutive points are 32 34 32 32 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 40 102 66 64 87 86 90 84 113 70 86 103 40 98 INFO: Distances between consecutive points are 31 33 34 34 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 36 96 113 64 81 88 90 83 62 62 87 74 42 112 INFO: Distances between consecutive points are 36 36 38 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 114 62 85 95 90 84 66 72 87 81 44 87 INFO: Distances between consecutive points are 35 34 34 32 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 118 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 67 75 87 96 90 85 115 63 85 99 41 105 INFO: Distances between consecutive points are 32 33 33 34 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 63 84 95 90 85 65 71 87 81 44 90 INFO: Distances between consecutive points are 36 34 36 32 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 71 87 94 90 85 115 64 85 99 41 108 INFO: Distances between consecutive points are 32 35 33 36 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 63 85 95 90 85 66 71 87 81 44 90 INFO: Distances between consecutive points are 36 34 35 31 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 45 90 66 73 87 96 90 85 115 64 84 99 41 109 INFO: Distances between consecutive points are 31 35 32 38 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 108 114 61 88 96 86 84 68 71 86 77 45 108 INFO: Distances between consecutive points are 33 31 32 35 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 41 105 113 63 89 89 88 81 62 66 88 75 41 112 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 45 90 67 74 87 97 89 85 114 62 85 99 41 109 INFO: Distances between consecutive points are 31 34 32 35 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 69 87 90 90 84 116 68 85 102 41 106 INFO: Distances between consecutive points are 30 33 34 37 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 71 87 94 90 85 116 65 84 99 41 108 INFO: Distances between consecutive points are 32 35 33 38 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 44 90 67 75 87 98 89 85 114 61 85 99 41 108 INFO: Distances between consecutive points are 32 34 32 34 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 43 113 63 59 87 87 90 83 113 64 80 97 37 96 INFO: Distances between consecutive points are 33 39 37 35 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 66 84 85 91 83 119 69 89 93 38 105 INFO: Distances between consecutive points are 41 39 41 44 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 63 67 84 86 92 84 114 72 89 100 37 87 INFO: Distances between consecutive points are 35 34 35 38 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 67 84 86 91 83 120 67 89 93 41 108 INFO: Distances between consecutive points are 42 39 42 42 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 44 108 67 68 88 92 87 84 114 66 86 99 45 110 INFO: Distances between consecutive points are 33 32 30 35 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 38 105 119 65 88 88 90 82 56 69 85 80 39 97 INFO: Distances between consecutive points are 42 40 38 40 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 124 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 40 109 63 61 88 90 83 82 116 58 89 102 39 112 INFO: Distances between consecutive points are 32 35 37 33 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 35 103 116 63 93 89 88 86 59 68 95 74 40 111 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 35 103 116 63 93 88 88 86 59 65 95 74 39 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 119 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 42 92 109 72 89 83 88 83 63 64 94 75 41 111 INFO: Distances between consecutive points are 31 31 33 31 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 91 38 100 113 65 93 87 86 82 63 66 94 75 41 111 INFO: Distances between consecutive points are 36 35 33 33 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 42 110 64 64 94 85 88 81 111 68 92 95 46 111 INFO: Distances between consecutive points are 29 34 35 33 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 41 114 65 56 88 86 82 83 116 63 90 102 39 112 INFO: Distances between consecutive points are 31 34 36 35 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 117 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 41 111 64 61 94 82 87 83 109 72 89 102 42 92 INFO: Distances between consecutive points are 28 33 31 31 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 42 110 64 64 94 84 88 81 111 68 92 95 44 110 INFO: Distances between consecutive points are 29 34 35 34 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 42 110 64 64 94 85 88 81 112 66 93 95 44 110 INFO: Distances between consecutive points are 29 34 37 33 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 112 116 60 90 88 82 82 65 56 89 74 41 115 INFO: Distances between consecutive points are 33 36 35 31 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 112 116 59 90 88 82 82 65 57 89 74 42 115 INFO: Distances between consecutive points are 33 37 35 31 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 42 110 64 64 94 85 87 82 113 66 94 95 44 110 INFO: Distances between consecutive points are 29 33 37 33 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 42 110 64 63 94 83 87 82 112 68 93 96 44 110 INFO: Distances between consecutive points are 29 33 36 33 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 42 115 66 57 89 90 82 82 115 58 89 102 39 112 INFO: Distances between consecutive points are 31 35 35 33 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 118 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 44 110 113 65 94 87 86 82 63 66 94 75 42 108 INFO: Distances between consecutive points are 32 36 33 30 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 115 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 44 110 113 63 94 93 86 81 67 74 88 76 44 96 INFO: Distances between consecutive points are 31 33 29 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 34 90 61 66 83 92 81 84 118 58 83 98 36 99 INFO: Distances between consecutive points are 36 34 35 34 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 39 114 63 62 88 91 90 83 117 61 88 99 43 116 INFO: Distances between consecutive points are 38 40 39 38 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 42 110 63 60 90 87 91 85 114 63 88 96 40 108 INFO: Distances between consecutive points are 31 40 39 35 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 40 110 63 58 88 83 90 85 112 67 87 98 41 106 INFO: Distances between consecutive points are 32 38 37 35 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 35 110 63 62 88 87 89 84 116 63 88 97 45 116 INFO: Distances between consecutive points are 38 36 39 38 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 39 114 63 61 88 88 89 84 118 62 90 99 43 116 INFO: Distances between consecutive points are 37 38 41 37 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 82 44 113 63 62 89 90 89 84 118 61 90 99 43 115 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 114 64 61 88 90 89 83 117 60 89 99 42 116 INFO: Distances between consecutive points are 37 39 40 37 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 43 115 118 60 90 92 89 84 62 64 89 82 44 113 INFO: Distances between consecutive points are 36 39 39 37 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 35 109 63 62 88 89 89 84 114 61 88 98 45 114 INFO: Distances between consecutive points are 37 38 38 34 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 154 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 34 108 65 62 87 88 91 84 115 61 88 99 43 117 INFO: Distances between consecutive points are 37 37 41 38 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 35 109 63 63 88 89 89 84 117 61 89 98 45 116 INFO: Distances between consecutive points are 38 37 40 37 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 43 115 117 62 90 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 36 40 39 36 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 39 114 64 61 88 90 89 83 117 62 90 99 43 116 INFO: Distances between consecutive points are 37 39 39 37 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 64 88 89 89 84 116 61 88 98 45 117 INFO: Distances between consecutive points are 35 36 39 38 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 34 108 65 62 87 89 90 84 115 61 88 98 44 117 INFO: Distances between consecutive points are 37 37 39 38 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 41 110 63 57 88 83 89 85 111 69 87 98 41 106 INFO: Distances between consecutive points are 31 38 34 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 42 107 65 57 89 87 89 85 115 63 87 94 39 108 INFO: Distances between consecutive points are 36 39 38 38 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 42 107 66 57 89 87 89 84 115 64 87 94 38 108 INFO: Distances between consecutive points are 35 39 38 39 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 36 111 64 62 88 89 89 84 115 62 89 98 45 116 INFO: Distances between consecutive points are 37 37 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 62 69 86 93 87 83 118 59 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 38 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 89 90 84 63 64 87 74 33 101 INFO: Distances between consecutive points are 35 38 37 36 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 62 87 88 89 84 114 64 88 98 45 114 INFO: Distances between consecutive points are 34 37 36 36 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 105 110 69 87 83 89 85 64 57 88 79 41 110 INFO: Distances between consecutive points are 34 34 37 31 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 61 68 86 92 87 83 119 61 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 42 111 64 56 88 81 88 86 109 70 88 98 39 108 INFO: Distances between consecutive points are 30 36 33 38 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 83 40 112 65 62 88 89 90 83 117 62 86 99 42 116 INFO: Distances between consecutive points are 37 37 40 40 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 63 87 90 89 84 117 61 89 97 45 117 INFO: Distances between consecutive points are 35 38 39 38 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 39 115 64 60 88 87 89 83 118 64 91 99 44 115 INFO: Distances between consecutive points are 37 37 41 37 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 42 107 65 60 89 89 89 84 115 62 86 97 36 107 INFO: Distances between consecutive points are 37 38 38 38 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 86 41 108 64 61 89 90 89 85 116 62 88 96 37 108 INFO: Distances between consecutive points are 35 38 38 38 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 61 88 89 88 83 64 63 88 75 37 106 INFO: Distances between consecutive points are 34 37 36 33 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 37 108 116 61 88 90 89 85 64 59 89 91 45 108 INFO: Distances between consecutive points are 37 38 40 36 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 38 110 64 65 87 91 90 82 117 59 87 99 42 116 INFO: Distances between consecutive points are 38 37 41 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 42 115 62 61 89 91 88 84 119 61 90 99 43 115 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 42 109 66 55 89 84 88 85 115 66 89 94 38 108 INFO: Distances between consecutive points are 35 38 38 40 WARN: Could not find satisfactory control point fit - try 100 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 37 108 116 61 88 89 89 85 64 59 89 91 45 108 INFO: Distances between consecutive points are 37 39 39 36 WARN: Could not find satisfactory control point fit - try 101 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 110 64 56 88 81 88 85 109 71 86 99 42 105 INFO: Distances between consecutive points are 31 36 33 36 WARN: Could not find satisfactory control point fit - try 102 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 86 41 107 64 62 88 90 90 84 115 63 86 92 41 109 INFO: Distances between consecutive points are 36 38 37 39 WARN: Could not find satisfactory control point fit - try 103 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 83 40 112 65 62 87 87 90 82 117 63 86 99 42 116 INFO: Distances between consecutive points are 38 36 41 41 WARN: Could not find satisfactory control point fit - try 104 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 105 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 108 115 61 85 91 90 85 64 63 88 86 40 107 INFO: Distances between consecutive points are 39 38 38 37 WARN: Could not find satisfactory control point fit - try 106 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 36 110 64 62 88 91 88 83 114 57 88 99 43 117 INFO: Distances between consecutive points are 37 38 39 36 WARN: Could not find satisfactory control point fit - try 107 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 43 115 117 58 89 94 89 84 62 66 89 82 44 115 INFO: Distances between consecutive points are 35 39 40 39 WARN: Could not find satisfactory control point fit - try 108 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 60 88 92 88 83 65 64 87 77 35 109 INFO: Distances between consecutive points are 34 36 36 38 WARN: Could not find satisfactory control point fit - try 109 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 35 109 65 64 88 93 88 83 113 56 88 99 43 117 INFO: Distances between consecutive points are 38 37 38 35 WARN: Could not find satisfactory control point fit - try 110 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 84 42 110 64 63 89 89 88 85 115 63 89 99 39 108 INFO: Distances between consecutive points are 36 36 36 35 WARN: Could not find satisfactory control point fit - try 111 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 83 43 114 63 64 88 90 88 84 118 61 89 98 45 117 INFO: Distances between consecutive points are 39 36 39 38 WARN: Could not find satisfactory control point fit - try 112 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 85 42 109 64 61 89 90 89 85 116 64 88 96 37 108 INFO: Distances between consecutive points are 35 38 36 39 WARN: Could not find satisfactory control point fit - try 113 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 91 44 107 66 58 88 87 88 84 115 67 87 97 41 112 INFO: Distances between consecutive points are 34 37 35 40 WARN: Could not find satisfactory control point fit - try 114 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 35 106 63 65 84 91 88 82 116 61 85 96 40 112 INFO: Distances between consecutive points are 39 36 37 40 WARN: Could not find satisfactory control point fit - try 115 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 91 41 107 67 57 88 83 88 84 115 70 86 99 39 106 INFO: Distances between consecutive points are 35 35 37 40 WARN: Could not find satisfactory control point fit - try 116 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 41 106 67 67 86 94 89 83 115 58 88 100 43 117 INFO: Distances between consecutive points are 35 35 38 36 WARN: Could not find satisfactory control point fit - try 117 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 115 68 90 84 87 84 66 57 88 93 42 107 INFO: Distances between consecutive points are 38 37 35 36 WARN: Could not find satisfactory control point fit - try 118 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 35 110 64 62 88 88 89 83 114 63 88 98 45 114 INFO: Distances between consecutive points are 37 36 37 35 WARN: Could not find satisfactory control point fit - try 119 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 86 40 107 65 62 89 89 90 84 115 64 86 93 37 108 INFO: Distances between consecutive points are 35 37 37 41 WARN: Could not find satisfactory control point fit - try 120 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 91 38 102 65 57 88 85 90 85 116 67 85 99 41 108 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 121 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 91 41 107 67 56 88 84 87 84 115 68 88 99 38 107 INFO: Distances between consecutive points are 34 36 37 39 WARN: Could not find satisfactory control point fit - try 122 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 42 107 66 57 89 86 89 84 116 67 86 95 38 105 INFO: Distances between consecutive points are 35 38 37 41 WARN: Could not find satisfactory control point fit - try 123 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 39 111 64 63 87 89 90 82 117 61 86 100 41 114 INFO: Distances between consecutive points are 38 37 41 38 WARN: Could not find satisfactory control point fit - try 124 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 35 107 63 64 85 90 87 82 118 62 86 98 37 107 INFO: Distances between consecutive points are 38 36 38 38 WARN: Could not find satisfactory control point fit - try 125 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 42 109 67 53 89 79 86 86 113 75 89 101 43 94 INFO: Distances between consecutive points are 34 35 36 35 WARN: Could not find satisfactory control point fit - try 126 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 44 115 118 60 90 91 88 85 61 63 89 81 44 115 INFO: Distances between consecutive points are 35 39 39 38 WARN: Could not find satisfactory control point fit - try 127 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 86 41 107 65 61 88 88 88 84 115 67 86 99 40 108 INFO: Distances between consecutive points are 35 36 34 38 WARN: Could not find satisfactory control point fit - try 128 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 83 43 115 64 63 88 89 89 84 114 62 88 96 46 116 INFO: Distances between consecutive points are 39 36 37 37 WARN: Could not find satisfactory control point fit - try 129 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 38 110 64 64 87 89 90 82 117 61 86 100 41 114 INFO: Distances between consecutive points are 37 36 41 38 WARN: Could not find satisfactory control point fit - try 130 Finding center streamline INFO: Step is 7 voxels WARN: Turning off FA check for center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 92 38 107 106 45 91 97 42 97 95 41 101 93 39 108 INFO: Distances between consecutive points are 22 11 5 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 4600.61 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 528 streamlines for straying off mask INFO: Rejected 374 streamlines for reversing direction INFO: Rejected 70 streamlines as length outliers INFO: Have 13654 total streamlines (min/mean/max length: 51/84/109) Processing pathway 8 of 18... Matching streamline ends INFO: Have 10366 non-truncated streamlines (min/mean/max length: 53/85/112) INFO: Center of mass of start points: (91+/-13, 186+/-6, 76+/-12) INFO: Center of mass of midpoints: (107+/-3, 174+/-3, 73+/-10) INFO: Center of mass of end points: (91+/-13, 186+/-6, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 47772 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 82 192 73 72 168 70 95 154 74 106 177 73 100 185 78 INFO: Distances between consecutive points are 26 27 26 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 849.736 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 99 streamlines for straying off mask INFO: Rejected 13 streamlines for reversing direction INFO: Rejected 61 streamlines as length outliers INFO: Have 8941 total streamlines (min/mean/max length: 31/58/83) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3541 non-truncated streamlines (min/mean/max length: 37/67/85) INFO: Center of mass of start points: (104+/-12, 144+/-33, 75+/-10) INFO: Center of mass of midpoints: (110+/-2, 151+/-2, 77+/-7) INFO: Center of mass of end points: (107+/-14, 149+/-32, 78+/-11) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 33125 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 97 119 80 101 127 78 108 140 78 111 173 70 107 181 67 INFO: Distances between consecutive points are 9 15 34 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 302.598 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 59 streamlines for straying off mask INFO: Rejected 43 streamlines for reversing direction INFO: Rejected 21 streamlines as length outliers INFO: Have 7661 total streamlines (min/mean/max length: 31/61/92) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3412 non-truncated streamlines (min/mean/max length: 42/68/91) INFO: Center of mass of start points: (71+/-11, 167+/-30, 80+/-11) INFO: Center of mass of midpoints: (69+/-2, 153+/-2, 78+/-6) INFO: Center of mass of end points: (79+/-6, 132+/-30, 79+/-8) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 30804 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 70 180 83 69 172 78 69 155 76 69 147 80 83 117 81 INFO: Distances between consecutive points are 9 17 9 33 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 253.53 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 106 streamlines for straying off mask INFO: Rejected 32 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2950 total streamlines (min/mean/max length: 3/41/87) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1026 non-truncated streamlines (min/mean/max length: 14/44/92) INFO: Center of mass of start points: (115+/-5, 110+/-15, 48+/-12) INFO: Center of mass of midpoints: (107+/-5, 85+/-2, 70+/-3) INFO: Center of mass of end points: (109+/-7, 82+/-14, 75+/-14) INFO: Split streamlines into 8 segments Computing path histograms INFO: Total streamline volume is 13393 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 23 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 110 99 55 109 95 59 108 91 63 107 88 66 105 78 76 INFO: Distances between consecutive points are 6 6 4 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 22.387 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 216 streamlines for straying off mask INFO: Rejected 101 streamlines for reversing direction INFO: Rejected 13 streamlines as length outliers INFO: Have 2716 total streamlines (min/mean/max length: 12/40/88) Processing pathway 12 of 18... Matching streamline ends INFO: Have 886 non-truncated streamlines (min/mean/max length: 13/45/91) INFO: Center of mass of start points: (64+/-4, 113+/-14, 47+/-10) INFO: Center of mass of midpoints: (71+/-5, 87+/-2, 71+/-3) INFO: Center of mass of end points: (70+/-5, 82+/-12, 78+/-12) INFO: Split streamlines into 8 segments Computing path histograms INFO: Total streamline volume is 13915 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 60 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 61 123 41 64 120 41 66 108 45 72 85 72 73 71 84 INFO: Distances between consecutive points are 4 13 36 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 19.968 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 54 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 4053 total streamlines (min/mean/max length: 27/64/134) Processing pathway 13 of 18... Matching streamline ends INFO: Have 2425 non-truncated streamlines (min/mean/max length: 27/67/134) INFO: Center of mass of start points: (98+/-4, 128+/-33, 97+/-11) INFO: Center of mass of midpoints: (99+/-2, 94+/-4, 105+/-2) INFO: Center of mass of end points: (100+/-4, 97+/-30, 103+/-9) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16279 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 100 153 91 95 125 106 95 113 105 104 79 103 98 69 109 INFO: Distances between consecutive points are 32 12 35 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 77.89 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 117 streamlines for straying off mask INFO: Rejected 1 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 3509 total streamlines (min/mean/max length: 29/62/110) Processing pathway 14 of 18... Matching streamline ends INFO: Have 2216 non-truncated streamlines (min/mean/max length: 30/64/113) INFO: Center of mass of start points: (81+/-4, 119+/-33, 100+/-10) INFO: Center of mass of midpoints: (79+/-2, 95+/-3, 105+/-3) INFO: Center of mass of end points: (81+/-4, 105+/-31, 101+/-10) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16146 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 85 143 99 83 135 103 82 119 107 81 93 103 83 80 97 INFO: Distances between consecutive points are 9 17 26 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 48.243 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 60 streamlines for straying off mask INFO: Rejected 262 streamlines for reversing direction INFO: Rejected 14 streamlines as length outliers INFO: Have 6234 total streamlines (min/mean/max length: 23/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3107 non-truncated streamlines (min/mean/max length: 30/65/102) INFO: Center of mass of start points: (144+/-8, 114+/-21, 99+/-13) INFO: Center of mass of midpoints: (131+/-6, 118+/-4, 99+/-5) INFO: Center of mass of end points: (144+/-8, 99+/-22, 106+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 39402 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 41 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 139 123 90 131 115 96 132 111 98 129 95 101 137 79 102 INFO: Distances between consecutive points are 13 5 17 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 166.712 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 174 streamlines for straying off mask INFO: Rejected 483 streamlines for reversing direction INFO: Rejected 46 streamlines as length outliers INFO: Have 8605 total streamlines (min/mean/max length: 20/62/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 4149 non-truncated streamlines (min/mean/max length: 27/68/102) INFO: Center of mass of start points: (35+/-8, 121+/-21, 99+/-13) INFO: Center of mass of midpoints: (47+/-6, 121+/-3, 99+/-6) INFO: Center of mass of end points: (39+/-9, 91+/-23, 110+/-13) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 50023 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 127 91 49 120 98 51 99 103 53 82 101 43 70 114 INFO: Distances between consecutive points are 19 22 17 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 329.278 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 50 streamlines for straying off mask INFO: Rejected 36 streamlines for reversing direction INFO: Rejected 10 streamlines as length outliers INFO: Have 3993 total streamlines (min/mean/max length: 34/87/138) Processing pathway 17 of 18... Matching streamline ends INFO: Have 2718 non-truncated streamlines (min/mean/max length: 42/91/139) INFO: Center of mass of start points: (144+/-7, 106+/-26, 77+/-18) INFO: Center of mass of midpoints: (129+/-4, 117+/-3, 98+/-4) INFO: Center of mass of end points: (145+/-7, 108+/-27, 83+/-18) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 32820 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 146 97 60 135 82 70 126 81 93 128 118 98 145 125 96 INFO: Distances between consecutive points are 21 25 37 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 92.279 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 46 streamlines for straying off mask INFO: Rejected 39 streamlines for reversing direction INFO: Rejected 13 streamlines as length outliers INFO: Have 1754 total streamlines (min/mean/max length: 55/86/133) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1036 non-truncated streamlines (min/mean/max length: 57/88/128) INFO: Center of mass of start points: (36+/-8, 113+/-28, 88+/-18) INFO: Center of mass of midpoints: (52+/-5, 119+/-3, 101+/-5) INFO: Center of mass of end points: (36+/-9, 101+/-28, 82+/-17) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 21999 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 74 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 35 125 99 51 116 101 51 90 101 46 78 79 37 77 76 INFO: Distances between consecutive points are 18 26 26 10 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 34.712 sec. dmri_train done img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.21701.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.21701.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr Training subject directory list: /private/tmp/subj23.freesurfer.21701.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 389 streamlines for straying off mask INFO: Rejected 81 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 5565 total streamlines (min/mean/max length: 63/101/137) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 3142 non-truncated streamlines (min/mean/max length: 66/101/137) INFO: Center of mass of start points: (97+/-3, 99+/-6, 37+/-12) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 77+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 35364 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 97 101 36 99 105 53 113 110 82 111 106 118 106 111 147 INFO: Distances between consecutive points are 18 33 36 30 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 249.163 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 247 streamlines for straying off mask INFO: Rejected 889 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4927 total streamlines (min/mean/max length: 51/99/139) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2850 non-truncated streamlines (min/mean/max length: 53/99/136) INFO: Center of mass of start points: (78+/-8, 100+/-9, 67+/-46) INFO: Center of mass of midpoints: (81+/-3, 100+/-6, 45+/-14) INFO: Center of mass of end points: (71+/-10, 101+/-9, 115+/-45) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38246 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 102 37 78 102 41 76 106 58 65 111 82 69 103 142 INFO: Distances between consecutive points are 4 18 27 61 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 181.447 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 93 streamlines for straying off mask INFO: Rejected 43 streamlines for reversing direction INFO: Rejected 21 streamlines as length outliers INFO: Have 2201 total streamlines (min/mean/max length: 49/93/130) Processing pathway 3 of 18... Matching streamline ends INFO: Have 943 non-truncated streamlines (min/mean/max length: 50/101/129) INFO: Center of mass of start points: (126+/-15, 106+/-45, 49+/-15) INFO: Center of mass of midpoints: (134+/-6, 130+/-3, 44+/-7) INFO: Center of mass of end points: (121+/-15, 74+/-45, 63+/-20) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 29236 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 113 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 135 42 133 107 58 128 78 71 115 49 72 116 34 52 INFO: Distances between consecutive points are 33 32 32 25 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 114 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 135 43 132 108 58 128 79 70 116 50 72 116 34 52 INFO: Distances between consecutive points are 31 32 31 26 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 112 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 137 134 44 131 85 68 111 44 72 110 35 59 116 34 52 INFO: Distances between consecutive points are 55 46 16 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 82.848 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 21 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1185 total streamlines (min/mean/max length: 52/94/134) Processing pathway 4 of 18... Matching streamline ends INFO: Have 499 non-truncated streamlines (min/mean/max length: 58/102/127) INFO: Center of mass of start points: (51+/-11, 125+/-36, 45+/-14) INFO: Center of mass of midpoints: (48+/-6, 134+/-3, 42+/-7) INFO: Center of mass of end points: (65+/-13, 59+/-36, 69+/-17) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 20621 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 47 147 42 47 122 50 46 96 60 58 69 73 75 43 77 INFO: Distances between consecutive points are 26 28 32 31 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 42 137 39 47 129 43 47 97 59 58 70 73 70 42 74 INFO: Distances between consecutive points are 10 36 32 30 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 37.904 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 1032 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3242 total streamlines (min/mean/max length: 17/63/103) Processing pathway 5 of 18... Matching streamline ends INFO: Have 2346 non-truncated streamlines (min/mean/max length: 21/62/101) INFO: Center of mass of start points: (119+/-13, 151+/-14, 49+/-10) INFO: Center of mass of midpoints: (128+/-4, 131+/-2, 44+/-3) INFO: Center of mass of end points: (120+/-13, 149+/-13, 50+/-10) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 19252 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 126 148 41 127 128 48 121 124 60 109 144 60 108 162 57 INFO: Distances between consecutive points are 21 14 23 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 52.427 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 180 streamlines for straying off mask INFO: Rejected 21 streamlines for reversing direction INFO: Rejected 4 streamlines as length outliers INFO: Have 5458 total streamlines (min/mean/max length: 9/65/104) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3470 non-truncated streamlines (min/mean/max length: 13/65/104) INFO: Center of mass of start points: (59+/-11, 152+/-14, 46+/-9) INFO: Center of mass of midpoints: (53+/-4, 134+/-3, 44+/-4) INFO: Center of mass of end points: (66+/-12, 157+/-16, 52+/-9) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 23875 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 55 145 40 52 129 47 59 132 62 74 151 64 77 172 59 INFO: Distances between consecutive points are 18 17 24 22 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 146.221 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 1018 streamlines for straying off mask INFO: Rejected 194 streamlines for reversing direction INFO: Rejected 79 streamlines as length outliers INFO: Have 6206 total streamlines (min/mean/max length: 85/131/159) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4687 non-truncated streamlines (min/mean/max length: 85/133/162) INFO: Center of mass of start points: (89+/-15, 39+/-9, 101+/-15) INFO: Center of mass of midpoints: (106+/-5, 45+/-8, 94+/-12) INFO: Center of mass of end points: (88+/-15, 39+/-9, 102+/-15) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 56971 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 59 66 92 90 91 83 116 63 89 99 37 105 INFO: Distances between consecutive points are 33 41 39 35 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 64 87 89 90 84 116 61 89 98 44 117 INFO: Distances between consecutive points are 36 37 40 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 42 103 59 66 92 91 91 83 117 62 88 98 36 104 INFO: Distances between consecutive points are 33 42 39 36 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 64 87 89 90 84 117 63 88 97 44 117 INFO: Distances between consecutive points are 36 37 39 40 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 103 60 67 92 92 91 83 117 60 88 98 34 104 INFO: Distances between consecutive points are 34 41 40 36 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 104 60 67 92 91 91 83 117 62 88 98 34 106 INFO: Distances between consecutive points are 34 40 39 38 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 89 90 90 84 63 65 87 74 33 101 INFO: Distances between consecutive points are 35 38 37 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 62 69 86 93 87 83 118 58 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 38 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 61 68 86 92 87 83 119 60 87 97 38 112 INFO: Distances between consecutive points are 39 36 38 40 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 89 89 83 64 62 88 75 37 106 INFO: Distances between consecutive points are 35 37 37 33 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 60 89 95 89 83 67 71 87 76 37 99 INFO: Distances between consecutive points are 34 36 34 37 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 44 115 115 63 88 89 91 84 64 63 86 75 34 104 INFO: Distances between consecutive points are 37 38 38 36 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 63 87 89 90 83 114 63 88 98 45 114 INFO: Distances between consecutive points are 35 38 37 35 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 62 71 84 92 91 85 116 61 89 95 39 105 INFO: Distances between consecutive points are 38 36 39 34 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 39 101 64 72 85 95 86 82 118 59 87 98 38 111 INFO: Distances between consecutive points are 38 34 36 38 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 40 100 67 68 86 91 89 83 114 61 88 98 45 114 INFO: Distances between consecutive points are 33 32 37 34 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 63 63 87 89 90 84 116 62 89 98 46 117 INFO: Distances between consecutive points are 35 38 39 37 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 105 115 58 89 94 90 84 63 72 85 78 46 106 INFO: Distances between consecutive points are 32 39 36 37 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 45 106 63 70 85 90 91 84 116 64 90 95 34 101 INFO: Distances between consecutive points are 36 34 38 38 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 40 100 67 69 86 93 88 83 114 60 88 98 44 114 INFO: Distances between consecutive points are 34 32 35 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 105 63 66 85 92 87 82 117 60 85 97 35 106 INFO: Distances between consecutive points are 38 36 37 38 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 35 100 115 58 88 96 90 85 65 75 85 78 46 106 INFO: Distances between consecutive points are 33 37 34 38 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 39 102 66 64 87 86 91 83 113 70 86 103 40 98 INFO: Distances between consecutive points are 32 34 34 34 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 33 101 64 61 86 82 91 84 112 73 85 103 40 99 INFO: Distances between consecutive points are 33 35 35 37 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 46 106 63 71 85 92 91 84 116 63 90 95 34 102 INFO: Distances between consecutive points are 36 35 37 38 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 35 98 116 62 89 93 91 85 62 72 84 76 42 105 INFO: Distances between consecutive points are 35 37 36 39 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 62 71 84 91 92 84 115 63 89 95 35 101 INFO: Distances between consecutive points are 38 36 38 36 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 41 98 112 71 85 86 89 83 65 63 87 78 40 103 INFO: Distances between consecutive points are 34 32 34 31 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 34 101 116 59 88 94 91 85 62 74 84 77 42 105 INFO: Distances between consecutive points are 35 39 36 41 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 37 96 114 63 81 87 90 83 62 61 87 74 43 113 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 34 102 116 61 89 93 91 85 62 73 84 76 42 106 INFO: Distances between consecutive points are 37 38 36 41 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 44 91 67 74 86 98 88 85 114 60 86 94 39 108 INFO: Distances between consecutive points are 32 34 32 36 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 120 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 67 75 87 96 90 85 115 64 85 99 41 105 INFO: Distances between consecutive points are 32 33 32 34 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 68 76 87 99 89 86 114 58 86 93 38 108 INFO: Distances between consecutive points are 33 34 34 36 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 106 114 62 86 97 88 84 67 73 87 82 45 91 INFO: Distances between consecutive points are 34 31 34 32 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 37 96 114 63 81 87 90 83 62 61 87 74 43 113 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 39 111 62 59 86 83 90 83 112 70 83 103 37 87 INFO: Distances between consecutive points are 34 38 35 34 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 100 112 69 85 84 89 82 66 60 86 77 36 106 INFO: Distances between consecutive points are 36 35 34 33 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 115 63 84 96 90 84 67 73 87 81 44 87 INFO: Distances between consecutive points are 37 33 34 32 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 109 114 61 88 96 87 84 68 72 86 77 45 108 INFO: Distances between consecutive points are 34 32 32 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 62 85 95 90 85 66 71 87 81 44 90 INFO: Distances between consecutive points are 35 34 35 31 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 115 63 84 95 91 85 66 72 87 81 44 90 INFO: Distances between consecutive points are 37 34 35 32 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 45 90 66 73 87 96 90 85 115 65 84 99 41 109 INFO: Distances between consecutive points are 31 35 31 38 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 71 87 94 91 85 116 65 84 99 41 109 INFO: Distances between consecutive points are 32 35 34 39 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 71 87 94 91 85 115 63 85 99 41 108 INFO: Distances between consecutive points are 32 35 35 36 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 60 63 89 87 88 85 113 60 88 103 31 101 INFO: Distances between consecutive points are 34 37 38 33 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 103 60 63 89 87 87 85 113 58 88 103 32 101 INFO: Distances between consecutive points are 34 36 39 31 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 61 63 89 86 87 85 112 61 88 99 35 100 INFO: Distances between consecutive points are 33 35 37 31 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 66 84 86 91 82 120 67 88 92 37 105 INFO: Distances between consecutive points are 41 39 42 44 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 60 64 89 90 88 85 112 61 88 102 31 97 INFO: Distances between consecutive points are 35 39 35 33 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 70 87 93 90 84 115 66 85 102 41 106 INFO: Distances between consecutive points are 31 35 33 35 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 105 56 66 84 85 91 82 120 68 89 93 40 108 INFO: Distances between consecutive points are 42 38 42 43 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 67 84 85 90 82 119 68 89 93 38 106 INFO: Distances between consecutive points are 42 37 41 43 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 153 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 56 66 84 87 91 83 120 67 88 93 37 105 INFO: Distances between consecutive points are 41 40 41 44 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 55 66 84 85 91 83 120 68 89 94 37 106 INFO: Distances between consecutive points are 42 39 42 44 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 36 102 61 64 89 87 87 85 112 60 89 99 35 100 INFO: Distances between consecutive points are 33 35 37 30 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 91 87 84 62 67 89 74 36 102 INFO: Distances between consecutive points are 32 35 36 36 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 45 90 66 73 87 96 90 85 115 64 84 99 41 109 INFO: Distances between consecutive points are 31 35 32 38 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 66 84 85 91 83 119 69 89 93 40 109 INFO: Distances between consecutive points are 41 39 41 44 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 44 108 67 69 87 95 87 84 113 63 87 99 45 110 INFO: Distances between consecutive points are 34 33 30 32 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 37 105 119 66 88 89 91 82 56 71 85 80 39 97 INFO: Distances between consecutive points are 43 40 39 42 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 58 88 92 86 84 62 67 89 74 36 103 INFO: Distances between consecutive points are 30 34 36 36 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 37 104 120 65 88 88 91 82 55 68 84 80 39 98 INFO: Distances between consecutive points are 43 42 40 41 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 32 102 64 59 86 89 84 81 117 59 87 102 34 104 INFO: Distances between consecutive points are 34 36 38 34 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 92 37 104 120 67 88 87 91 82 55 68 84 80 39 97 INFO: Distances between consecutive points are 44 41 39 40 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 38 98 55 69 84 88 91 83 120 67 89 93 39 109 INFO: Distances between consecutive points are 42 40 40 44 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 124 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 40 109 63 61 87 89 83 81 116 60 89 102 40 112 INFO: Distances between consecutive points are 32 35 36 34 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 36 92 119 69 88 81 91 82 56 63 84 80 39 97 INFO: Distances between consecutive points are 41 44 38 36 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 2144.17 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 482 streamlines for straying off mask INFO: Rejected 390 streamlines for reversing direction INFO: Rejected 59 streamlines as length outliers INFO: Have 13695 total streamlines (min/mean/max length: 51/84/111) Processing pathway 8 of 18... Matching streamline ends INFO: Have 10503 non-truncated streamlines (min/mean/max length: 51/85/115) INFO: Center of mass of start points: (91+/-13, 186+/-6, 75+/-12) INFO: Center of mass of midpoints: (107+/-3, 174+/-3, 73+/-10) INFO: Center of mass of end points: (91+/-13, 186+/-6, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 48132 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 83 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 79 184 83 71 172 70 82 154 73 106 163 72 99 185 71 INFO: Distances between consecutive points are 19 21 26 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 827.823 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 22 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 8930 total streamlines (min/mean/max length: 30/58/83) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3569 non-truncated streamlines (min/mean/max length: 35/66/84) INFO: Center of mass of start points: (104+/-12, 144+/-33, 75+/-10) INFO: Center of mass of midpoints: (110+/-2, 151+/-2, 77+/-7) INFO: Center of mass of end points: (107+/-13, 150+/-32, 78+/-11) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 33154 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 63 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 119 74 99 122 75 109 142 78 112 171 71 107 181 67 INFO: Distances between consecutive points are 5 23 30 12 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 290.937 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 66 streamlines for straying off mask INFO: Rejected 39 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 7632 total streamlines (min/mean/max length: 29/60/84) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3359 non-truncated streamlines (min/mean/max length: 41/68/85) INFO: Center of mass of start points: (71+/-11, 167+/-30, 80+/-11) INFO: Center of mass of midpoints: (69+/-2, 153+/-2, 78+/-6) INFO: Center of mass of end points: (79+/-6, 132+/-30, 79+/-8) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 30814 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 75 187 78 71 179 81 67 158 75 69 146 81 83 117 81 INFO: Distances between consecutive points are 9 22 14 32 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 245.247 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 110 streamlines for straying off mask INFO: Rejected 41 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2937 total streamlines (min/mean/max length: 3/41/88) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1037 non-truncated streamlines (min/mean/max length: 14/45/85) INFO: Center of mass of start points: (115+/-5, 111+/-15, 48+/-12) INFO: Center of mass of midpoints: (107+/-5, 86+/-2, 70+/-3) INFO: Center of mass of end points: (109+/-7, 83+/-14, 75+/-14) INFO: Split streamlines into 8 segments Computing path histograms INFO: Total streamline volume is 13496 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 36 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 118 117 41 117 109 45 111 98 55 109 91 62 110 83 70 INFO: Distances between consecutive points are 9 16 10 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 22.125 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 240 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 11 streamlines as length outliers INFO: Have 2706 total streamlines (min/mean/max length: 12/40/90) Processing pathway 12 of 18... Matching streamline ends INFO: Have 897 non-truncated streamlines (min/mean/max length: 16/45/92) INFO: Center of mass of start points: (64+/-4, 114+/-14, 47+/-10) INFO: Center of mass of midpoints: (71+/-5, 87+/-2, 70+/-3) INFO: Center of mass of end points: (70+/-5, 83+/-12, 77+/-13) INFO: Split streamlines into 8 segments Computing path histograms INFO: Total streamline volume is 13896 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 53 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 65 125 40 65 120 40 65 112 42 66 105 50 70 81 82 INFO: Distances between consecutive points are 5 8 11 40 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 19.403 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 51 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 4064 total streamlines (min/mean/max length: 25/64/134) Processing pathway 13 of 18... Matching streamline ends INFO: Have 2494 non-truncated streamlines (min/mean/max length: 26/67/134) INFO: Center of mass of start points: (98+/-4, 128+/-33, 97+/-11) INFO: Center of mass of midpoints: (99+/-2, 94+/-3, 106+/-2) INFO: Center of mass of end points: (100+/-4, 97+/-30, 103+/-9) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16335 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 156 89 98 152 93 98 133 104 97 104 106 103 84 103 INFO: Distances between consecutive points are 6 22 29 21 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 74.854 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 115 streamlines for straying off mask INFO: Rejected 2 streamlines for reversing direction INFO: Rejected 41 streamlines as length outliers INFO: Have 3514 total streamlines (min/mean/max length: 29/62/113) Processing pathway 14 of 18... Matching streamline ends INFO: Have 2216 non-truncated streamlines (min/mean/max length: 29/64/114) INFO: Center of mass of start points: (81+/-4, 119+/-33, 100+/-10) INFO: Center of mass of midpoints: (79+/-2, 95+/-3, 105+/-3) INFO: Center of mass of end points: (81+/-4, 105+/-31, 101+/-10) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 16310 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 146 98 81 130 107 82 105 107 76 88 104 80 80 102 INFO: Distances between consecutive points are 18 25 18 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 48.334 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 228 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 6265 total streamlines (min/mean/max length: 22/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3045 non-truncated streamlines (min/mean/max length: 27/65/102) INFO: Center of mass of start points: (144+/-8, 114+/-21, 99+/-13) INFO: Center of mass of midpoints: (132+/-6, 118+/-4, 99+/-6) INFO: Center of mass of end points: (144+/-8, 98+/-22, 106+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 39780 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 129 101 133 118 100 125 94 104 133 86 107 143 87 114 INFO: Distances between consecutive points are 19 26 12 12 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 167.174 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 201 streamlines for straying off mask INFO: Rejected 474 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 8580 total streamlines (min/mean/max length: 20/62/97) Processing pathway 16 of 18... Matching streamline ends INFO: Have 4178 non-truncated streamlines (min/mean/max length: 27/68/101) INFO: Center of mass of start points: (35+/-8, 121+/-21, 99+/-13) INFO: Center of mass of midpoints: (47+/-6, 121+/-3, 99+/-6) INFO: Center of mass of end points: (39+/-9, 91+/-23, 110+/-13) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 49919 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 32 132 101 48 122 99 53 106 102 53 80 102 41 74 116 INFO: Distances between consecutive points are 19 17 26 19 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 318.653 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 56 streamlines for straying off mask INFO: Rejected 38 streamlines for reversing direction INFO: Rejected 9 streamlines as length outliers INFO: Have 3986 total streamlines (min/mean/max length: 33/87/138) Processing pathway 17 of 18... Matching streamline ends INFO: Have 2736 non-truncated streamlines (min/mean/max length: 37/91/138) INFO: Center of mass of start points: (144+/-7, 106+/-26, 77+/-18) INFO: Center of mass of midpoints: (129+/-4, 117+/-3, 98+/-4) INFO: Center of mass of end points: (145+/-7, 108+/-27, 83+/-18) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 33006 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 146 98 60 138 86 65 126 82 95 129 120 97 139 127 96 INFO: Distances between consecutive points are 15 33 38 12 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 88.647 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 51 streamlines for straying off mask INFO: Rejected 36 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1765 total streamlines (min/mean/max length: 42/86/135) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1023 non-truncated streamlines (min/mean/max length: 55/89/137) INFO: Center of mass of start points: (36+/-8, 114+/-28, 88+/-18) INFO: Center of mass of midpoints: (52+/-5, 119+/-3, 101+/-5) INFO: Center of mass of end points: (36+/-9, 101+/-28, 82+/-17) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 22242 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 132 105 53 111 104 53 90 103 52 78 89 36 79 67 INFO: Distances between consecutive points are 30 21 18 27 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_cpts_5.nii.gz Done in 37.178 sec. dmri_train done img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_bbr_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_bbr_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_bbr_cpts_5_std.txt #------------------------------------- trac-preproc finished without error at Thu Apr 11 14:50:55 CDT 2013 New invocation of trac-all Thu Apr 11 15:20:22 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data /usr/local/freesurfer5.1/bin/trac-all -bedp -c dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 882M wired, 2770M active, 747M inactive, 4399M used, 7875M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/04/11-20:20:24-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-20:20:24-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-20:20:24-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-20:20:24-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-20:20:24-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer ln -sf /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/nodif_brain_mask.nii.gz ln -sf /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri subjectdir is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dmri Making bedpostx directory structure Queuing preprocessing stages Queuing parallel processing stage 0 slices processed 6 slices processed 11 slices processed 16 slices processed 22 slices processed Queuing post processing stage /usr/local/freesurfer/bin/bedpostx_seychelles: line 375: 29196 Terminated ${subjdir}.bedpostX/monitor New invocation of trac-all Thu Apr 11 16:09:56 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data /usr/local/freesurfer5.1/bin/trac-all -path -c dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 884M wired, 2795M active, 884M inactive, 4563M used, 7706M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/04/11-21:09:58-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-21:09:58-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-21:09:58-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-21:09:58-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/11-21:09:58-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-paths brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 895M wired, 2787M active, 883M inactive, 4566M used, 7707M free. #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Thu Apr 11 16:10:00 CDT 2013 /usr/local/freesurfer5.1/bin/dmri_paths --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt End ROI 1: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_end1_dil.nii.gz 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_end1_dil.nii.gz End ROI 2: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_end2_dil.nii.gz Neighbor aseg prior: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all Neighbor aseg label ID list: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all Local aseg prior: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all Local aseg label ID list: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all Segmentation map: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg.nii.gz Type of aseg prior: 0 DWI-to-atlas affine registration: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/xfms/diff2mni.flt.mat Number of burn-in samples: 200 Number of post-burn-in samples: 5000 Keep every: 5-th sample Update proposal every: 0-th sample Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt Loading DWIs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dwi.nii.gz Loading mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri.bedpostX Loading segmentation map from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg.nii.gz Loading b-values from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/bvals Loading gradients from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/bvecs Loading atlas reference volume from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_end1_dil.nii.gz Loading affine registration from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/xfms/diff2mni.flt.mat Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 1 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 32 31 2 36 32 6 38 30 19 38 30 19 34 28 24 Running MCMC main jumps ERROR: Degenerate spline segment 34 30 1 35 32 8 38 30 18 38 30 18 38 28 23 ERROR: Degenerate spline segment 33 31 0 35 32 8 38 29 18 38 29 18 36 27 24 ERROR: Degenerate spline segment 35 30 2 37 33 14 37 33 14 39 30 19 37 27 23 ERROR: Degenerate spline segment 34 30 1 37 33 13 38 30 20 38 30 20 37 27 27 ERROR: Degenerate spline segment 33 30 1 37 31 10 37 26 20 37 26 20 38 25 22 ERROR: Degenerate spline segment 33 29 1 37 32 11 37 28 21 36 30 23 36 30 23 ERROR: Degenerate spline segment 32 29 2 37 31 11 37 29 20 37 29 20 37 29 24 ERROR: Degenerate spline segment 33 27 2 35 33 6 38 30 18 38 30 18 34 27 28 ERROR: Degenerate spline segment 34 29 2 35 33 6 38 29 18 38 29 18 34 27 28 ERROR: Degenerate spline segment 32 30 2 36 31 8 37 30 15 37 30 15 36 28 27 ERROR: Degenerate spline segment 32 31 0 36 31 8 37 30 15 37 30 15 37 27 26 ERROR: Degenerate spline segment 32 31 0 36 31 8 37 30 15 37 30 15 38 28 23 ERROR: Degenerate spline segment 32 31 0 36 31 8 37 32 15 37 32 15 38 28 23 ERROR: Degenerate spline segment 34 30 2 36 32 9 38 29 18 38 29 18 37 28 23 ERROR: Degenerate spline segment 33 30 2 36 32 9 38 29 18 38 29 18 40 29 23 ERROR: Degenerate spline segment 34 30 0 36 32 9 38 29 19 38 29 19 40 29 23 ERROR: Degenerate spline segment 33 29 1 38 32 9 38 27 18 38 27 18 37 29 24 ERROR: Degenerate spline segment 33 32 1 36 31 9 38 28 19 38 28 19 39 30 24 ERROR: Degenerate spline segment 33 31 3 33 31 3 39 30 18 37 27 23 37 29 27 ERROR: Degenerate spline segment 33 31 1 36 32 10 38 30 16 37 28 24 37 28 24 ERROR: Degenerate spline segment 33 31 3 36 32 9 38 30 17 34 27 24 34 27 24 ERROR: Degenerate spline segment 32 28 2 40 31 14 40 31 14 37 29 20 34 26 25 ERROR: Degenerate spline segment 33 30 1 37 32 11 36 28 22 37 29 24 37 29 24 ERROR: Degenerate spline segment 33 31 1 38 30 13 36 28 26 36 28 26 37 28 27 ERROR: Degenerate spline segment 34 30 3 38 29 11 35 27 24 35 27 24 36 28 26 ERROR: Degenerate spline segment 33 30 3 39 28 16 37 27 23 37 27 23 36 28 26 ERROR: Degenerate spline segment 33 32 2 38 28 16 37 28 25 37 28 25 35 28 24 ERROR: Degenerate spline segment 33 32 2 39 30 16 36 28 24 36 28 24 36 27 25 ERROR: Degenerate spline segment 33 32 1 38 30 14 36 29 20 37 27 22 37 27 22 ERROR: Degenerate spline segment 32 32 0 39 31 16 38 27 17 35 27 27 35 27 27 ERROR: Degenerate spline segment 33 32 0 39 31 17 38 29 16 34 27 26 34 27 26 ERROR: Degenerate spline segment 32 31 1 39 30 17 37 29 17 36 28 25 36 28 25 ERROR: Degenerate spline segment 32 30 1 40 30 17 39 30 17 36 28 26 36 28 26 ERROR: Degenerate spline segment 33 31 0 39 30 18 37 27 20 38 26 25 38 26 25 ERROR: Degenerate spline segment 33 31 2 39 31 17 38 31 20 38 26 25 38 26 25 ERROR: Degenerate spline segment 33 31 2 39 31 17 38 30 20 38 26 25 38 26 25 ERROR: Degenerate spline segment 33 30 2 38 31 12 37 28 22 37 28 22 37 28 23 ERROR: Degenerate spline segment 34 31 2 37 30 14 39 29 20 35 28 24 35 28 24 ERROR: Degenerate spline segment 33 32 1 38 32 13 39 29 18 39 29 19 39 29 19 ERROR: Degenerate spline segment 35 32 2 38 30 18 39 27 18 39 27 18 40 27 21 ERROR: Degenerate spline segment 34 31 1 38 30 18 39 27 19 39 27 19 39 27 20 ERROR: Degenerate spline segment 34 31 1 38 30 18 39 26 19 39 26 19 39 27 20 ERROR: Degenerate spline segment 34 31 1 39 30 19 39 30 19 38 28 22 35 26 23 ERROR: Degenerate spline segment 34 31 1 38 31 19 38 31 19 39 28 22 35 26 23 ERROR: Degenerate spline segment 33 30 1 38 31 15 38 27 19 38 27 19 38 29 22 ERROR: Degenerate spline segment 33 30 1 38 31 16 37 27 19 37 27 19 38 29 22 ERROR: Degenerate spline segment 35 31 2 38 30 15 39 28 15 39 28 15 37 29 23 ERROR: Degenerate spline segment 33 29 3 38 31 12 38 27 18 38 27 18 39 29 20 ERROR: Degenerate spline segment 33 30 0 37 32 9 37 29 14 37 29 23 37 29 23 ERROR: Degenerate spline segment 35 30 0 37 32 9 37 29 14 38 29 23 38 29 23 ERROR: Degenerate spline segment 33 31 0 36 30 7 38 30 16 37 28 23 37 28 23 ERROR: Degenerate spline segment 32 31 2 34 31 3 38 29 16 38 29 16 37 29 26 ERROR: Degenerate spline segment 33 32 1 33 32 1 39 31 19 38 29 16 37 27 28 ERROR: Degenerate spline segment 34 32 2 34 32 2 39 31 19 38 29 16 36 25 27 ERROR: Degenerate spline segment 34 28 5 35 31 6 37 28 18 37 28 18 37 28 24 ERROR: Degenerate spline segment 34 29 3 35 32 6 39 28 20 39 28 20 37 28 24 ERROR: Degenerate spline segment 34 28 1 35 31 5 38 31 17 36 26 22 36 26 22 ERROR: Degenerate spline segment 32 31 1 32 31 1 35 31 4 39 29 23 40 27 21 ERROR: Degenerate spline segment 31 31 0 31 29 2 34 32 4 40 27 21 40 27 21 ERROR: Degenerate spline segment 31 32 1 34 30 3 34 30 3 39 29 23 40 27 21 ERROR: Degenerate spline segment 34 29 3 31 28 5 36 31 6 40 29 20 40 29 20 ERROR: Degenerate spline segment 33 30 2 33 29 5 36 31 7 40 29 20 40 29 20 ERROR: Degenerate spline segment 34 30 3 34 30 3 36 31 6 38 29 21 40 29 20 ERROR: Degenerate spline segment 33 29 2 36 34 10 36 34 10 39 29 16 38 26 22 ERROR: Degenerate spline segment 32 31 0 35 34 10 35 34 10 38 28 17 37 30 25 ERROR: Degenerate spline segment 32 31 1 36 34 10 36 34 10 38 28 17 37 30 25 ERROR: Degenerate spline segment 35 32 3 35 33 9 35 33 9 37 29 16 36 28 26 ERROR: Degenerate spline segment 35 30 1 34 31 3 37 30 11 36 28 25 36 28 25 ERROR: Degenerate spline segment 33 30 1 33 30 1 38 29 15 35 28 24 34 27 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt Done in 8.415 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt WARN: Initial control point 29 31 -1 is not in DWI volume - is DWI cropped? WARN: Replacing with closest point in volume (29 31 0) Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 2 of 18... Initializing MCMC ERROR: Degenerate spline segment 29 31 0 29 31 0 28 31 5 25 31 11 27 27 27 INFO: Path from initial control points is not entirely in mask INFO: or is self-intersecting INFO: Attemping to perturb control points ERROR: Degenerate spline segment 29 31 0 29 31 0 28 31 5 25 31 11 26 28 26 ERROR: Degenerate spline segment 29 31 0 29 31 0 28 31 5 24 30 11 27 27 27 ERROR: Degenerate spline segment 29 31 0 29 31 0 28 32 6 25 31 11 27 27 27 INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps ERROR: Degenerate spline segment 29 31 0 29 31 0 28 31 5 25 31 11 27 27 27 ERROR: Degenerate spline segment 30 28 2 30 28 2 29 29 6 25 32 12 29 27 26 ERROR: Degenerate spline segment 29 29 2 29 29 2 29 29 6 25 32 12 29 27 26 Running MCMC main jumps ERROR: Degenerate spline segment 30 28 2 30 28 2 32 30 5 26 28 12 29 27 26 ERROR: Degenerate spline segment 30 30 2 30 30 2 28 31 5 26 31 10 26 28 26 ERROR: Degenerate spline segment 31 31 2 31 31 2 27 33 7 26 31 10 26 28 26 ERROR: Degenerate spline segment 30 32 0 30 30 3 26 32 9 26 32 9 26 28 26 ERROR: Degenerate spline segment 29 32 3 28 30 5 26 31 9 26 31 9 26 28 26 ERROR: Degenerate spline segment 30 28 0 28 30 10 28 30 10 26 32 10 26 28 25 ERROR: Degenerate spline segment 30 30 1 30 30 1 29 32 6 26 33 11 28 27 26 ERROR: Degenerate spline segment 30 31 3 30 31 3 29 32 6 26 33 11 28 27 26 ERROR: Degenerate spline segment 30 30 0 30 30 0 30 29 3 26 30 12 28 27 26 ERROR: Degenerate spline segment 30 30 0 30 29 2 30 29 2 26 31 12 28 27 26 ERROR: Degenerate spline segment 30 30 0 29 29 2 29 29 2 26 33 13 28 27 26 ERROR: Degenerate spline segment 30 30 0 30 29 2 30 29 2 25 32 15 27 27 26 ERROR: Degenerate spline segment 29 30 0 29 29 3 29 29 3 26 34 15 27 27 26 ERROR: Degenerate spline segment 29 32 0 29 32 0 27 31 8 25 29 18 27 29 25 ERROR: Degenerate spline segment 31 31 2 31 31 2 26 31 9 26 31 15 26 28 25 ERROR: Degenerate spline segment 31 31 2 31 31 2 26 31 9 26 34 18 29 24 24 ERROR: Degenerate spline segment 30 32 2 30 32 2 27 32 9 26 34 18 29 25 23 ERROR: Degenerate spline segment 30 27 0 28 30 6 24 31 16 24 31 16 25 28 22 ERROR: Degenerate spline segment 29 31 4 28 32 6 26 34 15 26 34 15 25 28 22 ERROR: Degenerate spline segment 29 30 4 29 30 4 26 31 11 26 31 19 27 29 25 ERROR: Degenerate spline segment 31 29 1 31 29 1 29 33 6 26 31 13 30 26 26 ERROR: Degenerate spline segment 31 29 1 31 29 1 30 32 5 26 31 13 29 27 27 ERROR: Degenerate spline segment 29 30 2 29 31 5 29 31 5 26 31 11 26 28 25 ERROR: Degenerate spline segment 29 30 3 29 30 5 29 30 5 26 31 9 27 29 25 ERROR: Degenerate spline segment 30 28 3 32 28 3 32 28 3 26 31 9 27 28 26 ERROR: Degenerate spline segment 30 28 4 30 29 3 30 29 3 26 31 9 26 28 27 ERROR: Degenerate spline segment 30 28 4 30 28 4 32 28 3 26 31 9 26 28 27 ERROR: Degenerate spline segment 30 28 4 32 28 3 32 28 3 26 31 9 26 28 27 ERROR: Degenerate spline segment 30 28 4 30 28 4 32 28 1 26 31 9 26 27 27 ERROR: Degenerate spline segment 30 29 4 31 28 3 31 28 3 26 31 9 25 28 26 ERROR: Degenerate spline segment 30 29 4 30 28 2 30 28 2 27 32 9 25 28 27 ERROR: Degenerate spline segment 30 29 4 30 29 3 30 29 3 27 32 9 25 28 27 ERROR: Degenerate spline segment 32 31 1 32 31 1 33 28 3 27 32 8 26 28 26 ERROR: Degenerate spline segment 31 30 2 33 29 2 33 29 2 27 32 8 26 26 22 ERROR: Degenerate spline segment 31 30 2 31 30 2 31 29 0 27 32 8 26 26 22 ERROR: Degenerate spline segment 30 30 2 30 30 2 31 29 0 27 32 8 26 26 22 ERROR: Degenerate spline segment 29 30 3 29 30 3 30 31 5 27 35 10 26 25 21 ERROR: Degenerate spline segment 29 30 2 29 30 2 29 32 5 27 35 10 26 26 21 ERROR: Degenerate spline segment 31 30 2 30 30 4 30 30 4 27 34 9 26 26 21 ERROR: Degenerate spline segment 31 30 2 30 30 3 30 30 3 27 34 9 26 27 22 ERROR: Degenerate spline segment 29 31 1 29 29 4 29 29 4 27 33 9 26 27 22 ERROR: Degenerate spline segment 30 29 5 30 29 5 29 32 4 26 33 14 24 25 21 ERROR: Degenerate spline segment 31 28 5 31 28 5 29 31 5 26 32 14 24 25 21 ERROR: Degenerate spline segment 28 30 5 29 31 6 29 31 6 26 34 13 27 26 22 ERROR: Degenerate spline segment 30 29 2 30 29 2 29 32 6 25 32 15 26 28 24 ERROR: Degenerate spline segment 30 30 3 30 30 3 29 33 7 25 30 16 28 27 27 ERROR: Degenerate spline segment 30 30 2 30 30 2 30 31 3 25 32 15 29 24 24 ERROR: Degenerate spline segment 30 30 2 30 30 2 30 31 2 25 32 15 29 24 24 ERROR: Degenerate spline segment 30 30 2 29 30 2 29 30 2 25 32 15 29 24 24 ERROR: Degenerate spline segment 30 29 1 30 29 1 31 29 1 25 32 15 29 24 24 ERROR: Degenerate spline segment 31 29 1 31 30 0 31 30 0 25 32 15 28 24 23 ERROR: Degenerate spline segment 31 29 1 31 29 1 31 30 0 25 32 15 28 24 23 ERROR: Degenerate spline segment 31 29 1 31 30 0 31 30 0 25 32 15 28 24 23 ERROR: Degenerate spline segment 31 29 1 31 29 1 31 30 0 25 32 16 28 25 23 ERROR: Degenerate spline segment 31 30 2 30 29 1 30 29 1 25 35 17 29 25 25 ERROR: Degenerate spline segment 29 29 2 30 30 4 30 30 4 25 33 17 29 24 24 ERROR: Degenerate spline segment 30 28 4 30 28 4 29 30 2 25 32 18 30 23 25 ERROR: Degenerate spline segment 30 31 1 30 31 1 26 31 11 27 29 24 28 26 22 ERROR: Degenerate spline segment 31 31 1 31 31 1 26 32 11 27 30 24 26 27 21 ERROR: Degenerate spline segment 30 30 2 30 30 2 26 32 10 26 33 18 26 25 22 ERROR: Degenerate spline segment 30 32 2 30 32 2 26 33 18 30 25 24 30 23 25 ERROR: Degenerate spline segment 29 31 2 29 31 2 26 33 18 30 25 24 30 23 25 ERROR: Degenerate spline segment 30 30 3 30 31 0 25 32 16 30 24 25 30 24 25 ERROR: Degenerate spline segment 29 30 3 30 31 0 25 32 16 31 23 25 31 23 25 ERROR: Degenerate spline segment 29 30 2 30 31 0 25 32 16 30 24 25 30 24 25 ERROR: Degenerate spline segment 29 31 2 29 31 2 25 32 16 30 24 25 30 24 26 ERROR: Degenerate spline segment 29 31 1 30 30 3 25 32 16 29 24 25 29 24 25 ERROR: Degenerate spline segment 30 32 1 30 31 4 25 31 16 30 25 25 30 25 25 ERROR: Degenerate spline segment 30 32 1 30 31 4 25 31 16 30 25 25 30 25 25 ERROR: Degenerate spline segment 30 31 0 30 31 4 26 32 15 29 24 25 29 24 25 ERROR: Degenerate spline segment 28 30 2 28 30 2 26 35 15 27 26 22 28 26 25 ERROR: Degenerate spline segment 30 31 3 30 31 3 24 34 20 25 29 18 26 29 25 ERROR: Degenerate spline segment 30 28 3 28 33 9 25 33 18 26 28 22 26 28 22 ERROR: Degenerate spline segment 29 30 2 26 33 13 26 31 20 26 31 20 28 28 25 ERROR: Degenerate spline segment 31 31 1 25 32 13 25 30 18 25 30 18 29 27 26 ERROR: Degenerate spline segment 30 29 0 27 33 13 25 30 17 25 30 17 29 27 27 ERROR: Degenerate spline segment 30 29 1 30 29 1 24 34 17 27 28 21 27 26 22 ERROR: Degenerate spline segment 30 28 1 30 28 1 24 34 17 26 28 21 27 26 22 ERROR: Degenerate spline segment 30 30 1 30 30 1 25 32 16 27 28 19 27 28 26 ERROR: Degenerate spline segment 31 31 2 29 31 2 25 31 17 25 31 17 28 27 26 ERROR: Degenerate spline segment 29 30 3 29 30 3 25 35 18 26 31 20 28 27 26 ERROR: Degenerate spline segment 30 31 2 30 31 2 26 34 16 26 31 18 27 27 27 ERROR: Degenerate spline segment 29 30 1 29 30 1 26 33 15 25 32 16 28 27 26 ERROR: Degenerate spline segment 29 32 2 29 32 2 26 33 15 27 31 20 29 26 26 ERROR: Degenerate spline segment 31 31 1 29 31 1 25 33 17 25 33 17 30 27 27 ERROR: Degenerate spline segment 31 31 1 31 31 1 25 33 17 25 32 18 30 26 25 ERROR: Degenerate spline segment 30 32 1 30 32 1 25 33 17 25 32 18 30 26 25 ERROR: Degenerate spline segment 30 30 1 30 30 1 26 30 14 26 29 24 25 28 23 ERROR: Degenerate spline segment 30 29 5 30 29 5 26 33 13 26 28 24 25 28 24 ERROR: Degenerate spline segment 30 28 5 28 32 7 26 31 13 28 27 25 28 27 25 ERROR: Degenerate spline segment 29 29 4 28 32 7 26 32 15 28 27 25 28 27 25 ERROR: Degenerate spline segment 30 29 1 30 29 1 25 32 17 29 27 23 28 27 26 ERROR: Degenerate spline segment 30 28 1 30 28 1 26 33 18 29 30 23 28 26 22 ERROR: Degenerate spline segment 30 29 1 30 29 1 26 33 18 29 30 23 28 26 22 ERROR: Degenerate spline segment 30 30 1 30 30 1 26 32 18 29 30 23 28 25 23 ERROR: Degenerate spline segment 30 30 1 30 30 1 26 32 18 29 30 23 28 25 23 ERROR: Degenerate spline segment 29 29 1 29 29 1 26 32 18 29 30 23 28 25 23 ERROR: Degenerate spline segment 30 31 2 30 31 2 25 30 17 30 29 24 27 26 22 ERROR: Degenerate spline segment 32 31 1 32 31 1 26 32 11 27 29 23 23 27 19 ERROR: Degenerate spline segment 31 31 0 26 31 8 26 31 8 26 29 21 23 27 19 ERROR: Degenerate spline segment 31 31 0 25 32 9 25 32 9 26 29 21 23 27 19 ERROR: Degenerate spline segment 30 31 1 28 30 7 28 30 7 27 28 25 25 28 20 ERROR: Degenerate spline segment 29 31 3 29 31 3 26 31 13 28 29 25 25 28 21 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt Done in 7.515 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 43 38 3 42 29 5 41 23 5 41 23 5 39 16 7 Running MCMC main jumps ERROR: Degenerate spline segment 44 38 1 40 27 6 41 21 7 41 21 7 40 18 6 ERROR: Degenerate spline segment 43 38 0 40 28 8 40 28 8 39 19 11 35 12 6 ERROR: Degenerate spline segment 42 38 2 41 28 8 41 28 8 40 21 12 34 10 5 ERROR: Degenerate spline segment 44 39 2 40 28 8 40 28 8 41 20 13 34 10 5 ERROR: Degenerate spline segment 42 39 2 43 26 5 43 26 5 40 18 13 36 13 6 ERROR: Degenerate spline segment 41 37 1 42 26 4 42 26 4 39 22 16 36 13 6 ERROR: Degenerate spline segment 41 38 1 42 28 5 42 28 5 39 24 15 36 16 6 ERROR: Degenerate spline segment 40 38 0 40 28 6 40 28 6 39 24 15 36 16 6 ERROR: Degenerate spline segment 43 38 2 39 30 7 39 30 7 40 21 11 38 13 6 ERROR: Degenerate spline segment 44 40 2 41 25 5 41 25 5 42 22 11 39 17 7 ERROR: Degenerate spline segment 44 38 1 40 33 5 40 33 5 40 25 11 35 12 7 ERROR: Degenerate spline segment 44 38 1 40 33 5 40 33 5 40 25 11 35 12 7 ERROR: Degenerate spline segment 44 37 6 43 35 5 41 22 8 41 22 8 39 15 4 ERROR: Degenerate spline segment 44 37 6 43 35 5 41 22 8 41 22 8 39 15 4 ERROR: Degenerate spline segment 44 37 6 43 35 5 41 22 9 41 22 9 39 15 4 ERROR: Degenerate spline segment 44 37 6 42 33 4 41 22 8 41 22 8 39 15 4 ERROR: Degenerate spline segment 44 37 5 44 37 5 41 22 9 41 18 5 40 15 2 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt Done in 4.107 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 4 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 21 41 3 21 41 3 24 28 7 22 21 4 27 12 6 ERROR: Degenerate spline segment 21 43 3 21 43 3 24 28 7 22 21 4 27 12 6 ERROR: Degenerate spline segment 21 43 3 21 43 3 24 28 7 22 21 4 27 12 6 ERROR: Degenerate spline segment 21 43 3 21 43 3 24 28 7 22 21 4 27 12 6 ERROR: Degenerate spline segment 21 40 0 21 40 0 23 28 8 23 21 8 28 12 7 ERROR: Degenerate spline segment 21 39 0 21 39 0 23 28 8 23 20 8 28 12 7 ERROR: Degenerate spline segment 21 39 1 21 39 1 22 27 8 22 23 12 28 12 7 ERROR: Degenerate spline segment 21 39 1 21 39 1 22 27 8 21 23 11 28 12 7 ERROR: Degenerate spline segment 21 39 1 21 39 1 22 26 8 21 23 11 28 12 7 ERROR: Degenerate spline segment 20 39 1 20 39 1 23 29 8 22 22 8 28 12 8 ERROR: Degenerate spline segment 21 40 2 21 36 4 23 27 8 23 27 8 27 13 6 ERROR: Degenerate spline segment 21 37 0 24 21 11 24 21 11 22 23 9 26 12 11 ERROR: Degenerate spline segment 21 38 1 24 22 13 24 22 13 22 23 6 26 13 10 ERROR: Degenerate spline segment 21 40 1 21 33 5 24 18 7 24 18 7 26 13 10 ERROR: Degenerate spline segment 21 40 1 22 34 6 23 19 7 23 19 7 26 13 10 ERROR: Degenerate spline segment 21 38 1 23 40 2 22 21 9 28 13 6 28 13 6 ERROR: Degenerate spline segment 21 40 1 21 40 1 21 19 6 28 14 7 27 12 6 ERROR: Degenerate spline segment 21 40 1 21 40 1 22 18 7 28 14 7 27 12 6 ERROR: Degenerate spline segment 20 41 1 22 40 3 24 21 7 29 13 7 29 13 7 ERROR: Degenerate spline segment 22 40 1 22 40 1 23 21 9 27 13 8 27 11 6 ERROR: Degenerate spline segment 21 42 4 21 42 4 24 16 9 28 13 9 26 15 7 ERROR: Degenerate spline segment 21 42 2 21 42 2 24 17 10 28 15 8 25 14 7 ERROR: Degenerate spline segment 22 40 2 22 40 2 23 19 9 28 14 8 25 14 7 ERROR: Degenerate spline segment 23 43 2 22 41 2 23 19 7 23 19 7 27 14 7 ERROR: Degenerate spline segment 22 38 1 22 38 1 23 20 8 27 15 10 27 13 6 ERROR: Degenerate spline segment 22 41 0 22 41 0 23 20 7 25 15 10 29 11 8 ERROR: Degenerate spline segment 22 41 0 22 41 0 23 20 7 25 15 10 29 11 8 ERROR: Degenerate spline segment 22 41 0 22 41 0 23 20 7 25 15 10 29 11 8 ERROR: Degenerate spline segment 22 40 1 22 40 1 23 20 8 25 16 10 28 12 8 ERROR: Degenerate spline segment 20 39 1 22 39 1 23 22 11 28 13 8 28 13 8 ERROR: Degenerate spline segment 21 39 2 21 39 2 23 22 11 27 14 8 27 14 7 ERROR: Degenerate spline segment 21 39 2 21 39 2 23 23 10 27 14 8 28 14 7 ERROR: Degenerate spline segment 21 40 2 21 39 2 23 23 10 28 14 7 28 14 7 ERROR: Degenerate spline segment 20 39 1 20 37 0 23 22 10 28 13 6 28 13 6 ERROR: Degenerate spline segment 21 38 0 21 38 0 23 21 10 27 13 7 28 13 6 ERROR: Degenerate spline segment 20 39 1 21 38 0 23 21 10 28 13 6 28 13 6 ERROR: Degenerate spline segment 20 40 1 21 38 0 23 21 10 27 13 7 27 13 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt Done in 4.507 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt WARN: Initial control point 42 43 3 is not in mask WARN: Replacing with closest point in mask (42 42 3) Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 5 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 36 43 6 37 41 9 41 34 4 41 34 4 43 39 1 ERROR: Degenerate spline segment 36 46 7 39 39 11 40 33 7 40 33 7 42 41 1 ERROR: Degenerate spline segment 35 47 7 39 39 11 38 32 7 38 32 7 43 40 1 ERROR: Degenerate spline segment 35 47 7 39 39 11 39 32 6 39 32 6 43 39 1 ERROR: Degenerate spline segment 35 44 7 38 44 13 39 20 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 35 44 7 37 44 12 39 20 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 35 43 7 37 44 12 39 20 14 43 39 1 43 39 1 ERROR: Degenerate spline segment 35 43 7 37 45 12 39 22 14 42 40 0 42 40 0 ERROR: Degenerate spline segment 35 43 7 37 44 13 40 22 12 42 40 0 42 40 0 ERROR: Degenerate spline segment 35 43 7 37 44 13 40 22 12 42 40 0 42 40 0 ERROR: Degenerate spline segment 35 43 7 37 44 13 40 22 12 42 40 0 42 40 0 ERROR: Degenerate spline segment 35 43 7 37 44 17 40 23 12 42 40 0 42 40 0 ERROR: Degenerate spline segment 35 43 7 37 44 17 39 24 13 42 39 0 42 39 0 ERROR: Degenerate spline segment 35 43 7 36 45 15 39 24 13 42 39 0 42 39 0 ERROR: Degenerate spline segment 35 43 7 37 44 15 39 24 13 42 40 1 42 40 1 ERROR: Degenerate spline segment 35 43 7 37 44 15 39 24 13 42 40 0 42 40 0 ERROR: Degenerate spline segment 35 43 7 36 44 15 39 24 12 42 40 1 42 40 1 ERROR: Degenerate spline segment 35 43 7 36 44 15 39 24 12 42 40 1 42 40 1 ERROR: Degenerate spline segment 35 43 7 36 44 15 39 24 12 43 40 1 43 40 1 ERROR: Degenerate spline segment 35 43 7 37 43 16 39 25 12 42 40 1 42 40 1 ERROR: Degenerate spline segment 35 43 7 37 43 16 39 24 13 42 40 1 42 40 1 ERROR: Degenerate spline segment 35 43 7 37 44 17 39 24 13 43 41 1 43 41 1 ERROR: Degenerate spline segment 35 43 7 37 44 17 39 24 13 43 41 1 43 41 1 ERROR: Degenerate spline segment 35 43 7 37 44 17 39 24 13 43 41 1 43 41 1 ERROR: Degenerate spline segment 35 43 7 37 44 17 39 24 13 42 40 1 42 40 1 ERROR: Degenerate spline segment 36 44 7 36 44 16 40 23 13 42 40 1 42 40 1 ERROR: Degenerate spline segment 35 44 7 36 44 16 40 23 13 43 41 1 43 41 1 ERROR: Degenerate spline segment 36 45 7 36 44 16 39 25 12 43 41 2 43 41 2 ERROR: Degenerate spline segment 37 46 7 36 45 16 39 25 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 37 46 7 36 45 16 39 25 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 37 46 7 36 45 16 39 25 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 37 44 7 36 45 16 39 25 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 37 42 8 36 45 15 40 26 12 42 40 0 42 40 0 ERROR: Degenerate spline segment 37 42 8 36 45 15 40 26 12 42 39 0 42 39 0 ERROR: Degenerate spline segment 37 42 8 36 45 15 40 26 12 42 39 0 42 39 0 ERROR: Degenerate spline segment 37 42 8 36 45 15 39 26 12 42 39 0 42 39 0 ERROR: Degenerate spline segment 37 42 8 39 44 14 39 28 11 42 40 0 42 40 0 ERROR: Degenerate spline segment 37 42 8 38 43 13 39 28 11 42 40 0 42 40 0 ERROR: Degenerate spline segment 37 40 6 37 44 13 37 29 12 42 40 0 42 40 0 ERROR: Degenerate spline segment 37 40 5 37 44 13 39 29 12 43 39 1 43 39 1 ERROR: Degenerate spline segment 37 41 6 38 43 14 37 30 8 43 39 1 43 39 1 ERROR: Degenerate spline segment 36 47 8 36 47 8 37 29 12 42 34 3 38 39 2 ERROR: Degenerate spline segment 36 48 7 36 48 7 37 43 10 41 32 5 43 40 2 ERROR: Degenerate spline segment 34 49 7 34 49 7 37 42 9 41 33 5 43 40 4 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt Done in 4.218 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 6 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 24 42 2 23 37 3 23 37 3 27 44 14 25 50 8 ERROR: Degenerate spline segment 24 42 2 23 37 3 23 37 3 27 44 14 25 50 8 ERROR: Degenerate spline segment 23 42 2 20 36 3 29 38 8 29 49 6 29 49 6 ERROR: Degenerate spline segment 23 43 2 19 38 1 26 38 6 29 47 7 29 47 7 ERROR: Degenerate spline segment 23 43 3 19 38 1 26 38 6 29 47 7 29 47 7 ERROR: Degenerate spline segment 22 43 3 20 38 1 26 38 6 28 46 7 28 46 7 ERROR: Degenerate spline segment 22 43 3 20 38 1 26 38 6 28 46 7 28 46 7 ERROR: Degenerate spline segment 20 41 3 20 38 1 26 38 6 29 46 7 29 46 7 ERROR: Degenerate spline segment 21 42 2 20 38 1 25 37 7 29 46 7 29 46 7 ERROR: Degenerate spline segment 20 40 2 22 35 3 25 35 6 28 41 6 28 41 6 ERROR: Degenerate spline segment 20 41 2 23 36 3 22 37 6 26 39 6 26 39 6 ERROR: Degenerate spline segment 19 39 2 23 36 4 23 36 4 28 40 7 26 42 7 ERROR: Degenerate spline segment 19 40 3 22 34 4 23 35 6 28 40 7 28 40 7 ERROR: Degenerate spline segment 21 39 4 22 34 4 26 34 7 25 42 6 25 42 6 ERROR: Degenerate spline segment 21 39 3 22 33 5 25 34 7 26 42 9 26 42 9 ERROR: Degenerate spline segment 21 41 3 22 34 3 25 38 9 25 38 9 29 45 7 ERROR: Degenerate spline segment 21 39 1 20 33 3 26 39 7 26 39 7 29 44 7 ERROR: Degenerate spline segment 21 39 1 21 34 4 28 40 7 28 40 7 30 43 8 ERROR: Degenerate spline segment 20 41 2 22 35 4 26 36 7 29 43 7 29 43 7 ERROR: Degenerate spline segment 20 41 2 22 35 4 26 37 7 29 43 7 29 43 7 ERROR: Degenerate spline segment 23 39 2 21 34 4 26 36 7 26 41 7 26 41 7 ERROR: Degenerate spline segment 21 41 2 19 35 0 25 38 6 25 40 6 25 40 6 ERROR: Degenerate spline segment 21 41 2 21 35 1 25 39 6 25 39 6 25 41 5 ERROR: Degenerate spline segment 20 40 2 23 37 5 23 37 5 26 39 7 28 44 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt Done in 4.544 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.txt WARN: Initial start point 32 11 15 is not in start ROI WARN: Replacing with closest point in start ROI (32 11 14) Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 7 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 32 11 14 36 13 11 34 12 13 33 12 14 33 12 14 ERROR: Degenerate spline segment 33 11 15 36 13 11 34 12 13 34 12 13 34 11 14 ERROR: Degenerate spline segment 33 11 15 36 13 11 34 12 13 34 11 14 34 11 14 ERROR: Degenerate spline segment 33 11 15 36 13 11 34 12 13 33 12 14 33 12 14 ERROR: Degenerate spline segment 33 11 15 38 16 12 34 12 13 34 11 14 34 11 14 ERROR: Degenerate spline segment 33 11 15 38 16 12 34 12 13 34 12 13 34 11 14 ERROR: Degenerate spline segment 33 11 15 38 16 12 34 12 13 34 12 13 34 11 14 ERROR: Degenerate spline segment 33 11 15 37 15 12 33 12 13 34 11 14 34 11 14 ERROR: Degenerate spline segment 33 11 15 37 15 12 33 11 14 33 11 14 34 11 14 ERROR: Degenerate spline segment 35 10 14 37 15 12 34 13 15 34 13 15 33 11 13 ERROR: Degenerate spline segment 35 12 15 37 15 12 34 13 15 34 13 15 33 11 13 ERROR: Degenerate spline segment 35 12 15 37 14 13 34 13 15 34 13 15 33 11 13 ERROR: Degenerate spline segment 36 13 15 35 14 12 35 14 12 34 13 14 33 12 14 ERROR: Degenerate spline segment 37 13 15 36 13 14 35 14 14 35 13 15 35 13 15 ERROR: Degenerate spline segment 37 13 15 36 13 14 35 13 15 35 13 15 34 13 15 ERROR: Degenerate spline segment 36 11 15 36 13 14 36 13 15 36 13 15 34 13 14 ERROR: Degenerate spline segment 37 13 16 36 13 14 37 14 13 34 13 14 34 13 14 ERROR: Degenerate spline segment 37 14 16 37 14 16 37 14 14 35 13 14 34 11 14 ERROR: Degenerate spline segment 37 14 16 37 14 16 36 13 16 35 13 14 34 11 14 ERROR: Degenerate spline segment 37 14 16 37 14 16 36 13 16 35 13 14 34 11 14 ERROR: Degenerate spline segment 37 13 15 37 13 15 36 13 16 35 13 14 34 11 14 Running MCMC main jumps ERROR: Degenerate spline segment 35 12 16 36 13 17 36 13 17 34 13 14 33 12 13 ERROR: Degenerate spline segment 35 12 16 36 12 16 36 13 16 34 13 14 34 13 14 ERROR: Degenerate spline segment 35 12 16 36 12 16 36 13 16 33 12 13 33 12 13 ERROR: Degenerate spline segment 35 12 16 36 12 16 36 12 16 34 13 14 33 12 13 ERROR: Degenerate spline segment 35 12 16 36 13 16 36 13 16 34 13 14 33 12 13 ERROR: Degenerate spline segment 35 12 16 35 13 15 35 13 15 34 13 15 33 12 13 ERROR: Degenerate spline segment 35 12 16 36 13 15 34 13 15 34 13 15 33 12 13 ERROR: Degenerate spline segment 37 12 16 35 13 15 35 13 15 34 13 15 33 12 13 ERROR: Degenerate spline segment 37 12 16 36 13 15 35 13 15 34 13 15 34 13 15 ERROR: Degenerate spline segment 36 13 17 36 13 15 36 13 15 34 13 15 34 12 14 ERROR: Degenerate spline segment 36 13 17 35 13 15 35 13 15 34 13 15 34 12 14 ERROR: Degenerate spline segment 34 12 16 36 13 15 36 13 15 34 13 15 33 12 14 ERROR: Degenerate spline segment 36 11 14 36 13 15 35 13 15 35 13 15 33 12 14 ERROR: Degenerate spline segment 36 12 14 37 13 14 35 13 14 35 13 14 35 12 15 ERROR: Degenerate spline segment 37 12 15 36 14 14 36 14 14 34 13 12 33 10 13 ERROR: Degenerate spline segment 37 12 15 37 14 11 34 14 13 34 12 13 34 12 13 ERROR: Degenerate spline segment 37 12 15 37 14 11 34 14 13 34 14 13 34 12 13 ERROR: Degenerate spline segment 37 12 15 36 15 12 35 13 13 34 12 12 34 12 12 ERROR: Degenerate spline segment 37 13 15 36 15 12 34 14 12 34 12 12 34 12 12 ERROR: Degenerate spline segment 37 13 15 36 15 12 35 15 14 34 12 12 34 12 12 ERROR: Degenerate spline segment 36 12 16 37 16 13 37 15 15 34 12 12 34 12 12 ERROR: Degenerate spline segment 36 12 16 37 16 13 37 15 15 34 12 12 34 12 12 ERROR: Degenerate spline segment 36 13 13 38 23 17 32 26 14 32 26 14 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 17 33 27 15 33 27 15 37 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 17 33 27 15 33 27 15 37 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 17 33 27 15 33 27 15 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 17 33 26 15 33 26 15 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 15 33 26 15 33 26 15 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 15 33 26 15 33 26 15 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 16 33 27 15 33 27 15 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 16 33 27 15 33 27 15 38 11 8 ERROR: Degenerate spline segment 36 13 13 38 23 16 33 26 14 33 26 14 38 11 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt Done in 5.298 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.txt WARN: Initial control point 30 54 12 is not in mask WARN: Replacing with closest point in mask (30 53 12) Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 8 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 30 53 12 27 47 11 33 43 11 34 51 13 34 51 13 ERROR: Degenerate spline segment 30 53 11 26 47 13 33 43 11 35 51 12 35 51 12 Running MCMC main jumps ERROR: Degenerate spline segment 30 49 18 27 45 17 31 43 13 35 51 10 35 51 10 ERROR: Degenerate spline segment 30 49 18 27 45 17 31 43 13 35 51 10 35 51 10 ERROR: Degenerate spline segment 29 49 19 27 45 19 30 42 13 35 51 10 35 51 10 ERROR: Degenerate spline segment 29 49 19 28 41 21 30 37 16 35 51 11 35 51 11 ERROR: Degenerate spline segment 30 47 19 28 45 14 33 44 11 36 50 16 36 50 16 ERROR: Degenerate spline segment 30 47 19 28 45 14 33 44 11 35 50 15 35 50 15 ERROR: Degenerate spline segment 30 47 19 28 45 14 33 44 11 35 50 15 35 50 15 ERROR: Degenerate spline segment 30 47 19 28 45 14 33 44 11 36 50 16 36 50 16 ERROR: Degenerate spline segment 30 47 19 28 45 14 33 44 11 35 50 15 35 50 15 ERROR: Degenerate spline segment 30 49 20 28 45 14 34 44 12 36 49 15 36 49 15 ERROR: Degenerate spline segment 30 50 18 28 44 14 34 44 12 36 48 16 36 48 16 ERROR: Degenerate spline segment 30 50 18 28 44 14 34 44 12 36 48 16 36 48 16 ERROR: Degenerate spline segment 30 50 18 28 44 14 34 44 12 36 49 15 36 49 15 ERROR: Degenerate spline segment 29 47 18 27 44 11 34 44 12 36 49 14 36 49 14 ERROR: Degenerate spline segment 28 50 13 28 50 13 30 42 14 35 47 12 36 49 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt Done in 3.997 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 9 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 34 32 12 38 37 11 38 37 11 37 49 10 37 50 10 ERROR: Degenerate spline segment 33 31 11 37 37 11 37 37 11 37 47 9 38 51 11 ERROR: Degenerate spline segment 33 31 11 37 37 11 37 37 11 37 47 9 38 51 11 ERROR: Degenerate spline segment 33 31 11 38 37 11 38 37 11 37 47 9 38 51 11 ERROR: Degenerate spline segment 33 31 11 37 38 13 37 38 13 37 47 9 38 51 11 ERROR: Degenerate spline segment 33 31 11 37 38 13 37 38 13 37 47 9 38 51 11 ERROR: Degenerate spline segment 33 31 11 38 39 12 38 39 12 37 47 9 38 51 10 ERROR: Degenerate spline segment 33 31 11 38 39 12 38 39 12 38 48 9 37 49 9 ERROR: Degenerate spline segment 33 31 11 37 38 13 37 38 13 36 49 9 37 49 9 Running MCMC main jumps ERROR: Degenerate spline segment 34 33 10 38 39 12 38 39 12 40 49 7 36 49 8 ERROR: Degenerate spline segment 34 33 10 37 38 13 37 38 13 39 45 9 36 49 8 ERROR: Degenerate spline segment 34 33 10 37 38 13 37 38 13 38 45 10 36 49 8 ERROR: Degenerate spline segment 35 34 11 35 34 11 38 37 17 38 47 11 37 50 11 ERROR: Degenerate spline segment 34 31 12 36 36 11 38 38 16 36 51 9 36 51 9 ERROR: Degenerate spline segment 34 31 12 36 35 12 38 38 16 37 49 9 37 49 9 ERROR: Degenerate spline segment 34 33 10 37 36 16 37 36 16 37 46 9 34 53 10 ERROR: Degenerate spline segment 33 32 8 37 38 12 38 43 13 38 43 13 37 51 11 ERROR: Degenerate spline segment 34 32 12 37 41 11 37 41 11 39 48 9 37 51 9 ERROR: Degenerate spline segment 34 32 12 38 41 14 37 42 10 37 49 12 37 49 12 ERROR: Degenerate spline segment 33 33 11 37 37 12 37 47 10 39 47 12 39 47 12 ERROR: Degenerate spline segment 33 33 11 37 37 12 38 47 13 38 47 13 39 47 12 ERROR: Degenerate spline segment 33 33 11 37 38 12 38 47 13 39 47 12 39 47 12 ERROR: Degenerate spline segment 35 32 12 37 38 12 37 47 12 37 47 12 40 46 12 ERROR: Degenerate spline segment 35 32 12 37 38 12 38 47 13 38 47 13 40 46 12 ERROR: Degenerate spline segment 34 32 13 36 36 11 37 45 11 37 45 11 40 46 12 ERROR: Degenerate spline segment 34 32 10 36 36 12 37 45 9 37 45 9 38 46 14 ERROR: Degenerate spline segment 36 33 13 37 42 11 38 42 9 38 42 9 39 48 14 ERROR: Degenerate spline segment 35 32 13 37 42 11 38 42 9 38 42 9 39 48 14 ERROR: Degenerate spline segment 35 31 13 38 42 11 37 42 9 37 42 9 39 48 14 ERROR: Degenerate spline segment 35 32 11 38 43 10 38 43 10 37 42 9 39 48 13 ERROR: Degenerate spline segment 35 32 11 38 42 11 37 42 9 37 42 9 39 48 13 ERROR: Degenerate spline segment 36 32 12 37 39 14 38 40 11 42 49 11 42 49 11 ERROR: Degenerate spline segment 34 32 10 36 37 12 37 42 10 38 49 11 38 49 11 ERROR: Degenerate spline segment 34 32 10 36 37 12 37 42 10 38 49 11 38 49 11 ERROR: Degenerate spline segment 34 34 10 39 36 14 37 40 11 39 49 10 39 49 10 ERROR: Degenerate spline segment 34 34 10 39 36 14 37 40 11 38 49 11 38 49 11 ERROR: Degenerate spline segment 35 30 8 36 32 13 37 41 12 36 50 11 36 50 11 ERROR: Degenerate spline segment 34 31 10 40 32 16 38 46 13 35 51 7 35 51 7 ERROR: Degenerate spline segment 34 31 10 40 32 16 38 46 13 35 51 7 35 51 7 ERROR: Degenerate spline segment 34 31 10 40 32 16 37 46 14 35 51 7 35 51 7 ERROR: Degenerate spline segment 34 31 10 40 32 16 37 46 14 35 51 7 35 51 7 ERROR: Degenerate spline segment 33 32 10 37 34 13 36 45 17 36 45 17 37 52 10 ERROR: Degenerate spline segment 33 32 10 37 34 13 36 45 17 36 45 17 38 51 9 ERROR: Degenerate spline segment 34 31 11 37 34 13 36 45 16 36 45 16 36 50 10 ERROR: Degenerate spline segment 33 32 9 38 35 14 37 44 16 37 44 16 36 51 10 ERROR: Degenerate spline segment 35 31 12 35 31 12 38 41 15 37 43 15 38 49 10 ERROR: Degenerate spline segment 35 31 11 35 31 12 37 43 15 37 43 15 38 49 10 ERROR: Degenerate spline segment 34 33 8 34 33 8 38 37 18 35 47 13 37 50 11 ERROR: Degenerate spline segment 34 33 9 34 33 9 38 41 16 36 47 10 37 51 10 ERROR: Degenerate spline segment 34 33 9 34 33 9 38 41 16 36 47 10 37 51 10 ERROR: Degenerate spline segment 33 33 9 33 33 9 38 41 16 36 47 10 37 51 10 ERROR: Degenerate spline segment 34 33 9 34 33 9 38 41 16 36 47 10 37 51 10 ERROR: Degenerate spline segment 33 33 9 33 33 9 38 41 16 36 47 10 37 51 10 ERROR: Degenerate spline segment 34 33 10 37 35 11 39 36 15 37 50 11 37 50 11 ERROR: Degenerate spline segment 33 31 9 38 34 14 38 37 14 37 50 12 37 50 12 ERROR: Degenerate spline segment 34 34 10 37 34 14 36 45 15 37 49 12 37 49 12 ERROR: Degenerate spline segment 33 34 9 38 34 16 38 42 13 38 42 13 36 52 11 ERROR: Degenerate spline segment 33 34 9 38 34 16 38 42 13 38 42 13 36 53 12 ERROR: Degenerate spline segment 33 34 9 38 34 16 38 42 13 38 42 13 36 53 12 ERROR: Degenerate spline segment 36 33 13 36 33 11 38 40 10 38 40 10 36 52 12 ERROR: Degenerate spline segment 35 33 12 34 32 10 38 41 10 38 41 10 35 53 12 ERROR: Degenerate spline segment 34 32 11 34 32 11 38 41 10 37 43 10 35 51 10 ERROR: Degenerate spline segment 35 33 11 35 33 11 38 39 14 37 44 15 37 50 9 ERROR: Degenerate spline segment 35 33 12 38 42 11 38 42 11 38 47 11 40 45 13 ERROR: Degenerate spline segment 34 31 12 37 43 10 37 43 10 39 44 11 39 47 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt Done in 5.166 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 10 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 24 50 13 25 48 13 27 41 12 27 41 12 30 33 11 ERROR: Degenerate spline segment 24 50 13 24 50 13 27 43 12 27 41 12 30 33 11 ERROR: Degenerate spline segment 24 50 13 27 48 10 26 40 14 26 40 14 28 33 12 Running MCMC main jumps ERROR: Degenerate spline segment 24 50 13 27 48 11 26 41 14 26 41 14 28 33 12 ERROR: Degenerate spline segment 23 48 12 26 45 12 26 45 12 26 40 14 28 32 11 ERROR: Degenerate spline segment 24 48 13 24 48 13 27 50 11 25 43 10 30 33 12 ERROR: Degenerate spline segment 24 48 13 25 49 13 26 43 9 26 43 9 28 32 12 ERROR: Degenerate spline segment 23 48 12 25 49 13 27 45 11 27 45 11 28 33 13 ERROR: Degenerate spline segment 23 48 12 25 49 13 27 45 11 27 45 11 28 31 13 ERROR: Degenerate spline segment 23 48 12 25 49 13 26 44 11 26 44 11 28 31 13 ERROR: Degenerate spline segment 26 49 12 24 47 12 24 47 12 26 44 11 28 31 13 ERROR: Degenerate spline segment 25 48 12 25 48 12 25 46 13 26 44 11 28 31 13 ERROR: Degenerate spline segment 25 48 12 25 47 12 25 47 12 25 46 12 28 31 13 ERROR: Degenerate spline segment 24 47 12 24 46 13 24 46 13 25 46 11 28 32 12 ERROR: Degenerate spline segment 24 47 12 25 46 12 25 46 12 25 46 11 28 32 12 ERROR: Degenerate spline segment 24 48 10 25 46 11 25 46 11 26 44 12 28 32 12 ERROR: Degenerate spline segment 21 47 11 25 45 11 25 45 11 27 44 10 28 32 11 ERROR: Degenerate spline segment 21 46 12 24 45 11 24 45 11 27 45 10 28 32 11 ERROR: Degenerate spline segment 23 47 10 22 46 9 27 45 10 27 45 10 28 32 11 ERROR: Degenerate spline segment 25 47 12 23 46 9 26 47 10 26 47 10 28 32 12 ERROR: Degenerate spline segment 25 47 12 23 46 9 26 47 10 26 47 10 29 32 12 ERROR: Degenerate spline segment 25 47 12 26 46 10 26 46 10 26 48 9 29 32 12 ERROR: Degenerate spline segment 25 48 11 25 48 11 26 45 12 26 48 9 29 32 12 ERROR: Degenerate spline segment 27 49 13 24 44 13 24 44 13 24 46 10 28 35 12 ERROR: Degenerate spline segment 27 49 13 26 44 10 25 46 11 25 46 11 28 35 12 ERROR: Degenerate spline segment 27 49 13 26 46 10 25 46 11 25 46 11 28 35 12 ERROR: Degenerate spline segment 26 48 14 26 48 14 24 44 13 23 46 10 29 35 12 ERROR: Degenerate spline segment 26 49 12 26 49 12 23 47 13 22 47 11 29 34 11 ERROR: Degenerate spline segment 26 49 12 26 49 12 23 47 13 22 47 11 29 34 11 ERROR: Degenerate spline segment 26 49 12 26 49 12 23 47 13 23 47 9 30 33 11 ERROR: Degenerate spline segment 26 49 12 26 49 12 24 47 10 22 48 9 30 33 11 ERROR: Degenerate spline segment 26 49 12 26 47 9 24 47 9 24 47 9 29 34 11 ERROR: Degenerate spline segment 27 49 13 28 51 8 24 47 9 24 47 9 28 33 11 ERROR: Degenerate spline segment 29 52 13 27 51 8 23 49 10 23 49 10 30 32 11 ERROR: Degenerate spline segment 28 51 12 28 51 12 24 47 9 23 49 10 30 31 10 ERROR: Degenerate spline segment 28 51 12 27 49 9 23 49 10 23 49 10 30 32 11 ERROR: Degenerate spline segment 28 51 9 27 50 10 25 48 9 25 48 9 28 33 13 ERROR: Degenerate spline segment 28 51 9 27 50 12 25 48 10 25 48 10 28 33 13 ERROR: Degenerate spline segment 28 52 12 28 52 12 25 48 10 23 50 10 28 33 13 ERROR: Degenerate spline segment 28 52 12 27 50 12 25 48 10 25 48 10 28 33 13 ERROR: Degenerate spline segment 27 52 12 27 52 12 26 51 11 23 50 10 28 33 13 ERROR: Degenerate spline segment 26 52 12 27 50 12 27 50 12 23 49 12 28 33 13 ERROR: Degenerate spline segment 26 52 12 26 52 12 27 50 10 23 49 12 28 33 13 ERROR: Degenerate spline segment 26 52 12 26 52 12 27 50 10 23 49 12 28 33 13 ERROR: Degenerate spline segment 26 52 12 27 50 12 27 50 12 23 49 12 28 33 13 ERROR: Degenerate spline segment 26 52 12 26 52 12 27 50 10 23 49 12 28 33 13 ERROR: Degenerate spline segment 25 53 12 27 50 12 27 50 12 23 50 12 28 33 13 ERROR: Degenerate spline segment 26 53 12 28 51 12 24 49 11 24 49 11 29 32 12 ERROR: Degenerate spline segment 27 53 13 27 53 13 27 49 11 24 49 12 29 32 12 ERROR: Degenerate spline segment 28 53 11 28 53 11 26 49 12 24 49 12 29 32 12 ERROR: Degenerate spline segment 27 50 11 28 52 10 26 47 10 26 47 10 28 33 12 ERROR: Degenerate spline segment 28 52 10 28 52 10 27 48 11 25 48 11 28 33 12 ERROR: Degenerate spline segment 26 51 11 27 48 12 26 48 10 26 48 10 28 33 12 ERROR: Degenerate spline segment 26 51 11 27 48 12 26 48 10 26 48 10 28 33 12 ERROR: Degenerate spline segment 26 51 11 26 48 11 26 48 11 25 48 11 28 33 12 ERROR: Degenerate spline segment 26 51 11 26 48 11 25 49 11 25 49 11 29 31 12 ERROR: Degenerate spline segment 26 51 11 26 48 11 26 48 11 25 48 11 29 31 12 ERROR: Degenerate spline segment 26 53 12 26 49 8 26 49 8 25 45 10 29 31 10 ERROR: Degenerate spline segment 27 51 11 27 51 11 27 49 9 26 43 11 29 33 11 ERROR: Degenerate spline segment 27 52 11 27 52 11 27 49 9 26 43 11 29 33 11 ERROR: Degenerate spline segment 26 52 10 27 50 9 27 50 9 26 43 11 29 32 12 ERROR: Degenerate spline segment 26 48 12 26 46 12 26 46 12 27 41 10 29 32 12 ERROR: Degenerate spline segment 27 49 13 27 49 13 26 46 9 26 41 10 28 32 11 ERROR: Degenerate spline segment 26 50 13 27 48 14 27 48 14 26 41 14 28 32 11 ERROR: Degenerate spline segment 26 50 13 27 48 14 27 48 14 26 41 14 28 32 11 ERROR: Degenerate spline segment 26 50 13 27 48 14 27 48 14 26 41 14 28 32 11 ERROR: Degenerate spline segment 26 49 11 26 49 11 28 45 18 26 42 15 28 32 11 ERROR: Degenerate spline segment 27 50 11 27 50 11 28 44 17 26 42 15 28 32 11 ERROR: Degenerate spline segment 26 50 10 26 47 13 26 47 13 25 40 14 29 32 10 ERROR: Degenerate spline segment 27 53 11 26 46 14 26 46 14 24 44 13 29 31 12 ERROR: Degenerate spline segment 27 53 11 26 46 14 26 46 14 24 44 13 29 31 12 ERROR: Degenerate spline segment 27 53 11 26 46 14 26 46 14 23 43 15 29 31 12 ERROR: Degenerate spline segment 25 48 10 25 48 10 27 47 12 26 41 13 28 32 11 ERROR: Degenerate spline segment 27 50 10 26 47 13 26 47 13 27 44 14 29 33 12 ERROR: Degenerate spline segment 26 51 12 26 51 12 26 47 13 26 41 14 28 32 11 ERROR: Degenerate spline segment 26 51 12 26 51 12 26 47 13 26 41 14 28 32 11 ERROR: Degenerate spline segment 26 49 11 26 49 11 26 47 13 26 41 14 28 32 11 ERROR: Degenerate spline segment 29 51 9 27 46 14 27 46 14 25 39 14 28 32 12 ERROR: Degenerate spline segment 29 50 7 26 45 13 26 45 13 26 40 14 28 32 12 ERROR: Degenerate spline segment 26 51 10 26 46 13 26 46 13 26 41 12 28 32 12 ERROR: Degenerate spline segment 26 51 10 27 45 14 27 45 14 26 41 12 28 32 12 ERROR: Degenerate spline segment 27 52 11 27 44 17 27 44 17 26 40 13 28 33 13 ERROR: Degenerate spline segment 27 52 11 27 52 11 26 43 15 26 43 13 28 32 12 ERROR: Degenerate spline segment 27 53 11 27 52 11 26 43 13 26 43 13 28 32 12 ERROR: Degenerate spline segment 27 50 9 27 50 9 27 44 15 26 43 13 29 32 11 ERROR: Degenerate spline segment 27 50 9 27 50 9 30 41 14 26 40 13 28 32 13 ERROR: Degenerate spline segment 26 50 10 26 50 10 29 40 14 26 40 13 28 32 13 ERROR: Degenerate spline segment 27 50 9 27 50 9 29 40 14 26 40 13 28 32 13 ERROR: Degenerate spline segment 27 51 10 27 51 10 27 44 14 26 39 15 30 31 11 ERROR: Degenerate spline segment 27 51 10 27 51 10 27 44 14 25 39 15 28 33 11 ERROR: Degenerate spline segment 29 52 8 29 52 8 26 47 13 26 39 15 29 31 9 ERROR: Degenerate spline segment 28 51 8 28 51 8 28 45 13 25 38 14 29 31 9 ERROR: Degenerate spline segment 29 52 10 29 52 10 28 45 13 25 37 14 29 31 9 ERROR: Degenerate spline segment 29 52 8 29 52 8 26 44 14 26 36 15 30 31 9 ERROR: Degenerate spline segment 27 52 10 27 52 10 26 47 13 25 35 14 30 34 12 ERROR: Degenerate spline segment 27 50 10 27 50 10 25 46 12 27 37 13 29 33 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt Done in 3.401 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 11 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 37 30 4 37 28 5 36 27 6 36 27 6 36 23 9 ERROR: Degenerate spline segment 37 30 4 37 28 5 36 27 6 36 27 6 35 24 9 ERROR: Degenerate spline segment 37 30 4 36 27 4 36 27 4 35 25 7 35 24 9 ERROR: Degenerate spline segment 37 30 4 37 30 4 36 27 4 35 25 7 35 24 9 ERROR: Degenerate spline segment 37 30 4 37 28 5 36 27 4 35 24 8 35 24 8 ERROR: Degenerate spline segment 37 31 3 36 27 5 36 27 5 36 25 8 37 23 7 ERROR: Degenerate spline segment 37 31 3 36 27 5 36 27 5 36 25 8 37 23 7 ERROR: Degenerate spline segment 37 31 3 37 27 5 37 27 5 36 25 8 37 23 7 ERROR: Degenerate spline segment 37 31 3 37 27 5 37 27 5 36 25 8 37 23 7 ERROR: Degenerate spline segment 37 31 3 37 27 5 37 27 5 36 25 8 37 23 7 ERROR: Degenerate spline segment 37 31 3 36 28 6 36 28 6 36 24 9 36 23 7 Running MCMC main jumps ERROR: Degenerate spline segment 37 31 3 36 28 6 36 28 6 36 24 9 36 23 7 ERROR: Degenerate spline segment 37 31 3 36 28 6 36 26 5 36 23 7 36 23 7 ERROR: Degenerate spline segment 37 31 3 36 28 6 36 28 6 35 23 10 36 23 7 ERROR: Degenerate spline segment 37 31 3 36 26 5 36 26 5 35 23 10 36 23 7 ERROR: Degenerate spline segment 37 31 3 36 28 6 36 28 6 35 23 10 37 23 7 ERROR: Degenerate spline segment 37 31 3 36 26 5 36 26 5 35 23 10 36 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 23 10 36 23 8 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 5 35 23 10 35 23 10 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 23 10 36 23 8 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 35 23 10 36 23 8 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 36 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 5 36 23 9 36 23 9 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 36 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 36 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 35 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 35 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 35 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 35 23 9 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 24 8 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 24 8 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 6 35 24 8 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 24 8 37 23 7 ERROR: Degenerate spline segment 37 30 3 36 28 6 36 28 5 35 24 8 35 24 8 ERROR: Degenerate spline segment 37 30 3 37 28 5 37 28 4 35 24 8 35 24 8 ERROR: Degenerate spline segment 37 30 3 37 28 5 37 28 5 35 24 8 36 24 6 ERROR: Degenerate spline segment 37 30 3 37 28 5 37 28 4 35 24 8 35 24 8 ERROR: Degenerate spline segment 37 30 3 37 28 4 37 28 4 35 25 7 36 24 6 ERROR: Degenerate spline segment 37 30 3 37 28 4 37 28 4 35 26 6 36 24 6 ERROR: Degenerate spline segment 37 30 3 36 28 5 36 28 5 35 26 6 36 25 7 ERROR: Degenerate spline segment 37 29 3 37 29 3 37 28 4 35 25 8 35 24 8 ERROR: Degenerate spline segment 37 29 3 36 28 4 37 28 4 35 25 8 35 25 8 ERROR: Degenerate spline segment 37 29 3 37 28 4 37 28 4 35 25 8 35 24 8 ERROR: Degenerate spline segment 36 28 5 36 28 5 37 28 4 34 24 9 34 23 10 ERROR: Degenerate spline segment 37 30 3 36 28 5 37 28 4 33 24 9 33 24 9 ERROR: Degenerate spline segment 37 30 3 37 28 4 37 28 4 35 24 8 34 24 9 ERROR: Degenerate spline segment 37 30 3 36 28 4 36 28 4 35 24 8 34 24 9 ERROR: Degenerate spline segment 38 31 3 37 28 4 37 28 4 35 24 8 35 24 9 ERROR: Degenerate spline segment 38 31 3 36 28 4 37 28 4 35 24 9 35 24 9 ERROR: Degenerate spline segment 38 31 3 38 31 3 37 28 4 36 26 9 35 24 9 ERROR: Degenerate spline segment 38 31 3 36 28 5 37 28 4 35 24 9 35 24 9 ERROR: Degenerate spline segment 38 31 3 37 28 4 37 28 4 36 26 9 35 24 9 ERROR: Degenerate spline segment 38 31 3 36 28 5 37 28 4 35 24 9 35 24 9 ERROR: Degenerate spline segment 38 31 3 36 28 5 36 28 5 36 26 9 35 24 9 ERROR: Degenerate spline segment 38 31 3 35 30 5 37 31 7 35 24 8 35 24 8 ERROR: Degenerate spline segment 38 31 3 35 28 4 37 31 7 36 25 7 36 25 7 ERROR: Degenerate spline segment 38 31 3 37 29 4 37 31 7 36 25 9 36 25 9 ERROR: Degenerate spline segment 37 29 4 37 29 4 37 31 7 35 24 9 35 24 8 ERROR: Degenerate spline segment 37 33 3 38 30 4 37 32 8 35 24 9 35 24 9 ERROR: Degenerate spline segment 37 33 3 38 30 4 37 32 8 35 24 9 35 24 9 ERROR: Degenerate spline segment 37 33 3 38 30 4 37 32 8 35 24 8 35 24 8 ERROR: Degenerate spline segment 37 33 3 38 31 2 37 32 8 35 24 8 35 24 8 ERROR: Degenerate spline segment 37 33 3 38 31 2 36 32 8 35 24 8 35 24 8 ERROR: Degenerate spline segment 36 33 2 38 31 2 36 32 9 35 24 9 35 24 9 ERROR: Degenerate spline segment 37 32 3 38 31 2 35 33 11 36 24 8 36 24 8 ERROR: Degenerate spline segment 37 32 3 38 31 2 35 33 11 35 24 9 35 24 9 ERROR: Degenerate spline segment 37 33 3 38 30 3 32 33 11 35 25 7 35 25 7 ERROR: Degenerate spline segment 37 33 3 37 33 3 32 33 11 35 26 10 35 25 7 ERROR: Degenerate spline segment 37 33 3 37 33 3 32 33 11 37 24 7 34 24 9 ERROR: Degenerate spline segment 37 33 3 37 33 3 32 33 11 37 24 7 34 24 9 ERROR: Degenerate spline segment 38 33 1 38 32 4 32 33 11 34 25 7 34 25 7 ERROR: Degenerate spline segment 38 33 1 38 32 4 32 33 11 36 25 7 36 25 7 ERROR: Degenerate spline segment 38 33 1 38 33 1 32 33 11 36 25 7 35 25 9 ERROR: Degenerate spline segment 38 33 1 38 33 1 32 33 11 36 25 7 35 25 9 ERROR: Degenerate spline segment 38 32 2 38 32 2 32 33 11 36 25 7 35 25 9 ERROR: Degenerate spline segment 39 32 1 39 32 1 33 32 10 36 25 7 35 25 9 ERROR: Degenerate spline segment 39 32 1 39 32 1 33 32 10 36 25 7 35 25 9 ERROR: Degenerate spline segment 40 33 2 39 32 1 33 35 9 35 24 9 35 24 9 ERROR: Degenerate spline segment 40 33 2 40 33 2 33 35 9 36 24 8 35 24 9 ERROR: Degenerate spline segment 40 33 2 39 32 1 33 35 9 36 24 8 36 24 8 ERROR: Degenerate spline segment 40 33 2 40 33 2 33 35 9 36 24 8 35 24 9 ERROR: Degenerate spline segment 38 31 2 38 31 2 33 35 9 37 23 7 35 24 9 ERROR: Degenerate spline segment 38 35 1 35 31 8 35 25 10 35 25 10 35 18 16 ERROR: Degenerate spline segment 38 35 1 35 31 8 35 25 10 35 25 10 35 18 16 ERROR: Degenerate spline segment 40 36 3 39 31 5 34 24 10 34 24 10 35 18 16 ERROR: Degenerate spline segment 38 32 3 42 31 5 33 23 11 33 23 11 37 19 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt Done in 3.37 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 12 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 25 37 1 25 37 1 26 32 2 27 25 8 28 21 10 ERROR: Degenerate spline segment 25 36 2 25 36 2 26 32 2 27 25 8 28 21 10 Running MCMC main jumps ERROR: Degenerate spline segment 23 36 3 23 36 3 27 31 3 27 26 8 29 23 11 ERROR: Degenerate spline segment 23 36 3 23 36 3 27 31 3 27 26 8 29 23 11 ERROR: Degenerate spline segment 25 35 2 25 35 2 27 28 5 27 26 8 28 23 10 ERROR: Degenerate spline segment 24 36 2 24 36 2 27 28 5 26 27 7 28 23 10 ERROR: Degenerate spline segment 24 36 2 24 36 2 28 31 3 28 29 8 28 20 13 ERROR: Degenerate spline segment 26 35 2 22 36 2 28 30 6 28 30 6 28 18 14 ERROR: Degenerate spline segment 26 35 2 22 36 2 28 31 3 28 31 3 28 18 15 ERROR: Degenerate spline segment 26 35 2 22 36 2 28 30 5 28 30 5 28 18 15 ERROR: Degenerate spline segment 26 35 2 22 36 2 28 31 3 28 31 3 28 18 15 ERROR: Degenerate spline segment 26 35 2 22 36 2 28 30 5 28 30 5 28 18 15 ERROR: Degenerate spline segment 26 35 2 22 36 2 28 31 3 28 31 3 28 18 15 ERROR: Degenerate spline segment 26 37 2 21 35 1 28 32 5 28 32 5 28 18 15 ERROR: Degenerate spline segment 26 37 2 21 35 1 28 32 7 28 32 7 28 18 15 ERROR: Degenerate spline segment 26 37 2 21 35 1 28 32 7 28 32 7 28 18 15 ERROR: Degenerate spline segment 26 37 2 21 35 1 28 32 5 28 32 5 28 18 15 ERROR: Degenerate spline segment 26 35 3 21 36 0 26 33 7 26 33 7 28 18 15 ERROR: Degenerate spline segment 26 35 3 21 36 0 25 33 7 25 33 7 28 18 15 ERROR: Degenerate spline segment 23 34 5 24 30 6 24 30 6 28 24 9 26 21 14 ERROR: Degenerate spline segment 23 34 5 24 29 6 24 29 6 27 24 9 28 20 14 ERROR: Degenerate spline segment 22 35 3 24 29 6 24 29 6 27 24 10 28 20 14 ERROR: Degenerate spline segment 22 35 3 24 29 6 24 29 6 27 24 10 28 20 14 ERROR: Degenerate spline segment 22 35 3 24 29 6 24 29 6 27 24 10 28 20 14 ERROR: Degenerate spline segment 23 38 3 22 30 6 22 30 6 29 23 11 27 20 16 ERROR: Degenerate spline segment 23 39 3 22 29 6 22 29 6 28 22 11 27 19 16 ERROR: Degenerate spline segment 23 37 2 23 27 5 23 27 5 28 23 10 27 19 16 ERROR: Degenerate spline segment 23 36 1 23 26 3 23 26 3 28 24 10 27 19 16 ERROR: Degenerate spline segment 23 36 1 23 26 3 23 26 3 28 24 10 27 19 16 ERROR: Degenerate spline segment 23 36 2 23 27 5 23 27 5 28 23 10 27 20 16 ERROR: Degenerate spline segment 23 36 2 23 27 5 23 27 5 28 23 10 27 20 16 ERROR: Degenerate spline segment 23 36 2 23 26 3 23 26 3 28 23 10 27 20 16 ERROR: Degenerate spline segment 23 36 2 23 26 3 23 26 3 28 23 10 27 20 16 ERROR: Degenerate spline segment 22 34 4 24 28 6 24 28 6 29 22 11 26 21 14 ERROR: Degenerate spline segment 22 34 4 24 28 6 24 28 6 29 22 11 26 21 12 ERROR: Degenerate spline segment 23 34 5 20 27 5 25 31 7 26 21 10 26 21 10 ERROR: Degenerate spline segment 22 34 5 19 26 5 27 32 7 26 21 12 26 21 12 ERROR: Degenerate spline segment 24 34 5 21 28 6 28 32 7 26 21 12 26 21 12 ERROR: Degenerate spline segment 22 34 5 21 28 6 28 32 7 28 21 11 28 21 11 ERROR: Degenerate spline segment 22 34 5 21 28 8 27 32 7 28 21 11 28 21 11 ERROR: Degenerate spline segment 22 34 5 21 28 8 27 32 7 27 21 11 27 21 11 ERROR: Degenerate spline segment 22 34 5 22 28 7 27 32 7 28 21 11 28 21 11 ERROR: Degenerate spline segment 23 33 5 23 33 5 23 31 7 28 24 10 26 22 10 ERROR: Degenerate spline segment 22 34 5 22 34 5 26 28 8 29 24 10 25 20 11 ERROR: Degenerate spline segment 25 34 0 21 34 4 28 25 8 27 20 16 27 20 16 ERROR: Degenerate spline segment 23 31 3 24 30 6 27 23 13 27 23 13 28 19 17 ERROR: Degenerate spline segment 23 31 3 24 30 6 27 23 13 27 23 13 28 19 17 ERROR: Degenerate spline segment 23 33 2 24 30 6 29 21 10 28 21 14 28 21 14 ERROR: Degenerate spline segment 24 32 2 22 28 7 30 24 10 27 20 16 27 20 16 ERROR: Degenerate spline segment 22 33 3 22 33 3 29 23 11 26 22 12 28 22 13 ERROR: Degenerate spline segment 21 33 3 21 33 3 29 23 11 26 22 12 28 22 13 ERROR: Degenerate spline segment 22 33 3 22 33 3 29 22 11 26 22 12 27 21 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt Done in 3.64 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 13 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 34 42 15 33 32 17 33 32 17 35 22 16 34 19 17 ERROR: Degenerate spline segment 33 42 15 34 33 17 34 33 17 34 22 14 34 19 16 ERROR: Degenerate spline segment 33 42 15 33 34 17 34 33 18 34 20 15 34 20 15 ERROR: Degenerate spline segment 33 43 14 34 35 17 34 34 18 35 18 16 35 18 16 ERROR: Degenerate spline segment 35 45 14 35 38 18 35 33 19 35 18 16 35 18 16 Running MCMC main jumps ERROR: Degenerate spline segment 36 45 16 36 42 18 34 28 18 36 21 15 36 21 15 ERROR: Degenerate spline segment 36 45 16 36 43 17 34 29 18 35 22 15 35 22 15 ERROR: Degenerate spline segment 36 44 16 36 44 16 35 28 18 35 22 14 34 23 13 ERROR: Degenerate spline segment 34 44 16 35 42 16 34 28 18 34 22 13 34 22 13 ERROR: Degenerate spline segment 34 40 18 34 40 18 35 36 18 34 27 17 34 20 11 ERROR: Degenerate spline segment 36 41 20 35 37 19 35 37 19 34 26 17 35 21 13 ERROR: Degenerate spline segment 35 39 18 35 39 18 35 36 18 34 24 16 35 21 12 ERROR: Degenerate spline segment 35 42 16 34 39 16 34 33 18 34 33 18 34 22 15 ERROR: Degenerate spline segment 34 37 19 34 37 19 36 33 20 34 29 18 34 24 17 ERROR: Degenerate spline segment 35 36 19 35 36 19 36 33 20 34 29 18 34 24 17 ERROR: Degenerate spline segment 35 36 19 35 36 19 36 33 20 34 29 18 34 24 17 ERROR: Degenerate spline segment 36 40 19 36 40 19 34 31 18 33 31 18 34 26 17 ERROR: Degenerate spline segment 36 40 19 36 38 19 33 31 18 33 31 18 34 26 17 ERROR: Degenerate spline segment 34 41 16 36 42 17 34 31 19 34 24 16 34 24 16 ERROR: Degenerate spline segment 35 40 17 34 35 18 34 35 18 34 27 18 34 25 15 ERROR: Degenerate spline segment 35 39 19 33 38 16 35 36 18 34 24 15 34 24 15 ERROR: Degenerate spline segment 35 36 18 35 36 18 34 36 18 34 25 17 34 23 13 ERROR: Degenerate spline segment 35 38 18 35 36 19 35 36 19 34 28 17 34 22 11 ERROR: Degenerate spline segment 35 38 18 35 38 18 33 34 18 34 28 17 34 21 10 ERROR: Degenerate spline segment 35 38 19 35 38 19 34 33 17 34 26 16 34 21 10 ERROR: Degenerate spline segment 34 37 17 34 37 17 35 31 18 34 28 17 34 22 14 ERROR: Degenerate spline segment 33 40 16 34 38 17 34 29 18 34 29 18 35 24 16 ERROR: Degenerate spline segment 33 40 16 33 40 16 34 31 18 34 29 17 35 24 16 ERROR: Degenerate spline segment 33 39 16 33 39 16 34 31 18 34 29 17 34 23 16 ERROR: Degenerate spline segment 35 37 18 33 38 16 34 29 18 34 29 18 35 24 15 ERROR: Degenerate spline segment 35 42 18 34 32 18 35 31 19 35 31 19 35 23 15 ERROR: Degenerate spline segment 35 41 16 34 31 18 35 27 18 35 25 16 35 25 16 ERROR: Degenerate spline segment 34 39 17 34 31 18 35 25 16 35 25 16 35 24 17 ERROR: Degenerate spline segment 35 38 17 34 31 18 34 24 17 35 25 16 35 25 16 ERROR: Degenerate spline segment 35 35 18 34 31 18 34 24 17 34 24 17 36 25 18 ERROR: Degenerate spline segment 33 34 20 34 28 17 34 27 17 35 25 17 35 25 17 ERROR: Degenerate spline segment 33 34 20 33 30 16 34 27 17 35 25 17 35 25 17 ERROR: Degenerate spline segment 35 36 18 34 31 18 34 28 18 34 28 18 34 27 16 ERROR: Degenerate spline segment 35 36 18 34 31 18 34 29 18 34 29 18 34 27 16 ERROR: Degenerate spline segment 35 37 18 34 31 19 34 31 19 34 28 18 34 27 18 ERROR: Degenerate spline segment 35 38 17 33 31 19 33 31 19 34 27 17 34 26 17 ERROR: Degenerate spline segment 35 38 18 33 31 19 34 29 17 34 29 17 34 25 15 ERROR: Degenerate spline segment 35 38 18 35 33 17 34 29 17 34 29 17 35 22 16 ERROR: Degenerate spline segment 33 37 19 33 33 17 35 27 18 35 27 18 35 24 15 ERROR: Degenerate spline segment 35 37 19 33 32 19 35 29 18 35 29 18 35 24 15 ERROR: Degenerate spline segment 34 35 18 34 30 19 34 30 19 34 25 17 35 24 16 ERROR: Degenerate spline segment 34 35 18 34 30 19 34 30 19 32 26 15 35 24 16 ERROR: Degenerate spline segment 33 33 17 34 31 17 34 26 17 34 26 17 34 24 16 ERROR: Degenerate spline segment 33 34 17 33 34 17 34 27 17 37 24 18 34 24 16 ERROR: Degenerate spline segment 34 34 18 34 34 18 34 26 17 37 24 18 35 25 16 ERROR: Degenerate spline segment 33 34 17 34 34 18 36 24 17 36 24 17 35 25 16 ERROR: Degenerate spline segment 33 34 17 33 34 17 34 26 17 34 25 17 35 25 16 ERROR: Degenerate spline segment 33 36 19 34 34 19 34 25 17 34 25 17 35 25 17 ERROR: Degenerate spline segment 34 34 19 34 34 19 34 26 16 35 26 17 35 25 17 ERROR: Degenerate spline segment 34 36 19 34 36 19 33 25 14 35 25 18 33 26 16 ERROR: Degenerate spline segment 33 33 17 35 34 20 33 25 14 34 26 16 34 26 16 ERROR: Degenerate spline segment 34 34 18 34 34 18 33 25 14 34 26 15 33 25 17 ERROR: Degenerate spline segment 34 34 18 34 34 18 33 25 14 34 29 17 33 25 17 ERROR: Degenerate spline segment 33 34 18 33 34 18 33 24 13 34 29 17 33 25 16 ERROR: Degenerate spline segment 33 33 18 33 33 18 33 24 13 34 29 17 33 28 19 ERROR: Degenerate spline segment 33 33 19 33 33 19 33 24 13 34 29 17 34 27 18 ERROR: Degenerate spline segment 35 38 17 31 29 17 31 29 17 37 29 19 34 24 16 ERROR: Degenerate spline segment 34 36 20 34 31 18 34 31 18 36 34 17 36 20 17 ERROR: Degenerate spline segment 35 38 18 34 28 17 35 32 19 35 23 15 35 23 15 ERROR: Degenerate spline segment 36 41 20 33 34 19 33 34 19 34 23 15 34 25 17 ERROR: Degenerate spline segment 36 41 20 35 34 18 34 32 19 34 23 15 34 23 15 ERROR: Degenerate spline segment 36 41 20 35 34 19 34 32 19 33 23 15 33 23 15 ERROR: Degenerate spline segment 34 39 17 36 37 19 34 35 19 35 21 12 35 21 12 ERROR: Degenerate spline segment 34 39 18 34 35 19 34 35 19 34 24 16 34 20 11 ERROR: Degenerate spline segment 36 40 19 36 40 19 35 35 18 34 24 16 34 23 10 ERROR: Degenerate spline segment 36 39 19 36 39 19 34 36 18 34 25 17 34 22 10 ERROR: Degenerate spline segment 34 35 19 34 35 19 34 33 19 34 22 14 35 21 12 ERROR: Degenerate spline segment 35 37 18 37 37 20 34 33 19 36 21 15 36 21 15 ERROR: Degenerate spline segment 33 40 17 35 36 17 34 33 19 34 23 15 34 23 15 ERROR: Degenerate spline segment 34 40 16 33 37 16 36 35 19 34 22 14 34 22 14 ERROR: Degenerate spline segment 33 36 16 33 36 16 34 36 18 36 24 17 34 22 14 ERROR: Degenerate spline segment 34 38 17 34 38 17 34 36 18 36 24 17 34 22 14 ERROR: Degenerate spline segment 33 38 16 33 38 16 35 36 17 38 23 19 36 23 16 ERROR: Degenerate spline segment 33 34 18 35 39 17 36 34 20 35 22 19 35 22 19 ERROR: Degenerate spline segment 34 36 19 35 36 19 36 32 18 36 22 18 36 22 18 ERROR: Degenerate spline segment 35 34 19 34 38 17 34 31 18 35 23 16 35 23 16 ERROR: Degenerate spline segment 34 35 18 36 35 18 34 30 18 34 24 15 34 24 15 ERROR: Degenerate spline segment 34 34 19 33 36 19 34 30 18 34 24 16 34 24 16 ERROR: Degenerate spline segment 34 34 19 33 36 17 34 30 18 34 24 16 34 24 16 ERROR: Degenerate spline segment 34 34 19 34 35 18 34 30 18 34 24 15 34 24 15 ERROR: Degenerate spline segment 34 36 18 34 36 18 34 31 18 34 25 15 33 25 17 ERROR: Degenerate spline segment 34 36 18 33 37 17 34 31 18 34 25 15 34 25 15 ERROR: Degenerate spline segment 35 36 18 35 36 18 33 31 18 34 26 14 33 27 16 ERROR: Degenerate spline segment 35 39 18 35 38 18 34 33 19 34 25 16 34 25 16 ERROR: Degenerate spline segment 35 38 18 35 38 18 34 33 19 34 26 17 35 24 16 ERROR: Degenerate spline segment 33 41 15 33 35 17 33 35 17 35 29 19 35 20 12 ERROR: Degenerate spline segment 33 41 15 33 35 17 33 35 17 35 29 19 35 20 12 ERROR: Degenerate spline segment 33 42 16 33 34 17 33 34 17 36 30 19 35 21 13 ERROR: Degenerate spline segment 33 42 16 33 34 17 33 34 17 36 30 19 33 21 14 ERROR: Degenerate spline segment 35 42 16 33 34 17 33 34 17 33 30 18 35 23 15 ERROR: Degenerate spline segment 35 42 16 33 35 17 34 31 17 34 31 17 36 22 15 ERROR: Degenerate spline segment 35 42 16 34 34 18 34 31 17 34 31 17 36 22 15 ERROR: Degenerate spline segment 35 42 16 34 34 18 34 31 18 34 31 18 35 23 15 ERROR: Degenerate spline segment 35 41 18 34 35 19 34 31 17 34 31 17 35 23 15 ERROR: Degenerate spline segment 35 41 19 37 37 19 34 32 18 34 32 18 34 22 15 ERROR: Degenerate spline segment 34 36 19 34 37 17 34 33 17 34 33 17 34 25 17 ERROR: Degenerate spline segment 34 36 18 34 37 17 34 33 17 34 33 17 34 25 17 ERROR: Degenerate spline segment 33 36 19 34 36 19 34 32 18 34 32 18 34 26 17 ERROR: Degenerate spline segment 33 36 19 34 36 19 34 33 18 34 33 18 34 26 17 ERROR: Degenerate spline segment 35 43 17 36 41 18 34 33 18 34 33 18 35 24 17 ERROR: Degenerate spline segment 35 43 17 36 41 18 34 33 19 34 33 19 35 24 17 ERROR: Degenerate spline segment 35 43 17 36 41 18 34 33 18 34 33 18 35 24 16 ERROR: Degenerate spline segment 35 40 17 36 42 16 36 31 20 36 31 20 34 23 14 ERROR: Degenerate spline segment 33 40 16 36 42 16 35 32 20 35 32 20 34 22 14 ERROR: Degenerate spline segment 35 44 14 37 40 20 37 40 20 35 32 19 34 23 13 ERROR: Degenerate spline segment 33 42 15 36 42 16 34 34 19 34 34 19 33 21 13 ERROR: Degenerate spline segment 33 42 16 35 43 15 34 34 19 34 34 19 33 19 14 ERROR: Degenerate spline segment 33 42 16 35 43 15 34 33 19 34 33 19 33 19 14 ERROR: Degenerate spline segment 33 42 16 35 43 15 34 33 19 34 33 19 33 19 14 ERROR: Degenerate spline segment 33 42 16 35 43 15 34 34 19 34 34 19 33 19 14 ERROR: Degenerate spline segment 33 42 16 35 43 15 34 33 19 34 33 19 33 19 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt Done in 6.351 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 14 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 30 38 18 30 38 18 30 31 17 29 24 16 29 24 15 ERROR: Degenerate spline segment 30 38 17 30 38 17 30 31 17 29 24 16 29 24 15 ERROR: Degenerate spline segment 30 38 18 30 38 17 30 31 17 29 24 16 29 24 16 ERROR: Degenerate spline segment 30 38 18 30 38 18 29 31 18 28 24 14 29 24 15 ERROR: Degenerate spline segment 30 41 16 29 40 17 28 36 18 28 25 18 28 25 18 ERROR: Degenerate spline segment 30 41 16 29 40 17 28 37 18 27 26 18 27 26 18 Running MCMC main jumps ERROR: Degenerate spline segment 29 42 15 28 36 19 30 29 18 30 29 18 27 23 18 ERROR: Degenerate spline segment 28 45 14 28 37 19 30 29 18 30 29 18 27 23 19 ERROR: Degenerate spline segment 28 45 14 27 36 19 30 29 18 30 29 18 27 25 18 ERROR: Degenerate spline segment 28 45 14 27 36 19 29 29 19 29 29 19 27 25 18 ERROR: Degenerate spline segment 28 45 14 27 36 19 29 29 19 29 29 19 27 25 18 ERROR: Degenerate spline segment 29 43 14 28 35 20 28 31 18 28 31 18 27 22 17 ERROR: Degenerate spline segment 27 45 15 30 35 18 30 35 18 28 28 18 30 24 14 ERROR: Degenerate spline segment 28 44 15 29 38 17 29 31 18 30 25 15 30 25 15 ERROR: Degenerate spline segment 28 44 15 28 36 19 29 27 16 29 27 16 29 25 16 ERROR: Degenerate spline segment 28 44 15 28 36 19 29 27 16 30 26 16 30 26 16 ERROR: Degenerate spline segment 28 43 16 28 34 19 28 19 18 28 23 16 28 23 16 ERROR: Degenerate spline segment 28 45 16 29 32 18 27 19 17 27 22 17 27 22 17 ERROR: Degenerate spline segment 28 44 16 29 32 17 29 25 16 27 23 18 27 23 18 ERROR: Degenerate spline segment 28 44 16 29 33 18 29 26 17 28 22 18 28 22 18 ERROR: Degenerate spline segment 28 45 17 29 32 18 29 29 18 28 23 18 28 23 18 ERROR: Degenerate spline segment 28 43 15 29 32 18 27 23 17 27 23 17 28 22 15 ERROR: Degenerate spline segment 27 46 16 28 33 18 27 23 18 27 23 18 28 19 14 ERROR: Degenerate spline segment 27 46 16 28 33 18 27 22 16 27 22 16 28 19 14 ERROR: Degenerate spline segment 28 45 16 29 32 18 27 21 16 27 21 16 28 19 14 ERROR: Degenerate spline segment 28 45 15 28 31 18 28 21 14 28 21 14 30 20 15 ERROR: Degenerate spline segment 28 45 17 28 28 18 27 20 14 27 20 14 29 20 13 ERROR: Degenerate spline segment 27 46 16 29 28 18 26 21 14 28 21 14 28 21 14 ERROR: Degenerate spline segment 27 45 15 29 28 18 25 21 14 28 21 14 28 21 14 ERROR: Degenerate spline segment 28 45 15 29 28 18 25 21 15 25 21 15 28 21 14 ERROR: Degenerate spline segment 29 42 15 29 33 18 29 27 17 28 21 14 28 21 14 ERROR: Degenerate spline segment 29 42 15 29 33 18 29 27 17 28 21 14 28 21 14 ERROR: Degenerate spline segment 29 42 15 29 33 18 29 27 17 28 21 14 28 21 14 ERROR: Degenerate spline segment 28 39 18 28 39 18 28 39 17 29 31 18 29 20 12 ERROR: Degenerate spline segment 29 39 17 29 39 17 29 38 17 29 31 18 29 20 12 ERROR: Degenerate spline segment 30 38 16 29 39 17 29 39 17 29 30 18 29 20 12 ERROR: Degenerate spline segment 28 38 18 28 38 18 29 35 18 30 31 19 28 21 14 ERROR: Degenerate spline segment 28 41 17 28 41 17 29 35 17 28 37 19 29 26 17 ERROR: Degenerate spline segment 28 43 17 28 43 17 29 36 18 26 36 19 29 26 17 ERROR: Degenerate spline segment 28 46 13 29 41 16 29 41 16 28 35 19 27 21 14 ERROR: Degenerate spline segment 28 46 13 29 41 16 29 41 16 28 32 19 29 21 13 ERROR: Degenerate spline segment 28 46 13 29 41 15 29 41 15 28 32 19 29 21 13 ERROR: Degenerate spline segment 29 45 13 29 41 15 29 41 15 28 33 19 29 21 13 ERROR: Degenerate spline segment 28 38 19 28 38 19 28 34 19 29 26 17 28 24 17 ERROR: Degenerate spline segment 28 38 19 28 38 19 29 34 18 29 26 17 28 24 17 ERROR: Degenerate spline segment 30 36 20 26 36 18 29 34 18 28 23 16 28 23 16 ERROR: Degenerate spline segment 30 36 17 30 36 17 29 34 18 29 23 15 28 25 17 ERROR: Degenerate spline segment 30 36 17 30 36 17 29 34 18 29 23 15 28 25 17 ERROR: Degenerate spline segment 28 36 20 27 37 20 28 33 19 29 24 16 29 24 16 ERROR: Degenerate spline segment 28 36 20 28 36 20 28 33 19 29 25 16 29 24 16 ERROR: Degenerate spline segment 28 36 20 27 37 21 26 35 19 29 25 16 29 25 16 ERROR: Degenerate spline segment 29 39 17 29 35 18 29 34 18 29 34 18 28 24 18 ERROR: Degenerate spline segment 30 37 19 29 34 18 29 34 18 29 32 18 28 24 18 ERROR: Degenerate spline segment 31 36 18 31 36 18 29 35 18 28 32 18 28 24 18 ERROR: Degenerate spline segment 28 38 20 29 36 18 29 36 18 29 33 18 28 25 18 ERROR: Degenerate spline segment 28 38 20 29 35 17 29 35 17 29 33 18 29 26 17 ERROR: Degenerate spline segment 28 38 20 29 35 17 29 35 17 29 33 18 29 26 17 ERROR: Degenerate spline segment 28 38 20 29 36 17 29 35 17 29 35 17 27 25 18 ERROR: Degenerate spline segment 28 38 20 29 37 17 29 34 18 29 34 18 28 24 18 ERROR: Degenerate spline segment 28 38 19 28 38 19 29 34 18 29 31 18 29 24 16 ERROR: Degenerate spline segment 31 39 18 30 38 17 30 34 19 29 26 17 29 26 17 ERROR: Degenerate spline segment 29 36 19 29 36 19 29 35 18 27 30 18 28 26 18 ERROR: Degenerate spline segment 29 37 18 29 37 18 27 39 18 28 31 19 28 21 17 ERROR: Degenerate spline segment 29 38 17 29 38 17 28 38 17 29 32 18 28 24 16 ERROR: Degenerate spline segment 29 37 17 29 38 17 29 38 17 29 32 18 28 24 16 ERROR: Degenerate spline segment 30 37 17 30 37 17 28 38 17 29 32 18 29 24 16 ERROR: Degenerate spline segment 29 37 18 29 37 18 28 38 17 28 34 18 28 25 18 ERROR: Degenerate spline segment 30 36 20 29 36 18 29 36 18 30 33 18 28 24 18 ERROR: Degenerate spline segment 30 36 20 27 34 20 27 34 20 29 33 18 28 24 18 ERROR: Degenerate spline segment 28 34 19 27 37 21 28 30 18 28 30 18 30 25 16 ERROR: Degenerate spline segment 28 36 20 28 36 20 29 36 18 29 28 18 28 25 17 ERROR: Degenerate spline segment 28 36 20 27 36 19 27 36 19 28 30 19 29 25 16 ERROR: Degenerate spline segment 28 43 16 28 34 19 28 34 19 30 29 18 28 25 17 ERROR: Degenerate spline segment 28 41 16 29 35 18 29 35 18 30 29 18 29 25 16 ERROR: Degenerate spline segment 29 34 19 29 34 17 29 34 17 29 30 18 29 25 16 ERROR: Degenerate spline segment 29 36 18 29 36 18 28 35 18 29 30 18 29 24 15 ERROR: Degenerate spline segment 29 37 18 29 36 18 29 36 18 29 30 18 29 24 15 ERROR: Degenerate spline segment 30 40 17 30 40 17 30 35 19 28 28 16 29 23 14 ERROR: Degenerate spline segment 29 45 13 28 39 17 28 39 17 29 27 18 29 21 11 ERROR: Degenerate spline segment 28 44 15 30 39 16 30 39 16 29 27 18 30 20 12 ERROR: Degenerate spline segment 30 45 14 27 39 19 27 39 19 25 30 16 28 21 14 ERROR: Degenerate spline segment 28 44 16 28 36 18 28 36 18 28 26 18 29 23 13 ERROR: Degenerate spline segment 29 44 17 29 44 17 29 38 17 28 32 19 29 24 16 ERROR: Degenerate spline segment 28 44 15 28 44 15 29 36 18 29 31 18 29 25 15 ERROR: Degenerate spline segment 28 41 17 28 41 17 29 34 18 30 30 19 29 25 15 ERROR: Degenerate spline segment 29 38 19 28 38 18 26 36 19 26 36 19 30 25 16 ERROR: Degenerate spline segment 28 38 18 28 38 18 27 36 18 26 36 19 30 25 16 ERROR: Degenerate spline segment 29 38 19 28 38 18 28 38 18 26 36 19 30 25 16 ERROR: Degenerate spline segment 29 38 19 28 38 18 26 36 19 26 36 19 30 25 16 ERROR: Degenerate spline segment 29 40 17 28 38 18 27 36 18 27 36 18 30 25 16 ERROR: Degenerate spline segment 31 43 16 28 37 17 28 37 17 26 28 18 29 24 15 ERROR: Degenerate spline segment 29 39 17 29 39 17 29 37 18 29 27 17 30 23 14 ERROR: Degenerate spline segment 29 39 16 29 37 18 29 37 18 29 27 17 28 22 15 ERROR: Degenerate spline segment 29 40 17 29 40 17 28 37 19 29 28 17 28 25 18 ERROR: Degenerate spline segment 29 39 16 29 39 16 28 35 19 26 28 16 30 26 16 ERROR: Degenerate spline segment 28 40 18 29 42 14 27 33 22 27 33 22 30 23 11 ERROR: Degenerate spline segment 28 40 17 28 39 16 27 34 22 27 34 22 29 23 13 ERROR: Degenerate spline segment 28 40 17 29 40 16 27 33 22 27 33 22 29 23 13 ERROR: Degenerate spline segment 29 41 16 29 41 16 28 35 19 28 35 21 29 23 13 ERROR: Degenerate spline segment 28 38 20 28 40 17 28 40 17 28 33 19 29 23 13 ERROR: Degenerate spline segment 28 38 20 27 40 16 27 40 16 27 33 19 29 22 14 ERROR: Degenerate spline segment 28 38 20 27 40 17 27 40 17 30 32 19 30 22 12 ERROR: Degenerate spline segment 28 38 20 27 40 17 27 40 17 30 32 19 30 22 12 ERROR: Degenerate spline segment 28 36 20 28 36 20 25 37 16 29 30 18 29 23 12 ERROR: Degenerate spline segment 28 35 19 28 34 19 28 34 19 28 33 18 29 24 19 ERROR: Degenerate spline segment 29 34 19 29 35 18 27 37 18 27 37 18 28 21 18 ERROR: Degenerate spline segment 31 33 18 28 37 18 28 37 19 28 37 19 28 21 18 ERROR: Degenerate spline segment 30 33 17 27 38 18 27 38 18 27 37 21 28 24 18 ERROR: Degenerate spline segment 30 34 17 28 37 17 28 37 17 27 38 19 28 24 18 ERROR: Degenerate spline segment 29 33 19 27 37 20 30 38 17 30 38 17 28 21 18 ERROR: Degenerate spline segment 28 34 19 27 38 20 27 40 20 27 40 20 28 23 18 ERROR: Degenerate spline segment 28 34 19 27 40 20 27 40 20 28 39 19 28 24 17 ERROR: Degenerate spline segment 28 34 19 27 37 21 27 37 21 28 39 18 30 25 16 ERROR: Degenerate spline segment 29 34 19 27 37 18 27 37 18 27 41 20 30 25 16 ERROR: Degenerate spline segment 29 34 19 29 34 19 28 39 17 27 41 20 31 25 16 ERROR: Degenerate spline segment 29 37 17 26 37 19 26 37 19 27 38 19 27 23 19 ERROR: Degenerate spline segment 29 37 17 26 37 19 26 37 19 27 38 19 27 23 19 ERROR: Degenerate spline segment 29 37 18 27 37 18 27 38 19 27 38 19 28 22 19 ERROR: Degenerate spline segment 28 35 19 27 38 18 27 37 19 27 37 19 29 22 19 ERROR: Degenerate spline segment 31 35 19 28 37 19 28 37 19 27 36 18 28 25 17 ERROR: Degenerate spline segment 30 34 19 30 34 19 27 45 13 28 32 19 30 24 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt Done in 6.769 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 15 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 44 34 14 42 31 16 42 31 16 42 26 16 44 22 15 ERROR: Degenerate spline segment 44 34 14 42 32 15 42 32 15 42 26 16 44 22 15 ERROR: Degenerate spline segment 44 34 14 42 31 16 42 31 16 42 26 16 44 22 15 ERROR: Degenerate spline segment 44 34 14 42 32 15 42 32 15 41 27 16 44 22 15 ERROR: Degenerate spline segment 44 34 14 42 31 16 42 31 16 41 27 16 43 23 14 ERROR: Degenerate spline segment 44 34 14 42 32 15 42 32 15 41 27 16 43 23 14 ERROR: Degenerate spline segment 44 34 14 42 31 16 42 31 16 41 27 16 43 23 14 ERROR: Degenerate spline segment 44 35 15 44 35 15 41 30 16 41 27 16 42 25 15 ERROR: Degenerate spline segment 44 34 15 44 34 15 39 27 17 40 25 16 42 25 14 ERROR: Degenerate spline segment 44 34 14 44 34 14 39 27 17 39 25 15 43 23 16 Running MCMC main jumps ERROR: Degenerate spline segment 45 34 17 43 34 14 39 28 16 39 28 16 41 24 16 ERROR: Degenerate spline segment 45 35 15 45 35 15 39 30 19 39 29 16 41 26 15 ERROR: Degenerate spline segment 44 35 15 44 35 15 39 30 19 39 28 18 40 25 15 ERROR: Degenerate spline segment 44 33 15 44 33 15 40 30 16 41 29 16 40 23 16 ERROR: Degenerate spline segment 44 33 15 44 33 16 41 29 16 41 29 16 40 23 16 ERROR: Degenerate spline segment 43 34 15 43 34 15 40 25 15 40 21 13 40 23 17 ERROR: Degenerate spline segment 45 35 14 39 30 16 42 21 17 42 21 17 44 20 17 ERROR: Degenerate spline segment 43 37 13 41 26 16 40 21 16 40 21 16 43 23 13 ERROR: Degenerate spline segment 43 37 14 40 24 16 39 23 13 39 23 13 41 24 13 ERROR: Degenerate spline segment 44 34 15 40 25 15 37 22 14 41 23 13 41 23 13 ERROR: Degenerate spline segment 44 35 15 40 26 16 38 23 15 40 22 15 40 22 15 ERROR: Degenerate spline segment 45 35 14 42 29 15 40 21 16 40 21 16 41 20 13 ERROR: Degenerate spline segment 45 35 14 42 29 15 40 21 16 41 21 14 41 21 14 ERROR: Degenerate spline segment 44 35 15 40 27 15 40 23 16 40 22 13 40 22 13 ERROR: Degenerate spline segment 45 36 14 43 30 14 40 20 16 40 22 13 40 22 13 ERROR: Degenerate spline segment 43 35 14 43 35 14 37 27 21 39 24 16 42 20 15 ERROR: Degenerate spline segment 43 32 19 42 33 16 41 29 16 41 29 16 42 20 16 ERROR: Degenerate spline segment 44 32 18 39 31 18 40 26 15 40 26 15 44 20 18 ERROR: Degenerate spline segment 44 33 17 37 30 18 37 30 18 39 26 14 43 21 19 ERROR: Degenerate spline segment 44 33 17 37 30 18 37 30 18 40 25 15 43 21 18 ERROR: Degenerate spline segment 43 32 19 38 32 19 38 32 19 41 24 15 43 22 19 ERROR: Degenerate spline segment 43 32 19 39 33 19 39 33 19 41 24 15 43 22 19 ERROR: Degenerate spline segment 44 34 16 42 32 15 40 32 18 40 24 15 40 24 15 ERROR: Degenerate spline segment 44 34 16 42 32 15 40 32 18 40 24 15 40 24 15 ERROR: Degenerate spline segment 44 32 20 39 28 19 39 28 19 39 25 14 41 22 16 ERROR: Degenerate spline segment 44 33 20 38 30 19 38 30 19 39 25 15 41 23 13 ERROR: Degenerate spline segment 44 33 20 39 30 18 39 30 18 40 25 15 41 22 14 ERROR: Degenerate spline segment 45 35 14 41 31 15 41 30 16 42 22 14 42 22 14 ERROR: Degenerate spline segment 46 35 18 46 35 18 40 29 15 42 24 15 41 24 16 ERROR: Degenerate spline segment 44 35 15 44 35 15 41 30 16 39 24 17 43 22 17 ERROR: Degenerate spline segment 45 35 14 45 35 14 41 28 16 40 23 15 43 21 19 ERROR: Degenerate spline segment 43 36 14 40 29 17 41 22 16 41 22 16 43 22 19 ERROR: Degenerate spline segment 43 37 11 36 31 21 39 26 14 43 22 17 43 22 17 ERROR: Degenerate spline segment 44 35 15 42 31 15 41 18 14 41 18 14 41 24 14 ERROR: Degenerate spline segment 45 36 14 42 31 15 40 21 15 40 21 15 40 20 13 ERROR: Degenerate spline segment 45 35 13 42 32 15 41 23 16 41 23 16 41 20 13 ERROR: Degenerate spline segment 42 35 14 43 32 15 39 22 16 39 22 16 41 24 13 ERROR: Degenerate spline segment 45 35 13 42 33 15 40 25 16 41 22 14 41 22 14 ERROR: Degenerate spline segment 45 33 17 41 31 17 38 24 15 40 25 15 40 25 15 ERROR: Degenerate spline segment 43 34 17 42 32 16 42 32 16 41 24 14 40 24 12 ERROR: Degenerate spline segment 45 32 18 43 31 17 41 32 16 40 24 12 40 24 12 ERROR: Degenerate spline segment 43 34 15 44 32 18 41 33 15 42 26 16 42 26 16 ERROR: Degenerate spline segment 44 35 14 44 35 14 43 33 15 38 26 18 42 22 13 ERROR: Degenerate spline segment 43 35 13 43 35 13 45 32 17 39 30 16 41 21 16 ERROR: Degenerate spline segment 44 35 13 44 35 13 45 33 16 39 30 16 41 20 13 ERROR: Degenerate spline segment 44 33 16 43 34 14 43 34 14 40 31 15 41 21 15 ERROR: Degenerate spline segment 44 34 17 42 32 16 42 32 16 40 30 15 40 23 16 ERROR: Degenerate spline segment 45 35 16 45 35 16 43 33 17 39 30 16 40 22 15 ERROR: Degenerate spline segment 44 34 14 44 34 14 41 33 16 41 30 16 41 24 16 ERROR: Degenerate spline segment 44 34 13 44 34 13 41 33 17 39 34 17 41 24 16 ERROR: Degenerate spline segment 44 34 15 44 34 15 42 31 19 39 32 17 41 24 16 ERROR: Degenerate spline segment 45 33 20 40 30 15 40 30 15 41 25 16 41 21 14 ERROR: Degenerate spline segment 45 33 21 41 31 15 41 31 15 41 25 15 41 22 14 ERROR: Degenerate spline segment 45 33 21 41 31 16 41 31 16 40 25 16 41 22 14 ERROR: Degenerate spline segment 45 33 21 41 31 16 41 31 16 40 25 15 42 23 13 ERROR: Degenerate spline segment 44 32 19 39 29 18 40 29 16 40 22 15 40 22 15 ERROR: Degenerate spline segment 44 32 19 39 30 18 41 30 16 41 24 16 41 24 16 ERROR: Degenerate spline segment 42 34 16 42 34 16 40 30 19 36 34 21 41 20 14 ERROR: Degenerate spline segment 44 35 16 44 35 16 40 30 19 36 34 21 41 21 15 ERROR: Degenerate spline segment 44 35 16 44 35 16 41 28 17 36 32 19 41 21 15 ERROR: Degenerate spline segment 43 33 18 43 33 18 38 27 16 37 30 20 42 21 14 ERROR: Degenerate spline segment 42 34 17 37 37 21 38 27 16 38 27 16 42 20 15 ERROR: Degenerate spline segment 40 35 19 40 35 19 39 27 18 40 27 15 43 20 16 ERROR: Degenerate spline segment 40 35 15 40 30 18 38 30 16 41 20 17 41 20 17 ERROR: Degenerate spline segment 45 35 18 40 30 15 40 31 16 41 21 15 41 21 15 ERROR: Degenerate spline segment 44 33 19 40 30 15 40 30 15 42 20 15 41 21 15 ERROR: Degenerate spline segment 44 32 18 40 31 15 39 31 17 41 20 13 41 20 13 ERROR: Degenerate spline segment 43 33 19 37 29 18 39 31 17 40 19 14 40 19 14 ERROR: Degenerate spline segment 44 33 20 39 28 18 39 28 18 40 22 15 41 19 13 ERROR: Degenerate spline segment 44 33 20 40 33 21 40 29 15 42 21 15 42 21 15 ERROR: Degenerate spline segment 45 35 15 39 31 18 40 28 17 40 28 17 40 22 15 ERROR: Degenerate spline segment 45 35 15 39 31 18 39 29 17 39 29 17 41 24 16 ERROR: Degenerate spline segment 42 34 16 43 33 16 43 33 16 40 30 17 41 24 15 ERROR: Degenerate spline segment 44 35 13 43 34 16 43 34 16 39 31 16 42 26 16 ERROR: Degenerate spline segment 44 35 13 43 34 16 43 34 16 40 31 16 42 26 16 ERROR: Degenerate spline segment 45 35 14 45 35 14 43 33 17 40 31 16 42 26 16 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt Done in 5.978 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 16 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 19 36 15 23 28 16 23 28 16 25 23 16 21 21 14 ERROR: Degenerate spline segment 21 33 22 21 33 22 24 33 17 23 18 14 21 21 17 ERROR: Degenerate spline segment 20 33 19 20 33 19 24 34 16 22 23 15 21 25 15 ERROR: Degenerate spline segment 19 35 14 20 32 13 22 30 15 22 23 16 22 23 16 ERROR: Degenerate spline segment 19 36 14 20 32 13 22 30 15 22 23 13 22 23 13 ERROR: Degenerate spline segment 19 36 14 19 36 14 23 36 15 23 23 15 23 21 13 ERROR: Degenerate spline segment 19 35 15 19 35 15 24 30 17 23 22 15 25 22 17 ERROR: Degenerate spline segment 22 34 18 20 32 15 20 32 15 23 26 15 22 20 12 ERROR: Degenerate spline segment 22 34 18 20 32 15 20 32 15 23 26 15 22 20 12 ERROR: Degenerate spline segment 22 34 18 19 32 15 19 32 15 23 26 16 22 20 12 ERROR: Degenerate spline segment 23 34 15 19 32 14 19 32 14 23 25 15 22 20 12 ERROR: Degenerate spline segment 23 34 15 23 34 15 19 32 14 23 24 15 22 20 12 ERROR: Degenerate spline segment 23 34 15 23 34 15 19 35 13 23 24 15 22 20 12 ERROR: Degenerate spline segment 23 34 15 23 34 15 19 35 13 23 24 15 23 20 14 ERROR: Degenerate spline segment 20 33 18 21 34 16 20 36 14 22 24 16 22 24 16 ERROR: Degenerate spline segment 20 34 15 20 34 15 21 31 15 22 26 16 22 22 14 ERROR: Degenerate spline segment 19 33 17 21 33 16 21 33 16 25 28 16 18 24 16 ERROR: Degenerate spline segment 19 33 17 19 33 17 20 35 17 25 28 16 20 23 15 ERROR: Degenerate spline segment 20 33 16 21 34 15 21 34 15 26 29 17 19 23 15 ERROR: Degenerate spline segment 21 34 19 24 31 17 24 31 17 22 23 15 23 21 15 ERROR: Degenerate spline segment 23 34 19 24 32 19 25 26 13 25 26 13 22 22 15 ERROR: Degenerate spline segment 23 34 19 23 34 19 24 33 19 25 21 15 20 23 16 ERROR: Degenerate spline segment 21 33 20 24 35 20 24 35 20 23 22 14 21 22 16 ERROR: Degenerate spline segment 23 34 19 23 34 19 25 38 17 22 21 15 22 19 19 ERROR: Degenerate spline segment 23 34 19 23 34 19 26 38 17 22 21 15 22 20 17 ERROR: Degenerate spline segment 21 34 20 29 20 21 21 35 14 21 21 15 21 21 15 ERROR: Degenerate spline segment 22 33 20 29 20 20 21 36 13 21 21 15 21 21 15 ERROR: Degenerate spline segment 21 35 21 27 23 17 21 34 15 20 18 15 20 18 15 ERROR: Degenerate spline segment 21 35 21 27 23 17 21 35 15 20 18 15 20 18 15 ERROR: Degenerate spline segment 21 35 21 27 23 17 21 35 15 20 18 15 20 18 15 ERROR: Degenerate spline segment 22 35 19 27 25 19 20 36 13 21 20 16 21 20 16 ERROR: Degenerate spline segment 22 35 19 27 25 19 20 36 13 21 19 15 21 19 15 ERROR: Degenerate spline segment 22 35 19 26 26 18 23 37 14 22 19 16 22 19 16 ERROR: Degenerate spline segment 22 35 19 27 27 18 23 37 14 21 19 15 21 19 15 ERROR: Degenerate spline segment 22 35 19 28 27 18 22 39 14 22 19 16 22 19 16 ERROR: Degenerate spline segment 23 34 19 28 26 19 24 40 13 23 19 19 23 19 19 ERROR: Degenerate spline segment 23 34 19 28 26 19 24 40 13 23 19 19 23 19 19 ERROR: Degenerate spline segment 23 35 14 27 28 23 27 28 23 24 27 15 21 19 15 ERROR: Degenerate spline segment 24 36 14 26 28 21 26 28 21 25 27 17 21 17 15 ERROR: Degenerate spline segment 20 35 16 25 28 20 22 30 15 22 30 15 22 21 15 ERROR: Degenerate spline segment 22 33 18 25 30 18 25 30 18 23 30 16 23 21 15 ERROR: Degenerate spline segment 21 35 19 24 31 19 24 31 19 27 34 15 21 23 17 ERROR: Degenerate spline segment 22 34 18 26 30 19 26 30 19 25 35 19 23 21 14 ERROR: Degenerate spline segment 21 33 18 25 31 19 23 29 16 23 29 16 23 20 13 ERROR: Degenerate spline segment 22 33 20 27 29 23 27 29 23 24 29 16 21 19 15 ERROR: Degenerate spline segment 19 34 17 28 31 19 28 31 19 21 29 15 21 21 16 ERROR: Degenerate spline segment 19 34 17 28 31 19 28 31 19 21 27 15 22 20 16 ERROR: Degenerate spline segment 21 32 21 26 32 18 26 32 18 22 26 15 23 20 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt Done in 6.978 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 17 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 45 26 5 42 28 6 39 22 15 45 34 15 45 34 15 Running MCMC main jumps ERROR: Degenerate spline segment 43 26 6 43 26 6 42 18 11 37 33 20 45 33 16 ERROR: Degenerate spline segment 44 28 6 44 28 6 40 24 11 37 31 19 45 34 16 ERROR: Degenerate spline segment 44 23 7 44 23 7 40 22 15 40 31 16 45 35 15 ERROR: Degenerate spline segment 45 22 6 45 22 6 41 22 14 40 30 16 46 35 16 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt Done in 3.558 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_fsids_all_-1_-1_-1.txt Processing pathway 18 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 19 36 20 28 26 17 28 26 17 25 16 10 19 22 8 ERROR: Degenerate spline segment 19 36 20 28 26 17 28 26 17 25 16 10 19 22 8 ERROR: Degenerate spline segment 19 36 20 27 25 16 27 25 16 25 16 10 17 24 9 ERROR: Degenerate spline segment 19 36 20 28 26 17 28 26 17 25 16 10 17 24 9 ERROR: Degenerate spline segment 20 34 21 26 25 18 26 25 18 26 16 10 20 25 7 ERROR: Degenerate spline segment 20 34 19 21 31 17 21 31 17 23 23 13 20 23 8 ERROR: Degenerate spline segment 20 34 19 21 31 16 21 31 16 24 23 13 20 25 8 ERROR: Degenerate spline segment 20 34 20 22 30 16 22 30 16 25 24 13 20 25 8 ERROR: Degenerate spline segment 22 34 19 22 34 19 21 32 16 25 22 13 21 24 8 ERROR: Degenerate spline segment 21 35 19 21 33 17 21 33 17 24 21 13 21 24 8 ERROR: Degenerate spline segment 22 32 18 26 28 22 26 28 22 24 25 16 18 22 8 ERROR: Degenerate spline segment 22 34 19 22 34 19 22 30 15 24 21 13 18 23 7 ERROR: Degenerate spline segment 21 34 20 27 29 21 27 29 21 24 25 12 21 21 11 ERROR: Degenerate spline segment 21 34 20 25 28 18 25 28 18 23 22 11 22 21 11 ERROR: Degenerate spline segment 21 35 19 24 30 18 24 26 15 24 26 15 22 21 11 ERROR: Degenerate spline segment 19 35 20 25 32 18 24 23 14 22 21 11 22 21 11 ERROR: Degenerate spline segment 19 34 19 25 32 18 23 22 12 23 22 12 22 21 11 ERROR: Degenerate spline segment 21 34 19 25 32 18 23 23 13 23 23 13 22 23 11 ERROR: Degenerate spline segment 18 34 16 18 34 16 25 31 19 23 22 13 20 24 6 ERROR: Degenerate spline segment 21 35 19 26 29 20 26 29 20 22 24 11 20 23 7 ERROR: Degenerate spline segment 20 33 16 20 33 16 24 26 19 26 26 17 20 23 9 ERROR: Degenerate spline segment 22 33 18 24 30 17 24 30 17 26 23 17 19 23 6 ERROR: Degenerate spline segment 22 33 18 22 33 18 24 32 20 27 24 18 19 23 7 ERROR: Degenerate spline segment 22 33 17 22 33 17 24 30 20 27 24 18 19 23 6 ERROR: Degenerate spline segment 22 33 17 22 33 17 25 30 20 26 24 15 20 24 5 ERROR: Degenerate spline segment 22 33 18 22 33 18 24 31 20 26 24 16 19 26 4 ERROR: Degenerate spline segment 20 33 20 20 33 20 25 33 19 24 22 13 19 26 5 ERROR: Degenerate spline segment 20 33 18 20 33 18 21 36 17 23 22 13 19 26 5 ERROR: Degenerate spline segment 22 34 19 25 29 17 25 29 17 26 22 19 20 26 4 ERROR: Degenerate spline segment 22 32 17 22 34 16 25 23 14 25 23 14 22 21 11 ERROR: Degenerate spline segment 22 32 17 22 34 16 25 23 14 25 23 14 22 21 11 ERROR: Degenerate spline segment 22 32 17 22 32 17 26 28 18 23 24 12 21 21 11 ERROR: Degenerate spline segment 22 32 17 25 30 17 25 30 17 24 23 14 21 21 11 ERROR: Degenerate spline segment 22 33 18 21 33 16 21 33 16 23 22 15 22 23 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt Done in 6.073 sec. dmri_paths done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.cst Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.cst Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.ilf Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.ilf Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.unc Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.unc Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fmajor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fmajor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: fmajor Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fminor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fminor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: fminor Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.atr Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.atr Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.cab Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.cab Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.073 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.ccg Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.073 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.ccg Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.073 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.slfp Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.slfp Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.slft Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.slft Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg23_mni_flt/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_mergepaths --indir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt --in fmajor_PP_avg23_mni_flt/path.pd.nii.gz fminor_PP_avg23_mni_flt/path.pd.nii.gz lh.atr_PP_avg23_mni_flt/path.pd.nii.gz lh.cab_PP_avg23_mni_flt/path.pd.nii.gz lh.ccg_PP_avg23_mni_flt/path.pd.nii.gz lh.cst_AS_avg23_mni_flt/path.pd.nii.gz lh.ilf_AS_avg23_mni_flt/path.pd.nii.gz lh.slfp_PP_avg23_mni_flt/path.pd.nii.gz lh.slft_PP_avg23_mni_flt/path.pd.nii.gz lh.unc_AS_avg23_mni_flt/path.pd.nii.gz rh.atr_PP_avg23_mni_flt/path.pd.nii.gz rh.cab_PP_avg23_mni_flt/path.pd.nii.gz rh.ccg_PP_avg23_mni_flt/path.pd.nii.gz rh.cst_AS_avg23_mni_flt/path.pd.nii.gz rh.ilf_AS_avg23_mni_flt/path.pd.nii.gz rh.slfp_PP_avg23_mni_flt/path.pd.nii.gz rh.slft_PP_avg23_mni_flt/path.pd.nii.gz rh.unc_AS_avg23_mni_flt/path.pd.nii.gz --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/merged_avg23_mni_flt.mgz --ctab /usr/local/freesurfer5.1/FreeSurferColorLUT.txt --thresh .15 cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_mergepaths --indir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt --in fmajor_PP_avg23_mni_flt/path.pd.nii.gz fminor_PP_avg23_mni_flt/path.pd.nii.gz lh.atr_PP_avg23_mni_flt/path.pd.nii.gz lh.cab_PP_avg23_mni_flt/path.pd.nii.gz lh.ccg_PP_avg23_mni_flt/path.pd.nii.gz lh.cst_AS_avg23_mni_flt/path.pd.nii.gz lh.ilf_AS_avg23_mni_flt/path.pd.nii.gz lh.slfp_PP_avg23_mni_flt/path.pd.nii.gz lh.slft_PP_avg23_mni_flt/path.pd.nii.gz lh.unc_AS_avg23_mni_flt/path.pd.nii.gz rh.atr_PP_avg23_mni_flt/path.pd.nii.gz rh.cab_PP_avg23_mni_flt/path.pd.nii.gz rh.ccg_PP_avg23_mni_flt/path.pd.nii.gz rh.cst_AS_avg23_mni_flt/path.pd.nii.gz rh.ilf_AS_avg23_mni_flt/path.pd.nii.gz rh.slfp_PP_avg23_mni_flt/path.pd.nii.gz rh.slft_PP_avg23_mni_flt/path.pd.nii.gz rh.unc_AS_avg23_mni_flt/path.pd.nii.gz --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/merged_avg23_mni_flt.mgz --ctab /usr/local/freesurfer5.1/FreeSurferColorLUT.txt --thresh .15 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt Input files: fmajor_PP_avg23_mni_flt/path.pd.nii.gz fminor_PP_avg23_mni_flt/path.pd.nii.gz lh.atr_PP_avg23_mni_flt/path.pd.nii.gz lh.cab_PP_avg23_mni_flt/path.pd.nii.gz lh.ccg_PP_avg23_mni_flt/path.pd.nii.gz lh.cst_AS_avg23_mni_flt/path.pd.nii.gz lh.ilf_AS_avg23_mni_flt/path.pd.nii.gz lh.slfp_PP_avg23_mni_flt/path.pd.nii.gz lh.slft_PP_avg23_mni_flt/path.pd.nii.gz lh.unc_AS_avg23_mni_flt/path.pd.nii.gz rh.atr_PP_avg23_mni_flt/path.pd.nii.gz rh.cab_PP_avg23_mni_flt/path.pd.nii.gz rh.ccg_PP_avg23_mni_flt/path.pd.nii.gz rh.cst_AS_avg23_mni_flt/path.pd.nii.gz rh.ilf_AS_avg23_mni_flt/path.pd.nii.gz rh.slfp_PP_avg23_mni_flt/path.pd.nii.gz rh.slft_PP_avg23_mni_flt/path.pd.nii.gz rh.unc_AS_avg23_mni_flt/path.pd.nii.gz Output file: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regflt/merged_avg23_mni_flt.mgz Color table file: /usr/local/freesurfer5.1/FreeSurferColorLUT.txt Lower threshold for display: 0.150000 Merging volume 1 of 18... Threshold: 33.75 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 30.15 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 32.25 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 40.05 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 65.55 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 49.35 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 31.5 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 31.35 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 61.95 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 30.75 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 33.75 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 49.5 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 48.9 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 42.3 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 37.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 40.35 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 28.8 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 28.05 Name: Right Uncinate Fasciculus Done in 0.471 sec. dmri_mergepaths done /usr/local/freesurfer5.1/bin/dmri_paths --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr --dwi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --grad /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs --bval /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvals --mask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_end1_dil.nii.gz 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all --lprior /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all --seg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_end1_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_end1_dil.nii.gz End ROI 2: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_end2_dil.nii.gz 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_end2_dil.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all Local aseg prior: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all Local aseg label ID list: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all Segmentation map: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg.nii.gz Type of aseg prior: 0 DWI-to-atlas affine registration: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 5000 Keep every: 5-th sample Update proposal every: 0-th sample Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_bbr_cpts_5.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr Loading DWIs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dwi.nii.gz Loading mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri.bedpostX Loading segmentation map from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg.nii.gz Loading b-values from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/bvals Loading gradients from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/bvecs Loading atlas reference volume from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_end1_dil.nii.gz Loading affine registration from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/xfms/diff2mni.bbr.mat Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_bbr_cpts_5.txt WARN: Initial control point 33 31 -1 is not in DWI volume - is DWI cropped? WARN: Replacing with closest point in volume (33 31 0) Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 1 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 33 30 1 33 30 1 37 31 12 37 29 20 37 27 26 ERROR: Degenerate spline segment 33 31 2 33 31 2 36 32 11 37 29 19 36 23 26 ERROR: Degenerate spline segment 33 31 1 33 31 1 37 35 11 37 27 21 36 25 25 ERROR: Degenerate spline segment 33 31 1 33 31 1 38 32 13 37 25 17 38 27 23 ERROR: Degenerate spline segment 32 31 1 32 31 1 37 33 12 37 25 17 38 28 24 Running MCMC main jumps ERROR: Degenerate spline segment 34 30 2 34 30 2 38 29 11 37 31 19 38 28 26 ERROR: Degenerate spline segment 31 31 0 30 30 2 38 31 13 36 27 26 36 27 26 ERROR: Degenerate spline segment 31 31 0 29 30 2 38 31 13 36 27 26 36 27 26 ERROR: Degenerate spline segment 33 28 0 36 31 8 37 30 15 37 28 24 37 28 24 ERROR: Degenerate spline segment 33 31 1 35 31 4 37 30 14 37 27 26 37 27 26 ERROR: Degenerate spline segment 33 31 2 33 31 2 37 32 13 36 28 23 36 28 25 ERROR: Degenerate spline segment 33 31 3 33 31 3 37 32 13 36 28 23 36 28 26 ERROR: Degenerate spline segment 33 31 3 33 31 3 38 31 13 36 28 23 36 28 26 ERROR: Degenerate spline segment 32 30 2 32 30 2 37 30 10 36 28 23 35 29 27 ERROR: Degenerate spline segment 32 31 0 30 32 0 37 31 9 36 29 25 36 29 25 ERROR: Degenerate spline segment 33 31 0 33 31 0 37 32 10 37 28 24 34 27 27 ERROR: Degenerate spline segment 30 31 1 30 31 1 36 30 10 37 29 20 34 27 28 ERROR: Degenerate spline segment 30 31 1 30 31 1 36 30 10 37 29 20 34 28 27 ERROR: Degenerate spline segment 33 31 1 33 31 1 37 33 11 37 27 20 37 27 25 ERROR: Degenerate spline segment 33 28 1 33 28 1 37 31 10 39 29 19 36 27 24 ERROR: Degenerate spline segment 33 28 0 33 28 0 36 32 10 39 29 19 37 28 25 ERROR: Degenerate spline segment 33 31 1 35 30 7 35 30 7 37 30 21 38 28 21 ERROR: Degenerate spline segment 33 32 0 35 31 8 35 31 8 37 31 17 37 28 25 ERROR: Degenerate spline segment 33 32 0 35 31 6 35 31 6 38 30 15 37 29 25 ERROR: Degenerate spline segment 34 31 1 35 32 7 35 32 7 37 30 14 37 29 25 ERROR: Degenerate spline segment 33 28 1 36 32 9 36 32 9 37 27 15 36 28 24 ERROR: Degenerate spline segment 33 28 1 36 32 10 36 32 10 37 27 15 36 28 24 ERROR: Degenerate spline segment 33 29 3 32 30 3 32 30 3 36 31 10 37 30 24 ERROR: Degenerate spline segment 34 30 1 34 30 1 33 30 4 37 30 10 35 28 27 ERROR: Degenerate spline segment 33 32 2 33 32 2 35 31 6 38 30 14 37 28 24 ERROR: Degenerate spline segment 34 32 2 34 32 2 35 31 6 38 31 15 37 28 24 ERROR: Degenerate spline segment 34 32 2 34 32 2 35 31 6 38 31 15 37 28 24 ERROR: Degenerate spline segment 31 30 0 31 30 0 36 33 11 39 28 17 36 28 27 ERROR: Degenerate spline segment 32 31 0 32 31 0 37 32 13 39 28 17 38 30 24 ERROR: Degenerate spline segment 33 33 1 38 28 6 38 28 6 37 31 16 34 26 27 ERROR: Degenerate spline segment 33 31 0 37 29 18 37 29 18 36 30 20 37 27 22 ERROR: Degenerate spline segment 32 31 1 40 31 17 37 28 18 37 28 18 38 27 23 ERROR: Degenerate spline segment 33 32 1 38 29 16 38 29 16 38 28 21 36 28 26 ERROR: Degenerate spline segment 33 27 0 36 31 9 38 29 17 38 29 17 37 28 24 ERROR: Degenerate spline segment 33 29 3 36 30 9 38 31 18 38 31 18 36 28 25 ERROR: Degenerate spline segment 33 30 2 36 32 10 37 29 16 37 29 16 36 28 25 ERROR: Degenerate spline segment 34 28 3 36 33 8 39 29 16 39 29 16 35 30 24 ERROR: Degenerate spline segment 34 29 5 36 33 11 38 27 15 38 27 15 37 28 23 ERROR: Degenerate spline segment 34 29 3 35 33 9 38 28 17 38 28 17 37 28 23 ERROR: Degenerate spline segment 34 30 2 36 33 10 37 28 18 37 28 18 37 28 26 ERROR: Degenerate spline segment 33 32 2 33 32 2 36 32 12 38 29 14 37 28 22 ERROR: Degenerate spline segment 34 31 1 34 31 1 36 32 12 37 30 15 37 27 21 ERROR: Degenerate spline segment 34 31 3 34 31 3 37 31 9 37 28 23 37 28 27 ERROR: Degenerate spline segment 34 28 2 30 28 1 37 30 11 38 29 25 38 29 25 ERROR: Degenerate spline segment 33 29 1 33 29 1 37 30 12 37 28 20 39 27 25 ERROR: Degenerate spline segment 33 28 0 32 28 3 36 31 7 37 27 21 37 27 21 ERROR: Degenerate spline segment 33 31 2 33 29 5 36 31 7 37 27 23 37 27 23 ERROR: Degenerate spline segment 32 31 1 31 28 3 36 31 7 37 28 26 37 28 26 ERROR: Degenerate spline segment 32 29 4 34 29 4 34 29 4 38 31 19 34 28 27 ERROR: Degenerate spline segment 32 29 4 32 29 4 35 30 6 37 30 19 34 28 27 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr Done in 7.643 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 2 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 29 31 0 29 31 0 28 31 5 26 31 11 27 26 26 ERROR: Degenerate spline segment 29 30 1 29 30 1 29 29 7 26 31 12 28 26 24 ERROR: Degenerate spline segment 31 28 5 31 28 5 26 30 9 26 28 15 26 28 24 ERROR: Degenerate spline segment 30 29 4 30 29 4 26 30 9 26 28 15 26 28 24 ERROR: Degenerate spline segment 31 28 5 31 28 5 27 33 11 26 28 14 26 28 24 Running MCMC main jumps ERROR: Degenerate spline segment 30 28 4 30 28 4 25 33 14 27 29 19 25 28 26 ERROR: Degenerate spline segment 31 28 5 26 31 9 26 32 18 27 26 21 27 26 21 ERROR: Degenerate spline segment 31 28 5 26 31 9 26 32 18 27 26 21 27 26 21 ERROR: Degenerate spline segment 29 30 2 27 32 11 25 30 16 25 30 16 28 26 21 ERROR: Degenerate spline segment 31 29 2 28 33 10 28 33 10 26 31 13 26 28 22 ERROR: Degenerate spline segment 31 29 2 27 33 10 27 33 10 26 31 13 26 28 22 ERROR: Degenerate spline segment 32 30 0 26 32 12 28 28 22 28 28 22 28 26 25 ERROR: Degenerate spline segment 31 31 1 25 30 13 25 28 21 25 28 21 27 27 21 ERROR: Degenerate spline segment 30 31 1 25 30 13 27 28 19 27 28 19 28 26 21 ERROR: Degenerate spline segment 30 31 1 25 34 19 27 31 20 27 31 20 26 25 26 ERROR: Degenerate spline segment 30 31 1 26 33 18 26 33 18 28 31 19 26 25 26 ERROR: Degenerate spline segment 30 31 1 25 34 19 25 34 19 28 32 19 26 24 24 ERROR: Degenerate spline segment 29 32 2 27 32 18 27 32 18 27 31 20 28 26 25 ERROR: Degenerate spline segment 30 32 1 26 32 18 26 32 18 27 31 20 28 26 25 ERROR: Degenerate spline segment 30 31 0 25 32 17 27 26 19 27 26 19 28 24 23 ERROR: Degenerate spline segment 31 31 0 26 34 17 26 28 20 26 28 20 28 26 23 ERROR: Degenerate spline segment 29 30 2 25 31 13 25 30 16 27 27 21 27 27 21 ERROR: Degenerate spline segment 30 30 0 26 33 14 27 28 23 27 28 23 25 28 24 ERROR: Degenerate spline segment 29 29 3 26 32 13 26 28 24 25 28 24 25 28 24 ERROR: Degenerate spline segment 29 29 4 26 32 13 26 28 24 25 28 24 25 28 24 ERROR: Degenerate spline segment 29 30 5 26 31 12 26 28 25 26 28 25 25 28 24 ERROR: Degenerate spline segment 29 30 5 26 31 12 27 28 25 27 28 25 25 28 24 ERROR: Degenerate spline segment 29 30 5 26 31 12 27 28 25 27 28 25 25 28 24 ERROR: Degenerate spline segment 29 30 5 26 32 12 26 28 25 26 28 25 26 28 24 ERROR: Degenerate spline segment 32 31 1 26 30 11 27 28 25 27 28 25 25 27 25 ERROR: Degenerate spline segment 31 32 1 27 33 11 26 28 24 25 27 25 25 27 25 ERROR: Degenerate spline segment 31 31 1 26 34 10 28 27 26 28 27 26 25 27 26 ERROR: Degenerate spline segment 31 31 1 26 31 10 28 27 26 27 28 25 27 28 25 ERROR: Degenerate spline segment 30 32 2 26 30 12 27 28 25 27 28 25 26 27 25 ERROR: Degenerate spline segment 30 31 2 26 30 12 26 29 25 26 27 25 26 27 25 ERROR: Degenerate spline segment 30 31 0 26 34 15 26 34 15 27 29 23 26 28 20 ERROR: Degenerate spline segment 30 31 1 26 32 15 26 32 15 24 30 18 26 27 20 ERROR: Degenerate spline segment 30 31 1 25 31 14 25 31 14 24 31 18 26 27 20 ERROR: Degenerate spline segment 29 31 0 26 31 14 24 30 14 26 27 21 26 27 21 ERROR: Degenerate spline segment 31 31 0 27 31 9 27 37 16 28 26 23 28 26 23 ERROR: Degenerate spline segment 31 31 0 27 30 9 27 35 14 28 26 23 28 26 23 ERROR: Degenerate spline segment 31 30 1 26 32 14 26 29 20 26 29 20 27 28 25 ERROR: Degenerate spline segment 30 30 1 25 31 15 25 31 15 27 31 19 26 28 21 ERROR: Degenerate spline segment 30 31 0 26 30 15 26 30 15 26 29 17 27 28 26 ERROR: Degenerate spline segment 30 32 0 25 31 17 25 31 17 26 29 17 28 27 26 ERROR: Degenerate spline segment 32 31 1 24 32 15 24 32 15 25 30 15 28 27 26 ERROR: Degenerate spline segment 32 31 1 24 32 14 24 32 14 25 30 14 27 27 25 ERROR: Degenerate spline segment 31 32 0 27 31 8 28 32 12 28 32 12 24 28 25 ERROR: Degenerate spline segment 31 32 0 27 31 7 28 32 13 28 32 13 24 28 25 ERROR: Degenerate spline segment 30 31 1 28 33 6 26 32 9 26 32 9 26 27 24 ERROR: Degenerate spline segment 30 31 1 28 33 8 26 32 9 26 32 9 27 27 25 ERROR: Degenerate spline segment 31 31 1 27 29 9 27 29 9 26 30 11 26 28 26 ERROR: Degenerate spline segment 30 32 1 27 31 8 27 31 8 26 30 11 26 28 26 ERROR: Degenerate spline segment 30 27 0 27 32 7 27 31 10 27 31 10 26 28 26 ERROR: Degenerate spline segment 30 28 1 27 32 7 26 31 9 26 31 9 27 28 26 ERROR: Degenerate spline segment 30 28 1 29 33 6 26 32 8 26 32 8 26 28 26 ERROR: Degenerate spline segment 30 31 0 29 30 7 29 30 7 26 31 10 26 28 24 ERROR: Degenerate spline segment 30 30 1 30 30 1 28 33 10 26 30 13 28 29 26 ERROR: Degenerate spline segment 30 30 0 28 33 8 28 33 8 25 29 13 30 24 26 ERROR: Degenerate spline segment 30 28 0 29 34 8 29 34 8 25 29 15 27 28 26 ERROR: Degenerate spline segment 30 31 1 27 31 9 27 31 9 26 30 18 26 28 26 ERROR: Degenerate spline segment 30 31 0 27 33 10 26 31 12 27 28 23 27 28 23 ERROR: Degenerate spline segment 30 31 0 26 32 11 26 32 11 27 29 23 25 28 25 ERROR: Degenerate spline segment 29 31 1 27 32 12 26 32 11 25 28 25 25 28 25 ERROR: Degenerate spline segment 31 32 0 27 32 11 27 32 11 26 29 22 26 28 26 ERROR: Degenerate spline segment 30 31 1 27 32 11 27 32 11 26 28 21 27 28 27 ERROR: Degenerate spline segment 32 30 0 27 33 11 27 33 11 26 28 21 27 28 27 ERROR: Degenerate spline segment 30 32 1 27 33 11 27 33 11 25 28 21 29 29 26 ERROR: Degenerate spline segment 30 32 1 27 33 11 27 33 11 25 28 20 29 29 26 ERROR: Degenerate spline segment 31 31 0 28 31 6 26 30 11 29 26 23 29 26 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr Done in 8.773 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 41 39 1 42 24 6 32 12 6 32 12 6 39 14 2 ERROR: Degenerate spline segment 41 38 1 42 24 6 34 12 7 34 12 7 39 14 2 ERROR: Degenerate spline segment 40 38 1 43 23 6 36 14 6 38 14 4 38 14 4 ERROR: Degenerate spline segment 40 38 1 43 23 6 37 13 6 39 13 3 39 13 3 ERROR: Degenerate spline segment 39 38 0 43 23 6 37 13 6 39 13 3 39 13 3 ERROR: Degenerate spline segment 39 38 0 43 23 6 37 13 6 38 14 4 38 14 4 ERROR: Degenerate spline segment 39 38 0 43 23 6 37 13 6 39 13 3 39 13 3 ERROR: Degenerate spline segment 43 37 4 41 26 4 38 14 7 36 13 5 36 13 5 ERROR: Degenerate spline segment 43 37 4 43 27 5 38 14 7 34 13 4 34 13 4 ERROR: Degenerate spline segment 43 37 4 43 27 5 38 14 7 34 13 4 34 13 4 ERROR: Degenerate spline segment 43 37 4 43 27 5 38 14 7 34 13 4 34 13 4 ERROR: Degenerate spline segment 42 38 4 42 25 5 38 14 7 35 13 5 35 13 5 ERROR: Degenerate spline segment 42 38 2 42 25 5 38 14 7 35 13 5 35 13 5 ERROR: Degenerate spline segment 41 38 1 41 24 5 39 16 7 36 14 5 36 14 5 ERROR: Degenerate spline segment 41 38 1 42 27 5 43 19 7 36 13 6 36 13 6 ERROR: Degenerate spline segment 41 38 1 42 27 5 43 19 7 36 13 6 36 13 6 ERROR: Degenerate spline segment 41 38 1 42 27 5 43 19 7 36 13 5 36 13 5 ERROR: Degenerate spline segment 42 38 0 42 27 5 43 19 7 36 13 6 36 13 6 ERROR: Degenerate spline segment 42 38 0 42 25 6 43 19 7 36 13 5 36 13 5 ERROR: Degenerate spline segment 43 39 1 39 21 9 41 21 7 36 12 8 36 12 8 ERROR: Degenerate spline segment 43 39 1 39 21 9 41 21 7 36 13 6 36 13 6 ERROR: Degenerate spline segment 43 39 1 40 23 9 41 21 7 36 13 6 36 13 6 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr Done in 4.224 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 4 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 21 39 2 21 39 2 22 28 6 22 19 8 27 14 7 ERROR: Degenerate spline segment 22 38 2 22 38 2 22 28 6 22 19 8 27 14 7 ERROR: Degenerate spline segment 22 38 2 22 38 2 21 28 5 22 19 8 28 13 6 ERROR: Degenerate spline segment 22 38 2 22 38 2 21 28 5 23 19 6 28 13 5 ERROR: Degenerate spline segment 21 39 2 21 39 2 21 28 5 23 19 6 28 13 5 ERROR: Degenerate spline segment 22 38 2 22 38 2 21 28 5 23 19 6 28 13 5 ERROR: Degenerate spline segment 22 38 2 22 38 2 21 28 5 23 19 6 28 13 5 ERROR: Degenerate spline segment 19 39 2 19 39 2 22 27 7 23 19 6 27 12 5 Running MCMC main jumps ERROR: Degenerate spline segment 20 39 2 20 39 2 23 30 7 22 25 7 25 14 4 ERROR: Degenerate spline segment 21 38 4 23 23 8 22 24 12 22 24 12 25 15 4 ERROR: Degenerate spline segment 21 39 4 23 22 6 23 22 6 24 23 13 25 15 6 ERROR: Degenerate spline segment 21 39 4 22 22 6 22 22 6 23 23 13 25 15 6 ERROR: Degenerate spline segment 22 38 1 22 28 8 23 21 8 23 21 8 28 13 6 ERROR: Degenerate spline segment 22 38 1 22 27 9 22 18 7 22 18 7 29 11 7 ERROR: Degenerate spline segment 22 38 1 22 27 9 23 18 9 23 18 9 29 11 8 ERROR: Degenerate spline segment 21 38 3 21 24 7 25 18 7 25 18 7 28 13 7 ERROR: Degenerate spline segment 21 38 3 22 24 8 22 24 8 22 20 5 28 13 7 ERROR: Degenerate spline segment 21 38 3 23 24 9 22 21 7 22 21 7 27 14 7 ERROR: Degenerate spline segment 21 37 2 24 26 9 24 26 9 24 19 8 26 15 7 ERROR: Degenerate spline segment 21 37 2 23 24 10 23 24 10 23 20 8 26 15 7 ERROR: Degenerate spline segment 21 37 2 23 24 9 23 24 9 23 20 8 26 15 7 ERROR: Degenerate spline segment 21 37 2 23 24 10 23 24 10 23 20 8 26 15 7 ERROR: Degenerate spline segment 21 37 2 23 23 8 23 23 9 23 23 9 24 14 6 ERROR: Degenerate spline segment 20 40 2 23 24 6 23 24 6 24 17 6 25 15 6 ERROR: Degenerate spline segment 20 40 1 23 24 6 23 22 7 27 14 6 27 14 6 ERROR: Degenerate spline segment 20 40 1 23 22 7 23 22 7 26 16 7 27 14 6 ERROR: Degenerate spline segment 22 38 4 22 29 5 21 26 11 27 13 8 27 13 8 ERROR: Degenerate spline segment 21 38 4 22 22 7 22 22 7 25 16 9 29 12 7 ERROR: Degenerate spline segment 21 38 5 23 26 5 22 21 10 27 15 6 27 15 6 ERROR: Degenerate spline segment 21 38 1 22 22 7 25 18 8 24 17 8 24 17 8 ERROR: Degenerate spline segment 22 39 2 22 23 8 24 19 12 23 17 9 23 17 9 ERROR: Degenerate spline segment 20 37 3 25 23 13 25 23 13 24 19 9 25 18 5 ERROR: Degenerate spline segment 20 37 3 25 22 13 25 22 13 24 19 9 25 18 5 ERROR: Degenerate spline segment 22 41 0 26 24 16 26 24 16 27 22 17 23 19 8 ERROR: Degenerate spline segment 22 41 0 26 24 15 27 25 16 27 25 16 23 19 8 ERROR: Degenerate spline segment 21 37 0 25 22 16 27 23 19 27 23 19 23 17 8 ERROR: Degenerate spline segment 21 38 1 24 22 13 27 24 16 27 24 16 25 14 8 ERROR: Degenerate spline segment 22 39 3 24 24 12 27 25 17 27 25 17 26 14 9 ERROR: Degenerate spline segment 22 39 3 24 24 12 27 25 17 27 25 17 26 14 9 ERROR: Degenerate spline segment 21 39 2 24 24 12 26 23 16 26 23 16 26 14 9 ERROR: Degenerate spline segment 22 40 1 24 22 13 26 23 16 26 23 16 26 14 9 ERROR: Degenerate spline segment 22 40 1 24 22 13 26 23 16 26 23 16 26 14 9 ERROR: Degenerate spline segment 20 39 2 22 24 7 23 21 9 23 21 9 25 15 8 ERROR: Degenerate spline segment 20 38 3 22 25 6 24 21 7 24 21 7 25 15 8 ERROR: Degenerate spline segment 21 38 2 22 22 7 22 22 7 23 22 7 25 15 8 ERROR: Degenerate spline segment 20 37 3 21 24 6 22 22 10 22 22 10 24 15 8 ERROR: Degenerate spline segment 21 38 4 21 24 6 23 24 7 23 24 7 24 15 9 ERROR: Degenerate spline segment 21 38 4 21 24 6 21 24 7 21 24 7 24 16 8 ERROR: Degenerate spline segment 19 39 1 21 30 5 22 22 7 22 22 7 25 14 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr Done in 5.112 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 5 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 41 39 1 42 32 2 42 32 2 39 37 8 34 43 7 ERROR: Degenerate spline segment 43 39 4 43 32 3 43 32 3 38 37 7 36 43 6 ERROR: Degenerate spline segment 43 39 4 43 32 3 43 32 3 38 37 7 35 44 7 ERROR: Degenerate spline segment 43 39 4 42 33 3 42 33 3 38 37 7 35 44 7 ERROR: Degenerate spline segment 43 39 4 43 32 3 43 32 3 38 37 7 35 45 7 ERROR: Degenerate spline segment 42 39 2 42 33 4 42 33 4 38 37 9 35 45 7 ERROR: Degenerate spline segment 41 39 1 42 35 2 42 35 2 38 38 9 35 49 7 ERROR: Degenerate spline segment 41 39 1 41 34 1 41 34 1 38 38 9 35 49 7 ERROR: Degenerate spline segment 41 39 1 42 35 2 42 35 2 38 38 9 35 47 8 ERROR: Degenerate spline segment 41 39 1 42 35 1 42 35 1 39 38 10 35 47 8 ERROR: Degenerate spline segment 40 41 1 42 35 1 42 35 1 39 38 10 35 47 8 ERROR: Degenerate spline segment 40 41 1 42 35 1 42 35 1 39 38 10 35 47 8 ERROR: Degenerate spline segment 40 41 1 42 35 2 42 35 2 39 38 10 35 47 8 ERROR: Degenerate spline segment 40 41 1 42 35 2 42 35 2 38 38 9 35 47 8 ERROR: Degenerate spline segment 40 41 1 42 35 2 42 35 2 38 38 9 35 47 8 ERROR: Degenerate spline segment 42 39 2 42 35 1 42 35 1 38 38 9 35 47 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr Done in 4.316 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 6 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 22 38 3 24 36 6 24 36 6 26 43 9 28 51 9 ERROR: Degenerate spline segment 22 38 3 24 35 5 24 35 5 28 44 7 27 52 9 ERROR: Degenerate spline segment 22 38 3 24 36 6 24 36 6 28 44 7 27 52 9 ERROR: Degenerate spline segment 23 42 2 23 42 2 22 33 4 26 42 8 27 51 12 ERROR: Degenerate spline segment 23 42 2 23 42 2 22 33 4 26 42 8 27 51 12 ERROR: Degenerate spline segment 23 41 3 23 41 3 22 33 4 27 41 9 27 51 11 ERROR: Degenerate spline segment 22 38 3 22 38 3 21 34 5 27 42 9 26 51 7 ERROR: Degenerate spline segment 23 38 4 23 38 4 21 34 5 27 41 9 28 52 7 ERROR: Degenerate spline segment 22 38 4 22 38 4 21 34 5 27 41 9 28 52 7 ERROR: Degenerate spline segment 22 38 4 23 36 2 23 36 2 26 38 12 28 52 10 ERROR: Degenerate spline segment 23 38 4 23 38 4 23 36 2 26 39 15 28 53 10 ERROR: Degenerate spline segment 23 38 4 23 38 4 23 36 1 27 39 15 28 53 10 ERROR: Degenerate spline segment 23 38 3 23 38 3 23 36 2 26 39 14 27 49 9 ERROR: Degenerate spline segment 21 39 4 21 33 3 24 36 7 29 47 8 29 47 8 ERROR: Degenerate spline segment 21 39 4 21 33 3 24 36 7 29 47 8 29 47 8 ERROR: Degenerate spline segment 21 39 4 21 33 3 24 36 7 29 47 8 29 47 8 ERROR: Degenerate spline segment 22 39 3 21 33 3 23 35 6 28 45 7 28 45 7 ERROR: Degenerate spline segment 24 39 1 23 34 3 26 39 10 29 50 8 29 50 8 ERROR: Degenerate spline segment 22 39 3 22 34 5 26 40 8 28 50 9 28 50 9 ERROR: Degenerate spline segment 23 40 3 20 33 4 27 42 9 27 49 9 27 49 9 ERROR: Degenerate spline segment 25 40 2 20 31 4 27 42 9 28 50 7 28 50 7 ERROR: Degenerate spline segment 21 40 0 20 34 1 27 42 9 27 49 9 27 49 9 ERROR: Degenerate spline segment 22 41 3 21 32 5 25 40 10 28 51 8 28 51 8 ERROR: Degenerate spline segment 25 40 1 23 35 5 25 40 10 28 51 8 28 51 8 ERROR: Degenerate spline segment 25 40 1 23 35 5 25 40 10 28 50 8 28 50 8 ERROR: Degenerate spline segment 26 40 2 22 37 4 25 39 11 28 51 7 28 51 7 ERROR: Degenerate spline segment 26 40 2 22 37 3 26 40 11 27 50 8 27 50 8 ERROR: Degenerate spline segment 26 40 2 22 37 3 26 40 11 28 51 7 28 51 7 ERROR: Degenerate spline segment 26 40 2 22 37 3 25 40 11 28 51 7 28 51 7 ERROR: Degenerate spline segment 24 42 2 22 37 3 25 40 11 28 50 8 28 50 8 ERROR: Degenerate spline segment 24 42 2 22 37 3 25 39 12 28 50 8 28 50 8 ERROR: Degenerate spline segment 24 42 2 23 37 4 25 38 12 27 50 8 27 50 8 ERROR: Degenerate spline segment 24 42 2 23 37 4 25 38 12 28 50 9 28 50 9 ERROR: Degenerate spline segment 24 42 2 23 37 4 26 36 13 28 50 8 28 50 8 ERROR: Degenerate spline segment 24 42 2 23 37 4 26 36 13 28 50 9 28 50 9 ERROR: Degenerate spline segment 24 42 2 23 37 4 26 36 13 28 50 9 28 50 9 ERROR: Degenerate spline segment 24 41 2 23 37 4 26 36 13 28 50 9 28 50 9 ERROR: Degenerate spline segment 23 41 2 23 37 4 26 36 13 29 50 8 29 50 8 ERROR: Degenerate spline segment 24 41 1 24 41 1 26 35 15 26 45 10 29 48 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 30 50 6 ERROR: Degenerate spline segment 25 40 1 25 40 1 26 35 15 26 45 10 30 50 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 30 50 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 30 50 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 30 50 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 40 1 25 40 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 40 1 25 40 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 40 1 25 40 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 15 26 45 10 28 52 6 ERROR: Degenerate spline segment 25 40 1 25 40 1 26 35 13 26 45 10 27 51 7 ERROR: Degenerate spline segment 25 39 1 25 39 1 26 35 13 26 45 10 26 51 7 ERROR: Degenerate spline segment 25 40 1 25 40 1 26 35 13 26 45 10 27 51 7 ERROR: Degenerate spline segment 23 39 2 23 39 2 24 35 13 27 43 9 29 49 8 ERROR: Degenerate spline segment 22 39 1 22 39 1 24 35 13 27 43 9 30 49 7 ERROR: Degenerate spline segment 22 39 1 22 39 1 24 35 13 27 43 9 30 49 7 ERROR: Degenerate spline segment 22 38 2 22 38 2 24 35 13 27 43 9 30 49 7 ERROR: Degenerate spline segment 22 39 1 22 39 1 24 35 13 27 43 9 30 49 7 ERROR: Degenerate spline segment 22 38 2 22 38 2 24 36 12 27 44 9 29 47 7 ERROR: Degenerate spline segment 22 39 1 22 39 1 24 36 12 27 44 9 29 47 7 ERROR: Degenerate spline segment 22 38 2 22 38 2 24 36 13 27 44 9 29 47 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr Done in 4.519 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/fmajor_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 7 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr Done in 6.382 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/fminor_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 8 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 29 47 17 28 44 13 38 45 13 38 45 13 36 48 12 ERROR: Degenerate spline segment 29 47 17 28 44 13 39 45 11 39 45 11 36 48 12 ERROR: Degenerate spline segment 29 48 16 28 42 14 38 45 12 38 45 12 36 48 13 ERROR: Degenerate spline segment 27 49 14 28 40 16 37 46 12 37 46 12 35 48 13 ERROR: Degenerate spline segment 28 48 15 28 41 16 35 43 9 35 43 9 36 49 9 ERROR: Degenerate spline segment 28 47 9 32 42 10 32 42 10 36 45 15 36 50 12 ERROR: Degenerate spline segment 27 50 12 28 43 8 35 44 12 35 44 12 34 48 11 ERROR: Degenerate spline segment 29 48 14 29 48 14 29 43 14 37 45 12 34 51 12 ERROR: Degenerate spline segment 28 49 14 28 49 14 28 40 16 36 46 10 37 48 14 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 37 44 8 37 50 15 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 37 44 8 37 50 15 ERROR: Degenerate spline segment 27 50 11 27 41 14 27 41 14 37 44 8 37 50 15 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 37 44 8 37 50 15 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 36 44 9 37 49 14 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 36 44 8 37 49 14 ERROR: Degenerate spline segment 27 50 11 28 42 13 28 42 13 36 44 8 37 49 14 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 36 44 8 37 49 14 ERROR: Degenerate spline segment 27 50 11 29 42 14 29 42 14 35 43 8 36 49 15 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr Done in 3.977 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 9 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 34 33 9 34 33 9 38 42 13 36 46 10 35 51 9 ERROR: Degenerate spline segment 35 33 10 35 33 10 37 43 13 38 43 11 35 51 9 ERROR: Degenerate spline segment 35 33 11 35 33 11 38 38 16 37 45 11 35 51 11 Running MCMC main jumps ERROR: Degenerate spline segment 35 33 12 35 33 12 37 38 14 37 46 11 37 48 11 ERROR: Degenerate spline segment 33 34 9 36 31 12 37 38 14 35 48 8 35 48 8 ERROR: Degenerate spline segment 33 33 10 33 33 10 38 39 13 37 47 9 36 47 8 ERROR: Degenerate spline segment 33 32 9 33 32 9 38 40 13 37 44 9 35 49 9 ERROR: Degenerate spline segment 33 32 8 33 32 8 38 37 13 36 44 9 35 50 9 ERROR: Degenerate spline segment 34 32 10 34 34 9 36 34 13 37 47 12 37 47 12 ERROR: Degenerate spline segment 34 34 9 34 34 9 36 34 13 37 46 12 37 47 12 ERROR: Degenerate spline segment 34 32 10 34 34 9 37 35 14 38 48 12 38 48 12 ERROR: Degenerate spline segment 35 32 10 37 36 15 37 36 15 36 50 7 35 50 8 ERROR: Degenerate spline segment 35 33 10 37 36 15 37 36 15 37 51 7 36 50 8 ERROR: Degenerate spline segment 35 33 10 37 36 15 38 37 15 36 50 8 36 50 8 ERROR: Degenerate spline segment 35 31 11 37 37 15 37 37 12 36 51 9 36 51 9 ERROR: Degenerate spline segment 35 31 11 37 37 15 37 37 12 36 51 8 36 51 8 ERROR: Degenerate spline segment 35 31 11 37 37 15 37 37 12 36 51 9 36 51 9 ERROR: Degenerate spline segment 35 31 11 37 37 15 37 37 12 36 51 8 36 51 8 ERROR: Degenerate spline segment 35 31 11 37 38 13 37 38 10 36 50 9 36 50 9 ERROR: Degenerate spline segment 35 31 11 37 38 11 37 38 11 36 50 9 36 50 8 ERROR: Degenerate spline segment 34 31 10 37 38 12 37 38 12 36 49 10 37 49 9 ERROR: Degenerate spline segment 34 31 10 37 38 12 38 37 11 36 49 10 36 49 10 ERROR: Degenerate spline segment 33 33 9 37 38 12 38 37 11 36 49 9 36 49 9 ERROR: Degenerate spline segment 33 33 9 37 38 12 38 38 11 37 50 9 37 50 9 ERROR: Degenerate spline segment 33 33 8 38 39 11 38 39 11 36 46 10 37 49 10 ERROR: Degenerate spline segment 34 34 10 37 40 11 37 40 11 36 47 11 37 49 10 ERROR: Degenerate spline segment 34 32 12 36 38 11 38 45 13 38 45 13 35 48 8 ERROR: Degenerate spline segment 35 31 12 36 38 11 39 45 12 39 45 12 34 50 8 ERROR: Degenerate spline segment 35 31 12 36 38 11 39 47 12 39 47 12 34 50 7 ERROR: Degenerate spline segment 35 31 12 36 38 11 41 48 12 41 48 12 34 50 7 ERROR: Degenerate spline segment 33 30 9 36 36 13 38 40 11 35 51 11 35 51 11 ERROR: Degenerate spline segment 33 30 9 36 36 13 38 40 11 35 52 10 35 52 10 ERROR: Degenerate spline segment 33 30 9 37 38 13 37 40 12 37 50 11 37 50 11 ERROR: Degenerate spline segment 33 33 9 38 39 13 37 40 12 36 50 12 36 50 12 ERROR: Degenerate spline segment 33 33 9 36 39 11 36 39 11 38 44 13 36 49 12 ERROR: Degenerate spline segment 33 30 10 37 38 13 37 38 13 37 43 14 36 52 11 ERROR: Degenerate spline segment 34 32 11 36 39 11 37 42 13 37 42 13 35 50 10 ERROR: Degenerate spline segment 34 31 10 36 38 12 37 43 13 37 43 13 35 50 11 ERROR: Degenerate spline segment 33 30 10 38 38 13 37 43 12 37 43 12 36 50 11 ERROR: Degenerate spline segment 33 30 10 37 37 14 38 44 11 38 44 11 36 51 12 ERROR: Degenerate spline segment 33 32 8 39 37 15 38 44 13 38 47 14 38 47 14 ERROR: Degenerate spline segment 34 31 8 38 39 15 38 44 13 38 46 14 38 46 14 ERROR: Degenerate spline segment 33 33 10 33 33 10 38 44 14 37 46 13 35 51 11 ERROR: Degenerate spline segment 33 33 10 33 33 10 38 44 14 37 46 13 35 51 11 ERROR: Degenerate spline segment 32 33 9 34 32 9 38 44 14 38 44 14 35 51 11 ERROR: Degenerate spline segment 33 32 10 35 36 10 37 38 11 36 49 12 36 49 12 ERROR: Degenerate spline segment 33 32 10 36 36 9 38 38 9 36 49 12 36 49 12 ERROR: Degenerate spline segment 35 33 11 35 33 11 37 37 12 37 50 12 36 50 13 ERROR: Degenerate spline segment 34 32 11 34 32 11 37 40 12 36 47 11 36 49 14 ERROR: Degenerate spline segment 33 33 9 33 33 9 39 38 15 36 47 11 36 49 11 ERROR: Degenerate spline segment 33 33 9 33 33 9 39 38 15 37 45 10 37 49 14 ERROR: Degenerate spline segment 33 31 9 33 31 9 40 37 15 36 44 12 38 46 14 ERROR: Degenerate spline segment 33 33 9 33 33 9 40 38 15 36 44 12 38 46 14 ERROR: Degenerate spline segment 35 30 8 36 31 11 37 40 17 37 40 17 37 50 8 ERROR: Degenerate spline segment 35 32 11 35 32 11 37 41 13 36 39 19 36 49 12 ERROR: Degenerate spline segment 35 32 11 35 32 11 37 43 11 36 39 19 36 49 12 ERROR: Degenerate spline segment 35 32 11 35 32 11 37 43 11 36 39 19 37 48 10 ERROR: Degenerate spline segment 33 33 9 38 36 14 37 46 12 37 46 12 41 44 10 ERROR: Degenerate spline segment 33 33 9 37 36 14 38 46 13 38 46 13 40 46 10 ERROR: Degenerate spline segment 33 33 9 37 36 14 38 46 13 38 46 13 40 47 10 ERROR: Degenerate spline segment 33 33 9 37 36 14 37 46 13 37 46 13 40 47 10 ERROR: Degenerate spline segment 33 33 9 37 36 14 38 46 13 38 46 13 40 47 10 ERROR: Degenerate spline segment 33 33 9 37 36 14 37 46 13 37 46 13 40 47 9 ERROR: Degenerate spline segment 33 33 9 38 36 13 36 47 12 36 47 12 40 48 10 ERROR: Degenerate spline segment 33 30 10 38 36 13 36 45 14 37 47 12 37 47 12 ERROR: Degenerate spline segment 32 33 10 37 35 13 37 47 12 37 47 12 37 49 12 ERROR: Degenerate spline segment 34 30 12 39 33 14 38 45 13 36 49 12 36 49 12 ERROR: Degenerate spline segment 32 30 10 37 36 12 36 47 13 36 47 13 36 50 12 ERROR: Degenerate spline segment 32 30 10 37 36 12 36 47 13 36 47 13 36 50 12 ERROR: Degenerate spline segment 34 32 11 38 39 13 36 45 11 36 45 11 36 49 12 ERROR: Degenerate spline segment 34 31 12 38 39 13 37 46 10 37 46 10 36 50 13 ERROR: Degenerate spline segment 35 32 11 37 38 11 37 46 11 37 46 11 37 48 12 ERROR: Degenerate spline segment 34 33 9 37 41 9 37 47 10 40 48 11 40 48 11 ERROR: Degenerate spline segment 33 33 8 39 41 11 37 47 10 37 47 10 39 47 11 ERROR: Degenerate spline segment 33 33 8 39 41 11 37 47 10 39 47 11 39 47 11 ERROR: Degenerate spline segment 33 33 9 38 42 12 36 46 8 38 47 13 38 47 13 ERROR: Degenerate spline segment 33 33 9 38 42 12 36 46 8 38 47 13 38 47 13 ERROR: Degenerate spline segment 33 32 10 38 42 12 36 46 8 38 47 13 38 47 13 ERROR: Degenerate spline segment 33 32 10 38 42 12 36 46 8 37 47 13 37 47 13 ERROR: Degenerate spline segment 33 32 10 38 42 12 36 46 8 38 47 13 38 47 13 ERROR: Degenerate spline segment 35 31 11 37 34 14 38 46 13 37 47 12 37 47 12 ERROR: Degenerate spline segment 35 32 11 37 34 14 37 44 12 37 44 12 36 50 13 ERROR: Degenerate spline segment 35 32 11 37 34 14 37 44 12 37 44 12 36 50 13 ERROR: Degenerate spline segment 34 33 9 36 35 12 38 43 13 37 49 13 37 49 13 ERROR: Degenerate spline segment 35 32 12 35 36 10 37 42 11 37 42 11 36 51 12 ERROR: Degenerate spline segment 34 32 11 35 34 12 38 41 9 38 41 9 36 52 11 ERROR: Degenerate spline segment 35 31 11 36 37 11 37 41 12 37 41 12 35 51 9 ERROR: Degenerate spline segment 33 31 10 33 31 10 37 34 13 37 37 11 37 50 9 ERROR: Degenerate spline segment 35 32 10 35 32 10 36 35 11 38 43 14 36 49 9 ERROR: Degenerate spline segment 33 33 9 33 35 9 33 35 9 38 42 11 36 50 8 ERROR: Degenerate spline segment 33 33 9 34 35 10 34 35 10 38 42 10 34 51 11 ERROR: Degenerate spline segment 33 31 10 34 35 10 34 35 10 38 42 10 34 51 11 ERROR: Degenerate spline segment 35 32 9 35 32 9 36 32 13 36 45 10 34 50 7 ERROR: Degenerate spline segment 36 30 8 36 30 8 37 33 15 37 47 12 36 50 13 ERROR: Degenerate spline segment 36 32 12 36 32 12 37 38 15 37 42 13 37 49 12 ERROR: Degenerate spline segment 34 32 12 36 32 11 38 39 14 38 39 14 36 50 12 ERROR: Degenerate spline segment 34 33 9 36 35 13 36 35 13 38 45 13 34 51 10 ERROR: Degenerate spline segment 34 33 9 36 36 12 36 36 12 38 45 13 34 51 10 ERROR: Degenerate spline segment 35 30 8 37 33 13 37 41 16 37 41 16 37 50 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr Done in 6.075 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 10 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps ERROR: Degenerate spline segment 27 49 9 26 36 17 26 36 17 26 38 13 28 31 12 ERROR: Degenerate spline segment 27 48 8 27 40 20 26 36 16 26 36 16 30 33 8 ERROR: Degenerate spline segment 28 50 16 26 41 13 27 43 19 28 32 12 28 32 12 ERROR: Degenerate spline segment 27 51 16 27 43 14 27 43 18 28 32 12 28 32 12 ERROR: Degenerate spline segment 29 49 15 27 42 16 27 42 16 27 37 13 31 33 11 ERROR: Degenerate spline segment 28 47 15 28 47 15 28 45 16 26 37 15 29 34 11 ERROR: Degenerate spline segment 26 52 16 27 45 15 27 45 15 26 37 13 30 31 12 ERROR: Degenerate spline segment 29 51 15 27 46 14 27 46 14 26 36 14 31 31 11 ERROR: Degenerate spline segment 29 48 17 29 48 17 28 46 15 27 33 13 30 32 10 ERROR: Degenerate spline segment 29 48 17 29 48 17 28 46 15 27 33 13 30 32 10 ERROR: Degenerate spline segment 29 48 17 29 48 17 26 46 12 27 35 12 29 33 10 ERROR: Degenerate spline segment 29 51 17 28 42 16 28 42 16 24 35 13 30 31 11 ERROR: Degenerate spline segment 27 50 10 27 50 10 26 38 15 26 32 13 29 32 12 ERROR: Degenerate spline segment 26 49 11 26 49 11 26 38 13 26 32 13 30 32 12 ERROR: Degenerate spline segment 27 49 10 27 49 10 26 40 13 27 31 13 30 33 12 ERROR: Degenerate spline segment 27 49 10 27 49 10 26 40 13 27 31 13 30 33 12 ERROR: Degenerate spline segment 26 49 11 26 49 11 26 40 13 27 31 13 30 33 12 ERROR: Degenerate spline segment 26 48 10 27 43 13 26 42 12 30 31 13 30 31 13 ERROR: Degenerate spline segment 27 48 9 26 47 9 26 44 11 29 32 12 29 32 12 ERROR: Degenerate spline segment 29 48 8 29 48 8 25 45 11 27 30 11 29 32 11 ERROR: Degenerate spline segment 29 49 9 29 49 9 26 45 11 28 31 12 29 32 12 ERROR: Degenerate spline segment 28 48 8 26 49 11 26 45 11 29 32 12 29 32 12 ERROR: Degenerate spline segment 28 48 8 26 49 11 26 45 11 29 32 12 29 32 12 ERROR: Degenerate spline segment 27 50 8 27 47 9 27 47 9 26 32 14 29 31 11 ERROR: Degenerate spline segment 29 48 19 28 43 19 26 43 12 28 32 12 28 32 12 ERROR: Degenerate spline segment 26 49 11 29 47 16 26 44 13 29 32 11 29 32 11 ERROR: Degenerate spline segment 24 50 11 29 47 15 26 45 14 28 32 12 28 32 12 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr Done in 4.768 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 11 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 36 35 2 38 33 1 38 33 1 36 27 5 36 25 6 ERROR: Degenerate spline segment 39 33 1 39 32 2 39 32 2 36 27 5 36 24 7 ERROR: Degenerate spline segment 39 33 1 39 32 2 39 32 2 36 27 5 36 24 7 ERROR: Degenerate spline segment 38 34 1 38 34 1 39 32 2 36 27 5 37 26 6 Running MCMC main jumps ERROR: Degenerate spline segment 38 33 1 38 33 3 38 33 3 36 27 5 36 27 6 ERROR: Degenerate spline segment 38 32 1 38 33 2 38 33 2 36 27 5 36 27 6 ERROR: Degenerate spline segment 38 32 1 38 33 2 37 33 2 36 27 5 36 27 5 ERROR: Degenerate spline segment 38 32 1 37 33 2 37 33 2 36 27 5 36 27 6 ERROR: Degenerate spline segment 38 32 1 38 33 2 38 33 2 36 27 4 36 27 6 ERROR: Degenerate spline segment 38 33 2 38 33 2 38 32 2 36 27 5 36 27 6 ERROR: Degenerate spline segment 38 33 1 38 33 2 38 32 2 36 27 5 36 27 5 ERROR: Degenerate spline segment 39 33 2 38 33 2 38 32 2 36 27 5 36 27 5 ERROR: Degenerate spline segment 39 33 2 38 33 2 38 33 2 36 27 5 36 27 6 ERROR: Degenerate spline segment 39 33 2 38 33 2 38 32 2 36 27 5 36 27 5 ERROR: Degenerate spline segment 39 33 2 38 33 2 38 33 2 36 27 5 36 27 6 ERROR: Degenerate spline segment 39 33 2 38 33 2 38 32 2 36 27 6 36 27 6 ERROR: Degenerate spline segment 37 33 1 37 33 1 38 32 2 36 27 5 36 27 6 ERROR: Degenerate spline segment 39 34 2 37 33 1 39 32 2 36 27 5 36 27 5 ERROR: Degenerate spline segment 38 34 1 37 33 1 39 32 2 36 27 6 36 27 6 ERROR: Degenerate spline segment 39 33 3 39 33 3 38 32 1 36 27 5 35 25 7 ERROR: Degenerate spline segment 38 34 2 40 33 3 38 32 1 36 26 6 36 26 6 ERROR: Degenerate spline segment 39 35 1 39 33 4 37 30 2 36 26 6 36 26 6 ERROR: Degenerate spline segment 39 35 1 39 33 4 37 30 2 36 26 6 36 26 6 ERROR: Degenerate spline segment 41 35 1 40 34 3 38 31 2 35 26 6 35 26 6 ERROR: Degenerate spline segment 40 35 3 41 33 2 38 31 2 36 26 6 36 26 6 ERROR: Degenerate spline segment 39 33 2 41 33 2 38 31 2 36 26 6 36 26 6 ERROR: Degenerate spline segment 40 34 2 40 35 2 42 32 5 35 24 9 35 24 9 ERROR: Degenerate spline segment 40 35 2 40 35 2 42 32 5 35 25 10 34 21 11 ERROR: Degenerate spline segment 41 35 1 41 35 1 42 32 5 35 25 10 35 21 14 ERROR: Degenerate spline segment 41 35 1 40 32 6 40 32 6 34 25 11 36 18 15 ERROR: Degenerate spline segment 40 32 2 40 32 2 43 32 3 34 25 11 37 18 14 ERROR: Degenerate spline segment 39 35 2 39 35 2 43 33 5 34 24 10 37 20 12 ERROR: Degenerate spline segment 39 34 1 39 34 1 43 32 6 35 24 9 37 19 14 ERROR: Degenerate spline segment 39 34 1 39 34 1 43 32 6 34 24 11 37 19 14 ERROR: Degenerate spline segment 39 34 2 39 34 2 43 32 6 34 24 11 37 19 14 ERROR: Degenerate spline segment 39 34 2 39 34 2 42 30 6 34 24 11 37 19 14 ERROR: Degenerate spline segment 37 34 0 39 35 5 39 35 5 34 23 12 36 21 13 ERROR: Degenerate spline segment 37 34 0 39 35 5 39 35 5 34 23 12 36 21 13 ERROR: Degenerate spline segment 40 34 2 40 34 2 41 34 5 34 25 10 37 21 12 ERROR: Degenerate spline segment 40 34 1 40 34 1 39 27 9 35 24 9 35 19 15 ERROR: Degenerate spline segment 37 34 2 41 35 3 35 25 9 35 25 9 36 19 16 ERROR: Degenerate spline segment 37 34 2 41 35 3 36 27 9 36 27 9 37 18 15 ERROR: Degenerate spline segment 37 30 3 41 35 4 34 23 10 35 20 10 35 20 10 ERROR: Degenerate spline segment 37 30 3 41 35 4 34 23 10 36 21 11 36 21 11 ERROR: Degenerate spline segment 39 31 2 39 35 6 34 24 11 35 20 11 35 20 11 ERROR: Degenerate spline segment 36 34 2 42 32 3 35 28 17 35 28 17 37 19 12 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr Done in 3.851 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 12 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 26 35 1 26 35 1 26 33 1 26 31 3 27 23 10 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 9 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 26 35 2 26 33 1 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 27 35 2 27 35 2 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 26 35 2 26 33 1 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 22 8 Running MCMC main jumps ERROR: Degenerate spline segment 26 35 2 26 33 1 26 33 1 26 31 3 26 22 8 ERROR: Degenerate spline segment 26 35 2 26 33 3 26 33 3 26 31 3 26 22 8 ERROR: Degenerate spline segment 25 34 2 25 34 2 26 33 1 26 31 3 26 23 8 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 23 8 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 23 8 ERROR: Degenerate spline segment 26 35 2 26 33 1 26 33 1 26 31 3 26 23 8 ERROR: Degenerate spline segment 26 35 2 26 35 2 26 33 1 26 31 3 26 23 8 ERROR: Degenerate spline segment 25 34 2 25 34 2 26 33 1 26 31 3 26 23 8 ERROR: Degenerate spline segment 26 35 2 25 34 2 25 34 2 26 31 3 27 25 8 ERROR: Degenerate spline segment 26 35 2 25 34 2 25 34 2 26 31 3 27 25 8 ERROR: Degenerate spline segment 25 38 2 25 34 2 26 33 1 26 33 1 27 25 8 ERROR: Degenerate spline segment 25 38 2 25 34 2 25 34 2 26 31 3 28 25 8 ERROR: Degenerate spline segment 25 38 2 25 34 2 25 34 2 26 31 3 28 25 8 ERROR: Degenerate spline segment 25 37 1 25 35 2 25 35 2 26 31 3 27 25 8 ERROR: Degenerate spline segment 25 37 2 24 35 1 26 31 3 26 31 3 27 24 9 ERROR: Degenerate spline segment 25 37 2 24 35 1 26 31 3 26 31 3 27 24 9 ERROR: Degenerate spline segment 25 37 2 24 35 1 26 31 3 26 31 3 27 24 9 ERROR: Degenerate spline segment 25 37 2 25 37 2 27 33 4 26 31 3 27 24 9 ERROR: Degenerate spline segment 23 37 4 25 36 2 25 36 2 26 30 4 27 25 9 ERROR: Degenerate spline segment 24 36 3 24 36 3 25 36 2 26 29 5 28 23 10 ERROR: Degenerate spline segment 23 37 2 25 36 2 25 36 2 26 29 5 28 23 10 ERROR: Degenerate spline segment 23 37 2 25 36 2 25 36 2 26 29 5 28 23 10 ERROR: Degenerate spline segment 23 37 2 25 36 2 25 36 2 26 29 5 28 22 9 ERROR: Degenerate spline segment 23 37 2 24 36 3 24 36 3 26 29 5 28 22 9 ERROR: Degenerate spline segment 23 37 2 23 37 2 26 35 3 26 29 5 28 21 10 ERROR: Degenerate spline segment 23 37 2 26 35 3 26 35 3 26 29 5 28 21 10 ERROR: Degenerate spline segment 23 37 2 25 34 2 25 34 2 25 32 6 29 21 11 ERROR: Degenerate spline segment 23 37 2 26 36 4 24 33 6 24 33 6 29 21 11 ERROR: Degenerate spline segment 23 37 1 23 35 4 23 35 4 23 30 7 28 19 13 ERROR: Degenerate spline segment 23 37 1 24 36 4 24 36 4 23 30 7 28 19 13 ERROR: Degenerate spline segment 23 37 1 23 35 4 23 35 4 23 30 7 28 19 13 ERROR: Degenerate spline segment 23 37 1 23 35 4 23 35 4 23 30 7 28 19 13 ERROR: Degenerate spline segment 23 37 1 23 35 4 23 35 4 23 30 7 28 19 13 ERROR: Degenerate spline segment 24 36 1 24 36 1 21 34 6 22 30 5 28 19 13 ERROR: Degenerate spline segment 26 39 2 21 36 2 22 32 6 22 32 6 26 19 14 ERROR: Degenerate spline segment 25 38 2 21 36 2 22 32 6 22 32 6 26 19 14 ERROR: Degenerate spline segment 26 39 2 26 39 2 22 32 5 25 20 14 29 23 14 ERROR: Degenerate spline segment 25 36 2 25 36 2 23 28 4 24 19 13 29 22 13 ERROR: Degenerate spline segment 24 35 3 24 35 3 22 30 5 22 20 8 29 22 14 ERROR: Degenerate spline segment 24 35 3 24 35 3 22 30 5 21 21 9 29 22 14 ERROR: Degenerate spline segment 27 34 1 24 36 4 24 36 4 22 21 8 29 23 14 ERROR: Degenerate spline segment 27 34 1 27 34 1 24 33 6 22 20 6 30 23 15 ERROR: Degenerate spline segment 27 34 1 24 34 5 24 34 5 22 20 5 29 22 15 ERROR: Degenerate spline segment 23 36 3 22 36 3 22 36 3 22 20 8 29 24 16 ERROR: Degenerate spline segment 23 38 4 23 36 3 23 36 3 23 27 9 25 20 13 ERROR: Degenerate spline segment 23 38 4 23 38 3 23 38 3 24 28 9 25 20 13 ERROR: Degenerate spline segment 23 38 3 23 38 3 23 37 3 24 28 9 25 20 13 ERROR: Degenerate spline segment 23 38 4 23 39 3 23 39 3 24 28 9 25 20 13 ERROR: Degenerate spline segment 23 37 4 23 37 3 23 37 3 24 28 9 25 20 13 ERROR: Degenerate spline segment 23 37 4 23 37 4 23 37 3 24 28 9 25 20 13 ERROR: Degenerate spline segment 23 37 2 23 37 2 24 34 5 23 27 7 25 20 12 ERROR: Degenerate spline segment 25 37 2 25 37 2 21 38 1 26 19 15 28 22 10 ERROR: Degenerate spline segment 24 37 1 23 38 2 23 38 2 27 19 20 29 23 9 ERROR: Degenerate spline segment 24 37 1 23 38 2 23 38 2 27 19 20 29 23 9 ERROR: Degenerate spline segment 25 38 2 21 35 4 21 35 4 26 20 15 29 25 9 ERROR: Degenerate spline segment 24 39 1 22 31 5 22 31 5 26 21 15 29 25 8 ERROR: Degenerate spline segment 26 39 2 21 29 6 21 29 6 25 22 12 29 23 10 ERROR: Degenerate spline segment 24 39 1 22 30 5 22 30 5 25 23 13 29 23 10 ERROR: Degenerate spline segment 25 38 2 22 32 5 22 32 5 24 17 10 28 20 14 ERROR: Degenerate spline segment 24 36 3 24 36 3 22 29 6 23 19 8 28 22 15 ERROR: Degenerate spline segment 24 36 2 24 36 2 23 30 7 23 23 14 28 19 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr Done in 4.503 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 13 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 34 42 16 34 42 16 35 37 18 33 28 17 35 23 15 ERROR: Degenerate spline segment 34 41 16 34 41 16 35 37 18 33 28 17 35 23 15 ERROR: Degenerate spline segment 34 41 16 34 41 16 35 37 18 33 28 17 35 23 15 ERROR: Degenerate spline segment 34 42 16 34 42 16 35 37 18 33 28 17 35 23 15 ERROR: Degenerate spline segment 34 41 16 34 41 16 35 37 18 33 28 17 35 23 15 ERROR: Degenerate spline segment 35 41 16 35 41 16 33 38 17 33 28 18 35 23 15 ERROR: Degenerate spline segment 35 41 16 35 40 16 35 40 16 33 28 18 35 23 15 ERROR: Degenerate spline segment 35 41 16 35 41 16 32 38 17 35 28 17 34 23 15 ERROR: Degenerate spline segment 34 40 15 34 40 15 33 38 16 35 28 17 34 24 14 ERROR: Degenerate spline segment 34 41 15 34 41 15 32 38 17 35 28 17 34 24 14 ERROR: Degenerate spline segment 34 41 15 34 41 15 32 38 17 35 28 17 34 24 14 ERROR: Degenerate spline segment 34 41 15 34 41 15 32 38 17 35 28 17 34 24 14 ERROR: Degenerate spline segment 34 41 15 34 41 15 32 38 17 35 28 17 34 24 14 ERROR: Degenerate spline segment 34 42 15 34 42 15 34 34 17 34 26 14 34 22 12 ERROR: Degenerate spline segment 34 41 16 34 41 16 34 33 18 34 22 14 34 21 11 ERROR: Degenerate spline segment 35 41 16 35 41 16 34 33 18 34 22 14 34 21 11 Running MCMC main jumps ERROR: Degenerate spline segment 34 35 18 34 35 18 34 30 18 34 24 16 35 24 16 ERROR: Degenerate spline segment 34 35 19 34 35 19 34 30 18 34 24 16 35 23 16 ERROR: Degenerate spline segment 33 36 17 36 31 17 34 34 19 35 21 14 35 21 14 ERROR: Degenerate spline segment 33 35 17 36 32 18 34 33 19 34 23 15 34 23 15 ERROR: Degenerate spline segment 33 35 17 35 32 18 35 32 18 34 23 15 33 22 13 ERROR: Degenerate spline segment 33 35 20 34 33 19 34 33 19 34 24 15 34 22 13 ERROR: Degenerate spline segment 34 35 17 34 35 17 34 30 18 34 28 16 34 23 14 ERROR: Degenerate spline segment 35 36 18 35 36 18 34 29 18 35 25 16 36 24 17 ERROR: Degenerate spline segment 34 36 17 34 36 17 34 27 17 34 24 15 35 23 14 ERROR: Degenerate spline segment 34 38 16 34 36 17 34 27 17 34 23 15 34 23 15 ERROR: Degenerate spline segment 34 38 16 34 36 17 34 27 17 35 22 14 35 22 14 ERROR: Degenerate spline segment 33 35 19 34 34 18 34 28 17 35 24 16 35 24 16 ERROR: Degenerate spline segment 34 36 18 34 36 18 34 28 17 35 23 16 34 24 14 ERROR: Degenerate spline segment 34 36 18 34 36 18 34 28 17 35 23 15 34 22 14 ERROR: Degenerate spline segment 34 37 17 34 37 17 33 30 18 35 24 15 34 22 13 ERROR: Degenerate spline segment 34 37 18 34 35 18 34 29 17 35 23 14 35 23 14 ERROR: Degenerate spline segment 34 35 18 34 35 18 33 29 18 34 25 16 35 23 15 ERROR: Degenerate spline segment 34 36 18 34 36 18 33 29 18 34 25 16 35 23 15 ERROR: Degenerate spline segment 34 36 18 34 36 18 33 29 18 34 25 16 35 23 15 ERROR: Degenerate spline segment 34 36 18 34 36 18 33 29 18 34 25 16 35 23 15 ERROR: Degenerate spline segment 34 38 17 34 33 17 34 31 18 34 23 15 34 23 15 ERROR: Degenerate spline segment 34 38 17 33 33 17 33 32 18 35 21 14 35 21 14 ERROR: Degenerate spline segment 34 38 17 32 32 18 32 32 18 34 23 15 33 22 13 ERROR: Degenerate spline segment 34 38 17 32 32 18 34 32 17 35 22 14 35 22 14 ERROR: Degenerate spline segment 35 36 18 34 36 18 34 31 18 35 24 16 35 24 16 ERROR: Degenerate spline segment 34 36 18 34 36 18 34 31 18 34 26 16 34 22 14 ERROR: Degenerate spline segment 34 34 18 34 34 18 34 30 18 34 26 16 35 24 16 ERROR: Degenerate spline segment 34 34 19 34 34 19 34 30 18 34 26 16 35 24 16 ERROR: Degenerate spline segment 35 34 19 35 34 19 34 30 18 34 26 16 34 25 16 ERROR: Degenerate spline segment 34 34 19 34 34 19 34 30 18 35 25 17 34 25 16 ERROR: Degenerate spline segment 35 34 19 33 33 19 34 30 18 34 25 16 34 25 16 ERROR: Degenerate spline segment 35 34 20 34 32 19 34 29 17 34 26 16 34 26 16 ERROR: Degenerate spline segment 33 35 19 34 32 19 34 29 17 33 27 17 33 27 17 ERROR: Degenerate spline segment 34 34 19 34 30 18 34 30 18 33 26 17 34 27 17 ERROR: Degenerate spline segment 35 37 17 34 33 18 34 28 17 34 28 17 34 23 15 ERROR: Degenerate spline segment 34 35 19 34 30 17 34 30 17 35 29 17 34 23 15 ERROR: Degenerate spline segment 34 35 18 34 30 17 34 30 17 34 31 19 34 23 15 ERROR: Degenerate spline segment 33 33 17 34 30 16 34 30 16 34 32 19 34 23 15 ERROR: Degenerate spline segment 34 33 17 34 30 16 34 30 16 34 32 19 34 23 15 ERROR: Degenerate spline segment 34 33 17 35 31 17 35 31 17 34 32 19 34 22 14 ERROR: Degenerate spline segment 34 33 19 35 32 17 34 32 19 34 32 19 34 22 14 ERROR: Degenerate spline segment 34 33 18 34 33 18 34 30 18 34 30 17 34 24 15 ERROR: Degenerate spline segment 34 33 18 34 31 18 34 30 17 34 30 17 35 23 16 ERROR: Degenerate spline segment 34 34 18 33 32 18 34 30 18 34 30 18 35 23 16 ERROR: Degenerate spline segment 35 36 17 33 30 18 34 30 18 34 30 18 34 26 17 ERROR: Degenerate spline segment 34 36 18 34 30 18 34 30 18 34 30 17 34 26 17 ERROR: Degenerate spline segment 34 35 18 33 28 18 33 28 18 34 28 17 34 27 16 ERROR: Degenerate spline segment 34 35 18 33 28 18 34 29 18 34 26 17 34 26 17 ERROR: Degenerate spline segment 34 34 18 34 28 16 33 29 18 33 29 18 34 26 17 ERROR: Degenerate spline segment 34 34 18 34 28 16 34 29 17 34 29 17 34 26 17 ERROR: Degenerate spline segment 34 34 18 34 30 16 34 30 16 33 29 18 34 27 17 ERROR: Degenerate spline segment 34 35 18 33 33 18 34 29 18 34 29 18 34 27 17 ERROR: Degenerate spline segment 34 35 18 34 31 18 34 31 18 34 29 18 34 25 15 ERROR: Degenerate spline segment 34 35 18 34 31 17 34 29 18 34 29 18 34 26 16 ERROR: Degenerate spline segment 34 34 18 34 32 18 34 32 18 34 29 18 34 27 17 ERROR: Degenerate spline segment 33 33 19 35 32 18 34 33 18 33 27 15 33 27 15 ERROR: Degenerate spline segment 33 33 19 35 32 18 34 32 18 34 27 17 34 27 17 ERROR: Degenerate spline segment 33 33 19 34 32 17 34 32 18 34 26 17 34 26 17 ERROR: Degenerate spline segment 33 33 19 34 31 17 34 29 18 34 29 18 34 27 16 ERROR: Degenerate spline segment 34 33 19 34 29 17 34 29 17 33 30 18 34 27 17 ERROR: Degenerate spline segment 34 33 19 34 29 17 33 30 18 33 30 18 34 27 17 ERROR: Degenerate spline segment 34 33 19 34 29 17 33 30 18 33 30 18 34 27 17 ERROR: Degenerate spline segment 35 33 20 36 30 18 33 32 19 35 25 16 35 25 16 ERROR: Degenerate spline segment 35 33 20 36 30 18 33 32 19 35 27 16 35 27 16 ERROR: Degenerate spline segment 35 34 19 33 33 19 33 33 19 35 26 16 35 25 16 ERROR: Degenerate spline segment 35 34 19 34 32 19 33 33 19 35 25 16 35 25 16 ERROR: Degenerate spline segment 35 34 18 34 32 19 34 32 19 34 27 17 35 25 16 ERROR: Degenerate spline segment 34 33 18 34 32 18 34 31 18 35 27 16 35 27 16 ERROR: Degenerate spline segment 34 33 18 34 29 18 34 29 18 35 26 16 36 25 18 ERROR: Degenerate spline segment 33 33 18 34 29 17 34 29 17 35 25 16 36 25 18 ERROR: Degenerate spline segment 34 34 18 34 29 18 34 29 17 35 23 16 35 23 16 ERROR: Degenerate spline segment 34 35 18 34 29 18 34 29 17 34 23 15 34 23 15 ERROR: Degenerate spline segment 34 36 17 34 29 18 34 29 18 34 23 15 34 22 14 ERROR: Degenerate spline segment 34 35 18 34 29 17 34 29 17 34 23 15 34 22 14 ERROR: Degenerate spline segment 33 34 19 34 31 18 34 31 18 34 26 16 35 22 14 ERROR: Degenerate spline segment 34 33 18 33 30 18 33 30 18 34 26 16 35 22 14 ERROR: Degenerate spline segment 34 33 18 34 31 18 34 31 18 34 26 16 35 22 14 ERROR: Degenerate spline segment 34 33 18 35 32 17 35 32 17 34 26 16 35 22 14 ERROR: Degenerate spline segment 33 35 18 34 36 19 33 33 19 33 33 19 36 23 16 ERROR: Degenerate spline segment 34 37 17 34 37 17 33 35 18 34 34 17 35 25 17 ERROR: Degenerate spline segment 34 36 18 34 36 18 33 35 18 33 34 18 35 25 17 ERROR: Degenerate spline segment 34 37 17 34 37 17 33 35 18 33 34 18 35 25 17 ERROR: Degenerate spline segment 34 38 17 34 36 17 34 34 18 34 34 18 35 25 17 ERROR: Degenerate spline segment 35 35 19 35 36 18 34 34 18 34 34 18 35 25 17 ERROR: Degenerate spline segment 35 35 19 35 36 18 33 32 18 33 32 18 35 25 17 ERROR: Degenerate spline segment 33 35 18 33 35 18 34 34 18 33 32 18 35 25 16 ERROR: Degenerate spline segment 33 36 18 33 34 19 33 34 19 33 32 19 34 26 17 ERROR: Degenerate spline segment 33 36 19 33 34 19 33 34 19 34 31 19 34 27 17 ERROR: Degenerate spline segment 33 36 19 36 32 20 36 32 20 35 31 17 34 27 17 ERROR: Degenerate spline segment 33 36 19 35 33 18 35 33 18 34 31 18 34 27 17 ERROR: Degenerate spline segment 33 36 19 36 32 18 36 32 18 34 32 19 34 27 17 ERROR: Degenerate spline segment 35 36 17 35 36 18 35 36 18 34 33 18 34 24 16 ERROR: Degenerate spline segment 35 36 17 35 36 17 34 36 18 34 33 18 34 25 16 ERROR: Degenerate spline segment 35 41 16 35 41 16 35 40 16 34 31 18 34 22 14 ERROR: Degenerate spline segment 34 40 15 35 40 16 35 40 16 34 31 18 34 22 14 ERROR: Degenerate spline segment 34 40 15 35 40 16 35 40 16 34 31 18 34 22 14 ERROR: Degenerate spline segment 34 42 15 34 42 15 34 37 18 34 31 18 34 23 15 ERROR: Degenerate spline segment 34 40 16 34 40 16 37 43 15 36 35 18 35 22 17 ERROR: Degenerate spline segment 35 45 14 35 45 14 36 39 17 34 36 18 35 25 17 ERROR: Degenerate spline segment 35 46 14 35 46 14 34 36 17 34 32 17 34 21 13 ERROR: Degenerate spline segment 35 45 16 35 45 16 34 31 19 33 28 15 34 24 16 ERROR: Degenerate spline segment 35 45 15 35 45 15 34 29 18 33 28 15 33 25 16 ERROR: Degenerate spline segment 36 45 15 36 45 15 34 29 18 33 28 15 33 25 16 ERROR: Degenerate spline segment 36 45 15 35 45 16 34 29 18 33 25 15 33 25 15 ERROR: Degenerate spline segment 35 45 16 35 45 16 34 29 18 33 25 15 33 25 16 ERROR: Degenerate spline segment 35 44 15 35 44 15 35 29 19 33 25 15 35 25 16 ERROR: Degenerate spline segment 35 44 15 35 43 15 35 29 19 33 25 15 33 25 15 ERROR: Degenerate spline segment 35 43 15 35 43 15 36 30 19 34 23 16 34 26 15 ERROR: Degenerate spline segment 35 42 16 35 42 16 35 33 18 34 25 14 36 23 18 ERROR: Degenerate spline segment 35 42 16 35 42 16 35 33 18 34 25 15 36 23 17 ERROR: Degenerate spline segment 33 43 13 33 43 13 33 34 18 34 28 17 35 22 14 ERROR: Degenerate spline segment 33 43 13 33 43 13 34 38 17 34 27 17 34 22 11 ERROR: Degenerate spline segment 35 45 13 35 37 17 34 31 18 34 31 18 35 22 14 ERROR: Degenerate spline segment 35 46 12 34 38 17 34 31 19 34 31 19 35 24 15 ERROR: Degenerate spline segment 33 45 10 34 40 16 34 32 18 34 32 18 34 23 15 ERROR: Degenerate spline segment 35 46 11 34 40 16 34 32 18 34 32 18 34 23 15 ERROR: Degenerate spline segment 34 46 11 34 40 16 34 32 18 34 32 18 34 23 15 ERROR: Degenerate spline segment 35 42 15 35 42 15 34 35 17 34 31 17 34 24 16 ERROR: Degenerate spline segment 35 43 16 35 43 15 35 35 18 35 35 18 35 25 17 ERROR: Degenerate spline segment 36 46 15 36 46 15 36 43 16 33 34 17 35 23 15 ERROR: Degenerate spline segment 34 45 10 34 45 10 37 44 15 34 32 18 34 21 13 ERROR: Degenerate spline segment 34 45 10 33 43 13 33 43 13 36 33 18 35 19 13 ERROR: Degenerate spline segment 35 45 14 35 43 15 35 43 15 34 32 18 34 22 14 ERROR: Degenerate spline segment 35 44 14 35 42 15 35 42 15 34 34 18 34 21 13 ERROR: Degenerate spline segment 35 44 14 35 42 15 35 42 15 34 34 18 34 20 12 ERROR: Degenerate spline segment 35 43 15 35 43 15 34 39 16 34 34 18 34 20 12 ERROR: Degenerate spline segment 35 44 14 35 44 14 34 41 16 34 34 18 34 22 12 ERROR: Degenerate spline segment 35 44 14 35 44 14 34 41 16 34 34 18 34 22 12 ERROR: Degenerate spline segment 33 42 15 36 42 16 36 42 16 34 32 18 35 22 14 ERROR: Degenerate spline segment 34 43 14 36 42 16 36 42 16 34 32 18 35 22 14 ERROR: Degenerate spline segment 34 42 15 34 42 15 35 41 16 34 30 18 34 25 16 ERROR: Degenerate spline segment 35 42 17 35 42 17 35 40 16 33 34 19 34 25 16 ERROR: Degenerate spline segment 34 42 16 35 41 16 35 41 16 33 34 19 35 25 16 ERROR: Degenerate spline segment 34 42 16 35 40 16 35 40 16 33 34 19 35 25 16 ERROR: Degenerate spline segment 35 41 16 35 41 16 36 40 17 34 33 19 35 25 16 ERROR: Degenerate spline segment 34 41 16 34 41 16 39 39 15 34 34 19 35 24 16 ERROR: Degenerate spline segment 35 39 17 35 39 17 39 40 15 34 35 18 34 24 15 ERROR: Degenerate spline segment 34 40 16 35 39 16 35 39 16 34 36 18 34 24 15 ERROR: Degenerate spline segment 35 39 18 37 40 17 37 40 17 34 38 17 35 25 17 ERROR: Degenerate spline segment 35 42 16 36 42 15 36 42 15 34 35 17 35 25 17 ERROR: Degenerate spline segment 35 43 15 35 41 16 35 41 16 34 35 17 36 23 19 ERROR: Degenerate spline segment 37 41 17 37 41 17 37 40 18 34 37 17 36 21 17 ERROR: Degenerate spline segment 37 41 17 37 41 17 37 39 20 35 37 17 36 21 17 ERROR: Degenerate spline segment 36 40 19 36 40 19 35 38 19 35 37 17 36 22 19 ERROR: Degenerate spline segment 35 38 18 35 38 18 36 41 18 35 35 17 36 21 18 ERROR: Degenerate spline segment 35 39 18 35 39 18 37 39 20 35 34 18 36 21 18 ERROR: Degenerate spline segment 35 38 17 35 38 17 37 40 19 34 31 17 36 23 16 ERROR: Degenerate spline segment 35 38 17 35 38 17 35 41 19 33 31 16 35 24 16 ERROR: Degenerate spline segment 35 37 17 35 37 17 36 39 18 34 30 17 35 24 16 ERROR: Degenerate spline segment 35 38 18 34 36 19 34 36 19 34 29 18 34 23 14 ERROR: Degenerate spline segment 35 38 18 35 35 18 35 35 18 34 32 18 34 23 14 ERROR: Degenerate spline segment 35 38 18 35 35 18 35 35 18 34 32 18 34 23 14 ERROR: Degenerate spline segment 35 37 17 35 37 17 34 37 17 34 32 18 34 23 14 ERROR: Degenerate spline segment 35 37 17 35 37 17 34 38 17 34 30 18 34 24 15 ERROR: Degenerate spline segment 35 37 17 35 37 17 34 38 17 34 29 18 35 23 15 ERROR: Degenerate spline segment 35 37 17 35 37 17 34 38 17 34 29 18 35 24 15 ERROR: Degenerate spline segment 35 38 17 35 38 17 34 36 18 34 30 18 35 24 15 ERROR: Degenerate spline segment 34 38 17 34 33 18 33 30 18 33 30 18 34 25 15 ERROR: Degenerate spline segment 34 39 17 34 35 18 33 31 18 35 25 16 35 25 16 ERROR: Degenerate spline segment 34 40 16 34 36 17 34 36 18 33 24 15 33 24 15 ERROR: Degenerate spline segment 35 36 17 35 36 17 34 35 18 34 27 17 35 21 11 ERROR: Degenerate spline segment 35 35 19 35 34 18 35 34 18 34 34 18 34 22 15 ERROR: Degenerate spline segment 35 36 18 35 36 18 34 34 17 34 34 18 34 22 15 ERROR: Degenerate spline segment 35 34 18 35 34 18 34 34 17 34 34 18 34 22 15 ERROR: Degenerate spline segment 35 34 18 35 34 18 34 34 17 34 34 18 34 23 14 ERROR: Degenerate spline segment 35 34 18 35 35 19 35 35 19 34 34 18 34 23 14 ERROR: Degenerate spline segment 35 34 18 35 34 18 34 35 19 34 34 18 34 23 14 ERROR: Degenerate spline segment 35 35 18 35 35 18 34 34 19 34 34 18 34 23 15 ERROR: Degenerate spline segment 35 34 19 35 34 19 33 34 19 34 32 18 34 23 15 ERROR: Degenerate spline segment 34 36 18 34 34 18 34 27 17 35 24 15 35 24 15 ERROR: Degenerate spline segment 34 36 18 34 34 18 34 26 17 34 25 15 34 25 15 ERROR: Degenerate spline segment 35 35 19 35 35 19 36 29 18 35 24 16 34 25 15 ERROR: Degenerate spline segment 35 35 19 34 34 18 36 29 18 34 25 15 34 25 15 ERROR: Degenerate spline segment 35 35 19 34 34 18 36 29 18 35 25 16 35 25 16 ERROR: Degenerate spline segment 34 34 18 34 34 18 36 29 18 35 25 16 35 24 16 ERROR: Degenerate spline segment 35 35 19 34 34 18 36 29 18 35 24 16 35 24 16 ERROR: Degenerate spline segment 34 35 18 35 33 17 34 32 19 34 32 19 34 23 14 ERROR: Degenerate spline segment 34 35 18 34 33 17 34 32 19 34 32 19 34 24 16 ERROR: Degenerate spline segment 34 34 17 34 34 17 34 32 17 34 32 19 34 25 16 ERROR: Degenerate spline segment 34 35 18 34 35 18 34 32 18 34 33 19 34 25 16 ERROR: Degenerate spline segment 33 35 19 34 34 18 34 34 18 34 31 18 34 24 15 ERROR: Degenerate spline segment 34 35 19 34 35 19 35 34 18 34 32 18 34 24 15 ERROR: Degenerate spline segment 34 35 19 34 34 19 34 34 19 34 32 18 34 24 15 ERROR: Degenerate spline segment 32 36 18 34 35 18 33 33 19 33 33 19 35 22 16 ERROR: Degenerate spline segment 34 35 18 34 35 18 33 33 19 34 32 18 34 21 15 ERROR: Degenerate spline segment 35 38 18 36 38 17 33 33 19 33 33 19 35 23 14 ERROR: Degenerate spline segment 35 34 19 35 34 19 33 34 17 34 32 19 34 22 13 ERROR: Degenerate spline segment 33 39 17 34 35 17 34 35 17 34 31 18 35 23 15 ERROR: Degenerate spline segment 35 38 18 35 38 18 34 33 17 35 29 20 33 26 15 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr Done in 6.341 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 14 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 30 38 17 29 28 17 29 28 17 28 23 14 29 23 11 ERROR: Degenerate spline segment 31 40 17 29 28 17 29 28 17 28 23 14 29 22 11 ERROR: Degenerate spline segment 31 40 17 29 28 17 29 28 17 28 23 14 29 22 11 ERROR: Degenerate spline segment 30 38 16 30 29 18 29 25 15 29 25 15 29 22 11 ERROR: Degenerate spline segment 28 39 18 30 29 18 29 27 16 29 24 14 29 24 14 Running MCMC main jumps ERROR: Degenerate spline segment 28 38 18 30 30 18 29 26 15 30 24 15 30 24 15 ERROR: Degenerate spline segment 28 38 18 30 30 18 28 25 15 28 25 15 30 24 13 ERROR: Degenerate spline segment 31 35 17 28 30 18 29 26 16 29 26 16 29 21 13 ERROR: Degenerate spline segment 31 38 16 31 38 16 27 28 18 26 22 15 30 24 14 ERROR: Degenerate spline segment 30 39 16 30 39 16 30 35 19 30 30 18 29 24 15 ERROR: Degenerate spline segment 29 39 17 30 36 18 30 36 18 30 31 18 29 24 15 ERROR: Degenerate spline segment 29 36 17 30 36 16 31 32 19 31 32 19 29 24 15 ERROR: Degenerate spline segment 31 38 16 30 34 17 30 34 17 28 33 20 29 24 16 ERROR: Degenerate spline segment 29 41 16 29 37 17 29 37 17 30 32 19 29 25 15 ERROR: Degenerate spline segment 30 39 18 29 34 18 29 34 18 30 34 19 29 26 17 ERROR: Degenerate spline segment 29 38 17 30 36 18 30 34 19 30 34 19 29 26 17 ERROR: Degenerate spline segment 29 38 17 29 38 17 28 32 18 31 36 17 29 25 16 ERROR: Degenerate spline segment 28 40 18 27 29 17 30 34 18 30 34 18 28 24 18 ERROR: Degenerate spline segment 30 38 17 30 34 19 30 31 18 30 31 18 29 26 17 ERROR: Degenerate spline segment 30 38 17 30 35 20 30 31 18 30 31 18 29 26 17 ERROR: Degenerate spline segment 29 36 18 30 33 19 30 33 19 30 30 18 29 25 16 ERROR: Degenerate spline segment 29 37 18 30 34 19 30 30 18 30 30 18 29 26 17 ERROR: Degenerate spline segment 30 34 19 30 34 19 30 32 18 29 29 18 29 24 15 ERROR: Degenerate spline segment 30 35 19 30 35 19 30 31 18 29 29 18 29 24 15 ERROR: Degenerate spline segment 29 32 19 30 34 19 31 31 17 31 31 17 28 26 18 ERROR: Degenerate spline segment 29 35 18 29 35 18 30 31 18 30 30 18 28 26 18 ERROR: Degenerate spline segment 30 35 19 30 35 19 30 31 18 30 30 18 30 26 16 ERROR: Degenerate spline segment 30 35 19 30 35 19 30 31 18 30 30 18 30 26 16 ERROR: Degenerate spline segment 29 44 13 30 34 19 30 34 19 29 22 15 28 25 17 ERROR: Degenerate spline segment 29 44 13 30 34 19 30 34 19 29 22 15 28 25 17 ERROR: Degenerate spline segment 29 44 13 30 33 19 30 33 19 28 24 16 29 25 16 ERROR: Degenerate spline segment 29 41 15 29 41 15 29 33 18 29 24 14 28 22 14 ERROR: Degenerate spline segment 31 43 14 31 43 13 30 32 18 28 21 14 28 21 14 ERROR: Degenerate spline segment 31 43 14 30 43 14 30 32 18 28 21 14 28 21 14 ERROR: Degenerate spline segment 31 43 14 31 43 14 30 32 19 26 20 14 28 22 14 ERROR: Degenerate spline segment 31 43 14 30 44 13 30 32 19 28 22 14 28 22 14 ERROR: Degenerate spline segment 29 43 15 29 43 15 29 32 18 29 24 15 30 22 13 ERROR: Degenerate spline segment 29 36 18 30 34 18 30 34 18 30 30 18 29 23 14 ERROR: Degenerate spline segment 28 39 18 28 36 18 28 36 18 30 30 18 29 24 15 ERROR: Degenerate spline segment 28 39 18 28 36 18 28 36 18 30 30 18 29 24 15 ERROR: Degenerate spline segment 28 39 18 28 35 19 28 35 19 30 30 18 29 24 15 ERROR: Degenerate spline segment 29 37 18 29 37 18 29 38 17 29 30 16 29 23 15 ERROR: Degenerate spline segment 28 39 17 29 37 18 29 37 18 29 30 16 29 23 15 ERROR: Degenerate spline segment 30 35 17 27 35 19 29 32 20 29 32 20 28 25 17 ERROR: Degenerate spline segment 30 35 18 28 33 18 29 32 18 29 32 18 28 26 17 ERROR: Degenerate spline segment 30 35 18 29 32 18 29 32 18 30 32 18 29 26 17 ERROR: Degenerate spline segment 30 35 19 30 34 19 29 31 18 29 31 18 29 26 17 ERROR: Degenerate spline segment 30 35 19 30 35 19 29 31 18 30 32 18 29 26 17 ERROR: Degenerate spline segment 30 35 19 30 34 19 30 32 18 30 32 18 29 26 17 ERROR: Degenerate spline segment 29 33 18 30 34 19 29 32 18 29 32 18 29 26 17 ERROR: Degenerate spline segment 30 34 18 30 34 18 29 33 18 29 31 18 29 26 18 ERROR: Degenerate spline segment 30 37 16 30 37 16 29 34 18 30 28 15 28 26 17 ERROR: Degenerate spline segment 30 37 17 30 37 17 30 34 18 30 28 17 28 26 17 ERROR: Degenerate spline segment 29 36 17 27 33 19 31 34 17 28 24 19 28 24 19 ERROR: Degenerate spline segment 30 37 17 27 33 19 31 34 17 28 25 19 28 25 19 ERROR: Degenerate spline segment 28 36 19 28 36 19 29 27 17 25 28 19 28 24 19 ERROR: Degenerate spline segment 28 36 19 28 36 19 28 29 18 26 28 17 29 21 18 ERROR: Degenerate spline segment 29 41 15 29 37 17 29 28 18 29 23 14 29 23 14 ERROR: Degenerate spline segment 29 40 16 27 40 16 30 29 18 29 21 11 29 21 11 ERROR: Degenerate spline segment 29 39 17 29 39 17 30 29 18 27 23 13 29 21 12 ERROR: Degenerate spline segment 29 39 17 29 39 17 30 29 18 27 23 13 29 22 13 ERROR: Degenerate spline segment 29 40 17 29 40 17 30 29 18 27 23 13 29 22 13 ERROR: Degenerate spline segment 29 40 17 29 40 17 30 31 18 28 23 12 29 22 13 ERROR: Degenerate spline segment 29 39 17 29 39 17 30 30 19 28 23 12 29 22 13 ERROR: Degenerate spline segment 28 39 17 28 39 17 30 28 18 28 23 12 29 22 13 ERROR: Degenerate spline segment 29 37 18 29 37 18 29 27 17 28 22 13 29 24 15 ERROR: Degenerate spline segment 30 37 17 29 36 18 29 28 17 29 23 14 29 23 14 ERROR: Degenerate spline segment 30 39 17 29 36 18 30 29 18 30 23 14 30 23 14 ERROR: Degenerate spline segment 30 39 17 29 36 18 30 29 18 30 23 14 30 23 14 ERROR: Degenerate spline segment 30 39 16 29 36 17 28 29 20 29 22 13 29 22 13 ERROR: Degenerate spline segment 29 39 17 29 39 17 29 28 18 29 23 13 29 21 13 ERROR: Degenerate spline segment 28 39 17 28 39 17 29 28 18 29 23 13 29 21 13 ERROR: Degenerate spline segment 28 39 17 28 39 17 29 29 18 29 23 13 30 22 13 ERROR: Degenerate spline segment 29 38 17 29 38 17 29 29 18 28 22 11 30 22 13 ERROR: Degenerate spline segment 29 34 18 29 34 18 30 27 17 29 27 16 29 22 14 ERROR: Degenerate spline segment 29 36 17 29 34 18 30 27 17 30 27 17 29 23 14 ERROR: Degenerate spline segment 29 33 19 28 36 17 30 28 18 30 28 18 28 21 13 ERROR: Degenerate spline segment 30 33 19 29 33 18 29 27 16 29 27 16 28 21 13 ERROR: Degenerate spline segment 30 32 19 29 32 17 27 29 18 27 29 18 28 22 14 ERROR: Degenerate spline segment 30 32 19 29 33 18 28 30 17 28 30 17 28 22 14 ERROR: Degenerate spline segment 30 32 19 27 31 17 27 31 17 28 32 19 30 21 12 ERROR: Degenerate spline segment 29 35 18 27 31 17 27 31 17 28 32 20 30 22 13 ERROR: Degenerate spline segment 29 34 18 27 32 19 30 33 19 30 33 19 28 21 13 ERROR: Degenerate spline segment 30 33 17 30 31 18 30 31 18 28 31 17 28 20 16 ERROR: Degenerate spline segment 28 36 19 30 31 18 30 31 18 27 32 20 28 22 14 ERROR: Degenerate spline segment 28 38 19 30 30 18 30 32 17 30 32 17 28 21 16 ERROR: Degenerate spline segment 28 38 19 30 30 18 29 32 18 29 32 18 28 21 16 ERROR: Degenerate spline segment 30 38 18 27 29 18 30 34 18 30 34 18 28 21 16 ERROR: Degenerate spline segment 29 36 18 26 29 18 30 33 19 30 33 19 29 23 14 ERROR: Degenerate spline segment 30 33 18 27 35 18 27 35 18 28 37 20 29 24 15 ERROR: Degenerate spline segment 30 33 18 28 35 17 28 35 17 28 38 20 28 23 16 ERROR: Degenerate spline segment 29 35 18 29 37 18 27 34 18 27 34 18 29 25 15 ERROR: Degenerate spline segment 29 35 18 29 35 18 27 34 18 29 34 18 29 25 15 ERROR: Degenerate spline segment 30 39 16 27 42 15 27 39 20 27 39 20 28 25 17 ERROR: Degenerate spline segment 29 40 19 28 41 18 26 40 21 26 40 21 30 26 16 ERROR: Degenerate spline segment 28 40 17 28 40 20 28 40 20 27 38 22 29 25 15 ERROR: Degenerate spline segment 28 40 18 28 40 18 27 37 18 28 35 20 29 24 14 ERROR: Degenerate spline segment 29 39 17 29 39 17 27 39 20 28 38 20 29 25 15 ERROR: Degenerate spline segment 29 39 16 29 39 16 27 39 20 28 38 20 29 25 15 ERROR: Degenerate spline segment 30 40 16 28 38 18 27 38 20 27 38 20 29 25 16 ERROR: Degenerate spline segment 30 37 16 28 38 18 28 38 18 28 38 20 29 26 17 ERROR: Degenerate spline segment 30 37 18 27 37 20 27 37 20 29 35 18 29 24 15 ERROR: Degenerate spline segment 29 37 17 27 38 20 27 38 20 29 35 18 30 26 15 ERROR: Degenerate spline segment 30 38 17 30 38 17 30 35 18 29 31 18 29 23 15 ERROR: Degenerate spline segment 29 37 17 29 37 17 30 35 18 29 31 18 29 23 15 ERROR: Degenerate spline segment 30 38 17 30 38 17 30 35 18 29 32 18 29 23 15 ERROR: Degenerate spline segment 28 38 17 28 38 17 30 35 18 27 35 19 31 26 17 ERROR: Degenerate spline segment 28 38 18 28 38 18 30 35 18 27 35 19 31 26 17 ERROR: Degenerate spline segment 28 38 17 28 38 17 30 34 19 30 34 20 29 25 16 ERROR: Degenerate spline segment 29 36 18 30 40 16 30 35 19 30 35 19 29 25 15 ERROR: Degenerate spline segment 29 36 18 30 40 16 30 33 19 30 33 19 29 25 15 ERROR: Degenerate spline segment 29 36 18 30 40 16 30 33 19 30 33 19 29 25 15 ERROR: Degenerate spline segment 30 37 16 30 37 16 29 35 18 30 32 19 29 24 16 ERROR: Degenerate spline segment 28 43 17 28 38 19 28 35 18 28 35 18 28 19 17 ERROR: Degenerate spline segment 28 43 17 26 37 19 29 35 18 29 35 18 28 19 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr Done in 5.79 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 15 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 44 34 13 41 32 16 42 27 15 43 24 17 43 24 17 ERROR: Degenerate spline segment 44 37 12 38 26 17 40 23 13 45 23 18 45 23 18 Running MCMC main jumps ERROR: Degenerate spline segment 43 32 18 42 34 17 38 27 16 41 24 14 41 24 14 ERROR: Degenerate spline segment 43 32 16 42 34 17 38 27 16 41 26 14 41 26 14 ERROR: Degenerate spline segment 42 31 14 39 30 17 39 30 17 40 24 15 42 22 14 ERROR: Degenerate spline segment 45 35 15 40 30 15 40 20 14 40 20 14 41 22 16 ERROR: Degenerate spline segment 45 35 15 40 30 15 41 20 14 41 20 14 41 22 16 ERROR: Degenerate spline segment 44 36 13 41 26 15 42 22 15 41 23 13 41 23 13 ERROR: Degenerate spline segment 44 35 14 41 26 15 40 22 15 41 21 13 41 21 13 ERROR: Degenerate spline segment 44 32 13 40 24 15 40 24 15 40 24 14 40 23 12 ERROR: Degenerate spline segment 45 34 13 40 25 15 42 21 15 40 23 12 40 23 12 ERROR: Degenerate spline segment 43 32 18 39 30 16 41 24 15 41 24 15 40 21 12 ERROR: Degenerate spline segment 44 32 19 39 30 17 42 23 15 42 23 15 40 20 12 ERROR: Degenerate spline segment 45 33 18 39 30 15 40 27 16 40 27 16 41 21 15 ERROR: Degenerate spline segment 44 33 18 38 30 15 40 29 16 40 29 16 41 20 16 ERROR: Degenerate spline segment 45 35 15 40 31 16 40 28 14 40 28 14 42 20 15 ERROR: Degenerate spline segment 45 35 15 39 29 16 39 28 16 39 28 16 41 21 15 ERROR: Degenerate spline segment 42 33 15 40 28 16 40 28 16 39 22 15 41 22 16 ERROR: Degenerate spline segment 45 34 15 41 32 16 41 32 16 41 27 15 43 20 17 ERROR: Degenerate spline segment 44 33 15 41 32 16 41 28 14 41 25 14 41 25 14 ERROR: Degenerate spline segment 42 33 14 42 33 14 42 30 14 39 28 17 43 26 15 ERROR: Degenerate spline segment 43 33 14 43 33 14 42 30 14 39 28 17 42 25 15 ERROR: Degenerate spline segment 43 32 14 43 32 14 40 28 15 40 26 15 42 25 15 ERROR: Degenerate spline segment 44 34 14 44 34 14 41 28 16 38 23 14 42 23 16 ERROR: Degenerate spline segment 43 34 14 43 34 14 40 27 15 41 24 15 42 25 15 ERROR: Degenerate spline segment 43 35 14 43 35 14 41 28 15 41 24 15 45 25 15 ERROR: Degenerate spline segment 43 34 14 43 34 14 41 28 15 41 24 15 43 25 16 ERROR: Degenerate spline segment 43 34 14 43 34 14 41 28 15 41 25 15 42 24 16 ERROR: Degenerate spline segment 43 34 14 43 34 14 41 28 15 41 25 15 42 24 16 ERROR: Degenerate spline segment 44 35 14 44 35 14 40 27 15 40 25 15 41 23 14 ERROR: Degenerate spline segment 43 33 13 43 33 13 40 26 15 40 24 14 41 23 14 ERROR: Degenerate spline segment 42 33 15 42 33 15 41 29 15 38 23 15 44 22 15 ERROR: Degenerate spline segment 42 34 14 42 34 14 41 29 15 41 21 15 43 22 16 ERROR: Degenerate spline segment 44 33 15 44 33 15 39 29 21 40 25 14 43 22 16 ERROR: Degenerate spline segment 42 34 14 42 34 14 38 27 19 37 22 12 40 24 15 ERROR: Degenerate spline segment 43 33 19 40 33 15 40 33 15 40 21 15 44 23 15 ERROR: Degenerate spline segment 44 33 15 44 33 15 41 31 16 41 21 15 40 22 15 ERROR: Degenerate spline segment 43 34 15 43 34 15 40 32 15 41 22 15 42 22 17 ERROR: Degenerate spline segment 44 33 16 44 33 16 40 32 15 41 22 15 42 22 17 ERROR: Degenerate spline segment 43 33 15 43 33 15 40 32 15 41 22 15 41 24 16 ERROR: Degenerate spline segment 43 34 13 43 34 14 39 28 15 43 22 14 43 22 14 ERROR: Degenerate spline segment 44 34 13 43 34 14 39 28 15 42 22 14 42 22 14 ERROR: Degenerate spline segment 44 34 13 44 34 13 39 24 15 39 21 14 42 21 13 ERROR: Degenerate spline segment 41 33 14 43 32 18 40 26 15 40 22 13 40 22 13 ERROR: Degenerate spline segment 41 34 16 40 32 17 41 27 14 40 22 13 40 22 13 ERROR: Degenerate spline segment 41 34 16 40 30 17 40 24 15 40 24 15 41 22 12 ERROR: Degenerate spline segment 42 33 17 42 33 17 39 27 16 38 27 18 39 25 18 ERROR: Degenerate spline segment 41 33 17 41 33 17 40 29 15 39 27 18 39 25 18 ERROR: Degenerate spline segment 41 33 17 41 33 17 40 29 15 39 27 18 39 25 18 ERROR: Degenerate spline segment 44 33 16 41 31 16 41 31 16 38 25 17 39 25 18 ERROR: Degenerate spline segment 44 33 16 40 31 16 40 31 16 39 27 16 39 25 18 ERROR: Degenerate spline segment 44 32 19 40 31 16 40 31 16 40 26 15 39 25 18 ERROR: Degenerate spline segment 43 32 14 43 32 14 41 31 15 40 27 15 39 25 18 ERROR: Degenerate spline segment 45 34 15 39 30 18 39 30 18 40 26 16 41 24 14 ERROR: Degenerate spline segment 43 33 15 39 30 17 39 30 17 40 27 15 42 24 15 ERROR: Degenerate spline segment 43 32 17 37 31 17 37 31 17 38 27 16 41 25 16 ERROR: Degenerate spline segment 44 32 17 38 28 18 38 28 18 38 28 16 42 24 16 ERROR: Degenerate spline segment 43 32 17 38 28 17 38 28 17 40 26 14 42 24 16 ERROR: Degenerate spline segment 42 32 17 39 28 18 39 28 18 40 26 15 42 24 15 ERROR: Degenerate spline segment 41 33 17 38 27 18 38 27 18 37 26 18 42 27 15 ERROR: Degenerate spline segment 41 33 17 39 27 17 39 27 17 37 26 18 42 27 15 ERROR: Degenerate spline segment 41 33 17 38 27 18 38 27 18 38 25 18 42 27 15 ERROR: Degenerate spline segment 42 33 17 39 28 15 39 28 16 39 28 16 42 23 13 ERROR: Degenerate spline segment 41 32 18 39 28 15 39 27 16 39 27 16 42 23 13 ERROR: Degenerate spline segment 41 32 18 39 27 16 39 27 16 39 28 16 42 23 13 ERROR: Degenerate spline segment 42 34 17 39 26 16 40 27 16 40 27 16 42 23 13 ERROR: Degenerate spline segment 41 34 17 41 26 16 41 26 16 39 28 16 42 23 13 ERROR: Degenerate spline segment 41 34 17 41 26 16 40 27 17 40 27 17 42 23 13 ERROR: Degenerate spline segment 44 35 14 39 27 16 39 27 16 39 28 15 41 21 12 ERROR: Degenerate spline segment 44 35 14 39 27 16 39 27 16 39 28 15 41 21 12 ERROR: Degenerate spline segment 44 35 13 39 27 16 39 27 15 39 27 15 41 21 12 ERROR: Degenerate spline segment 44 34 16 41 29 16 40 25 15 41 23 13 41 23 13 ERROR: Degenerate spline segment 45 34 13 38 27 16 38 27 16 37 27 17 41 18 13 ERROR: Degenerate spline segment 44 32 13 38 28 17 38 27 16 38 27 16 41 19 13 ERROR: Degenerate spline segment 44 32 13 38 28 17 38 28 17 38 27 16 41 19 13 ERROR: Degenerate spline segment 41 33 16 40 30 18 38 24 16 38 24 16 42 22 14 ERROR: Degenerate spline segment 43 35 14 40 25 15 40 22 15 41 21 15 41 21 15 ERROR: Degenerate spline segment 43 35 14 40 24 15 39 21 14 39 21 14 42 23 15 ERROR: Degenerate spline segment 42 34 17 40 23 13 40 23 13 40 21 11 41 21 13 ERROR: Degenerate spline segment 43 34 14 40 21 16 41 23 16 41 25 16 41 25 16 ERROR: Degenerate spline segment 43 33 14 40 21 15 41 22 16 40 24 15 40 24 15 ERROR: Degenerate spline segment 43 33 14 40 21 16 39 22 16 40 24 15 40 24 15 ERROR: Degenerate spline segment 40 33 14 38 22 18 39 23 14 39 23 14 41 24 14 ERROR: Degenerate spline segment 41 33 17 38 23 15 38 23 15 42 21 16 41 23 14 ERROR: Degenerate spline segment 42 33 16 38 23 15 41 22 14 41 22 14 41 23 14 ERROR: Degenerate spline segment 42 33 16 39 23 15 39 23 15 41 22 14 43 23 16 ERROR: Degenerate spline segment 42 33 16 39 22 15 39 22 15 42 22 14 43 23 16 ERROR: Degenerate spline segment 42 33 16 39 22 15 39 22 15 42 22 14 43 23 16 ERROR: Degenerate spline segment 42 33 16 39 23 15 39 23 15 41 25 15 42 25 15 ERROR: Degenerate spline segment 42 33 16 39 24 15 41 22 15 41 25 14 41 25 14 ERROR: Degenerate spline segment 41 33 16 40 23 15 41 22 15 41 22 15 41 26 14 ERROR: Degenerate spline segment 41 33 16 41 23 15 41 23 15 40 23 13 40 26 14 ERROR: Degenerate spline segment 41 33 16 41 23 15 41 23 15 40 23 13 40 26 14 ERROR: Degenerate spline segment 41 33 16 41 23 15 41 23 15 41 24 14 40 26 14 ERROR: Degenerate spline segment 41 33 16 41 23 15 40 25 14 40 25 14 40 26 14 ERROR: Degenerate spline segment 41 33 17 40 28 15 40 25 15 41 24 15 41 24 15 ERROR: Degenerate spline segment 45 35 16 37 27 16 38 22 15 38 22 15 42 24 15 ERROR: Degenerate spline segment 44 33 17 35 29 17 39 23 14 39 23 14 42 26 15 ERROR: Degenerate spline segment 42 33 17 36 24 16 38 28 17 38 28 17 42 24 16 ERROR: Degenerate spline segment 43 32 18 38 25 15 38 25 15 38 28 15 43 24 15 ERROR: Degenerate spline segment 43 32 18 38 25 15 38 28 17 38 28 17 43 24 15 ERROR: Degenerate spline segment 42 32 17 38 26 15 38 29 17 38 29 17 42 23 15 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr Done in 6.702 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 16 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 20 35 15 20 35 15 24 28 16 23 22 14 22 22 15 ERROR: Degenerate spline segment 19 34 16 19 34 16 26 28 15 23 22 13 23 21 15 ERROR: Degenerate spline segment 19 34 16 19 34 16 26 28 15 23 22 13 23 21 15 Running MCMC main jumps ERROR: Degenerate spline segment 21 33 18 21 33 18 25 29 12 23 24 13 24 22 15 ERROR: Degenerate spline segment 21 33 21 22 33 16 23 27 15 23 27 15 22 23 13 ERROR: Degenerate spline segment 18 33 17 23 32 16 23 25 14 22 22 14 22 22 14 ERROR: Degenerate spline segment 20 32 16 20 32 16 23 23 15 20 27 16 22 23 14 ERROR: Degenerate spline segment 19 33 15 19 33 15 23 23 15 20 27 16 22 23 14 ERROR: Degenerate spline segment 18 35 16 18 35 16 29 24 14 23 26 15 23 22 15 ERROR: Degenerate spline segment 18 35 16 18 35 16 29 24 14 23 25 14 23 22 15 ERROR: Degenerate spline segment 19 35 16 19 35 16 29 24 14 23 25 14 23 22 15 ERROR: Degenerate spline segment 18 35 16 18 36 16 29 23 14 23 22 15 23 22 15 ERROR: Degenerate spline segment 20 36 13 20 34 15 28 23 15 20 24 15 20 24 15 ERROR: Degenerate spline segment 20 33 15 20 33 15 24 32 18 23 26 15 22 21 15 ERROR: Degenerate spline segment 20 35 13 23 36 15 23 36 15 25 25 14 23 21 16 ERROR: Degenerate spline segment 21 35 14 21 35 14 25 38 15 25 26 15 21 20 13 ERROR: Degenerate spline segment 19 33 18 24 33 19 24 33 19 26 32 15 20 23 15 ERROR: Degenerate spline segment 20 33 18 20 33 19 25 33 15 25 33 15 21 20 16 ERROR: Degenerate spline segment 19 34 18 20 33 19 24 33 15 24 33 15 21 18 15 ERROR: Degenerate spline segment 18 33 19 18 33 19 25 33 16 26 32 16 21 18 15 ERROR: Degenerate spline segment 19 34 19 20 33 19 25 33 16 25 33 16 21 18 15 ERROR: Degenerate spline segment 21 33 18 19 33 18 19 33 18 27 32 14 21 20 14 ERROR: Degenerate spline segment 20 33 17 20 33 17 19 32 16 23 32 16 22 19 14 ERROR: Degenerate spline segment 19 33 16 19 33 16 18 32 15 23 32 16 22 19 14 ERROR: Degenerate spline segment 19 37 12 23 30 16 27 24 17 22 22 12 22 22 12 ERROR: Degenerate spline segment 20 35 13 26 26 17 26 26 17 23 25 14 23 21 14 ERROR: Degenerate spline segment 21 32 20 26 30 17 22 24 15 22 20 16 22 20 16 ERROR: Degenerate spline segment 21 33 20 22 33 15 24 27 16 24 27 16 22 23 15 ERROR: Degenerate spline segment 20 33 20 22 33 15 22 29 15 22 29 15 22 23 15 ERROR: Degenerate spline segment 19 33 17 22 33 15 23 30 15 23 30 15 23 22 14 ERROR: Degenerate spline segment 19 34 17 23 32 16 23 32 16 27 30 14 19 22 17 ERROR: Degenerate spline segment 19 35 15 24 32 16 24 32 16 24 30 15 21 23 15 ERROR: Degenerate spline segment 18 35 16 24 31 16 25 31 15 25 31 15 21 23 15 ERROR: Degenerate spline segment 18 34 16 22 32 16 22 32 16 23 30 15 21 23 15 ERROR: Degenerate spline segment 19 33 18 19 33 18 23 33 16 23 32 16 23 24 15 ERROR: Degenerate spline segment 21 33 19 25 33 19 23 33 16 23 33 16 23 24 15 ERROR: Degenerate spline segment 21 34 18 24 33 16 24 33 16 23 32 16 23 24 15 ERROR: Degenerate spline segment 23 33 15 24 32 17 24 32 17 23 31 16 23 24 15 ERROR: Degenerate spline segment 23 33 15 23 33 17 23 33 17 23 31 16 23 23 15 ERROR: Degenerate spline segment 22 33 15 22 33 15 21 33 17 23 31 16 21 25 15 ERROR: Degenerate spline segment 20 34 13 20 34 13 20 33 20 26 32 17 20 24 14 ERROR: Degenerate spline segment 19 35 15 19 35 15 19 33 19 24 30 18 21 21 15 ERROR: Degenerate spline segment 20 35 12 20 35 12 19 33 19 24 31 19 22 23 13 ERROR: Degenerate spline segment 19 35 14 19 35 14 19 33 18 25 32 17 22 23 13 ERROR: Degenerate spline segment 19 34 17 19 33 17 19 33 17 25 31 18 23 21 13 ERROR: Degenerate spline segment 19 33 17 19 33 17 19 33 18 25 31 18 23 21 13 ERROR: Degenerate spline segment 20 33 15 20 33 15 21 34 18 25 31 17 23 20 13 ERROR: Degenerate spline segment 20 33 20 20 33 20 21 33 16 24 29 15 22 20 15 ERROR: Degenerate spline segment 20 34 20 20 34 20 22 33 16 24 29 15 23 20 14 ERROR: Degenerate spline segment 21 33 20 21 33 20 23 33 15 23 28 15 23 21 15 ERROR: Degenerate spline segment 21 33 20 21 33 20 23 33 15 23 28 15 23 21 15 ERROR: Degenerate spline segment 21 33 20 21 33 20 23 33 15 23 28 15 23 21 15 ERROR: Degenerate spline segment 20 33 18 20 33 18 24 32 15 25 30 16 22 22 15 ERROR: Degenerate spline segment 22 34 18 22 34 18 25 32 18 26 32 16 22 22 15 ERROR: Degenerate spline segment 20 33 19 23 33 17 25 32 18 25 32 18 22 22 15 ERROR: Degenerate spline segment 18 35 16 23 31 16 23 31 16 22 25 15 19 24 15 ERROR: Degenerate spline segment 19 36 14 24 31 17 24 31 17 22 25 15 19 24 15 ERROR: Degenerate spline segment 20 34 15 24 30 16 22 27 15 22 27 15 21 24 17 ERROR: Degenerate spline segment 20 34 15 24 30 16 22 27 15 22 27 15 21 24 17 ERROR: Degenerate spline segment 19 34 15 25 31 17 23 29 16 23 29 16 23 20 14 ERROR: Degenerate spline segment 20 35 15 25 29 17 25 29 17 23 26 15 22 22 15 ERROR: Degenerate spline segment 20 35 15 23 28 15 23 28 15 23 27 15 24 22 15 ERROR: Degenerate spline segment 20 34 15 22 29 15 22 29 15 23 27 15 24 24 16 ERROR: Degenerate spline segment 18 33 14 18 33 14 24 27 15 23 24 15 22 21 15 ERROR: Degenerate spline segment 21 33 19 22 33 15 23 29 16 23 29 16 23 22 14 ERROR: Degenerate spline segment 20 34 17 26 31 19 24 28 10 22 20 16 22 20 16 ERROR: Degenerate spline segment 16 32 17 26 34 18 26 34 18 26 22 16 21 24 13 ERROR: Degenerate spline segment 19 33 18 25 35 18 25 35 18 27 25 18 21 24 13 ERROR: Degenerate spline segment 22 33 16 24 33 19 24 33 19 27 25 15 21 24 13 ERROR: Degenerate spline segment 19 33 17 26 33 18 26 33 18 25 24 14 22 21 16 ERROR: Degenerate spline segment 21 33 17 21 33 17 25 30 17 24 25 15 20 20 16 ERROR: Degenerate spline segment 21 34 16 26 29 19 24 26 15 24 26 15 23 24 15 ERROR: Degenerate spline segment 22 33 16 22 33 16 26 26 17 24 21 15 20 24 16 ERROR: Degenerate spline segment 21 32 19 24 30 18 24 23 14 24 23 14 22 20 14 ERROR: Degenerate spline segment 20 34 16 26 28 19 24 21 12 22 23 15 22 23 15 ERROR: Degenerate spline segment 18 34 16 25 31 20 22 25 14 22 25 14 23 22 15 ERROR: Degenerate spline segment 19 32 15 24 30 15 24 30 15 21 24 15 20 26 18 ERROR: Degenerate spline segment 20 34 13 23 32 16 23 32 16 21 24 15 19 26 18 ERROR: Degenerate spline segment 20 33 20 27 30 18 25 28 15 25 28 15 20 23 14 ERROR: Degenerate spline segment 20 33 17 23 33 18 23 33 18 23 25 15 22 20 15 ERROR: Degenerate spline segment 19 34 16 28 31 19 28 31 19 25 23 15 22 18 18 ERROR: Degenerate spline segment 19 34 16 28 32 19 28 32 19 24 23 13 22 19 18 ERROR: Degenerate spline segment 22 32 17 25 32 17 25 32 17 22 24 14 21 20 17 ERROR: Degenerate spline segment 21 33 17 21 33 17 25 35 17 24 22 15 17 24 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr Done in 6.777 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 17 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 43 25 5 43 25 5 39 23 14 42 32 15 44 35 15 ERROR: Degenerate spline segment 45 23 6 45 23 6 38 22 14 40 28 17 43 35 13 ERROR: Degenerate spline segment 44 23 6 44 23 6 38 22 14 40 28 17 43 35 13 ERROR: Degenerate spline segment 44 23 5 44 23 5 38 22 14 41 28 15 42 34 13 ERROR: Degenerate spline segment 46 22 4 46 22 4 37 19 14 39 28 17 44 34 16 Running MCMC main jumps ERROR: Degenerate spline segment 45 21 5 45 21 5 38 19 14 39 28 17 46 34 16 ERROR: Degenerate spline segment 45 22 7 40 21 10 40 23 15 41 33 17 41 33 17 ERROR: Degenerate spline segment 44 23 6 40 21 10 40 21 14 42 33 16 42 33 16 ERROR: Degenerate spline segment 44 23 6 40 21 10 39 22 14 42 33 16 42 33 16 ERROR: Degenerate spline segment 42 22 7 42 22 7 40 24 14 41 31 16 41 33 16 ERROR: Degenerate spline segment 43 22 7 43 22 7 39 22 13 41 29 15 41 33 17 ERROR: Degenerate spline segment 43 22 7 43 22 7 40 21 11 40 29 15 41 34 15 ERROR: Degenerate spline segment 43 22 8 43 22 8 41 22 11 39 27 16 42 32 14 ERROR: Degenerate spline segment 45 21 6 45 21 6 40 22 10 37 27 19 44 33 18 ERROR: Degenerate spline segment 44 21 6 42 24 7 42 24 7 37 27 19 44 33 18 ERROR: Degenerate spline segment 44 21 6 42 24 9 42 24 9 38 28 19 44 34 18 ERROR: Degenerate spline segment 43 20 7 42 24 10 42 24 10 38 28 18 44 33 18 ERROR: Degenerate spline segment 44 21 7 40 22 10 40 22 10 37 27 22 44 33 17 ERROR: Degenerate spline segment 45 22 6 40 23 10 40 23 10 38 29 20 43 32 16 ERROR: Degenerate spline segment 45 22 6 40 23 10 40 23 10 38 29 19 43 32 16 ERROR: Degenerate spline segment 45 22 6 40 22 10 40 22 10 38 29 19 43 32 16 ERROR: Degenerate spline segment 44 23 7 40 22 10 40 22 10 38 28 20 45 34 17 ERROR: Degenerate spline segment 44 22 6 39 23 11 39 23 11 37 30 22 45 34 13 ERROR: Degenerate spline segment 44 21 6 39 23 11 39 23 11 40 29 19 44 34 12 ERROR: Degenerate spline segment 43 22 6 41 23 10 41 23 10 40 26 16 41 34 15 ERROR: Degenerate spline segment 42 22 9 42 22 9 41 22 8 40 25 15 42 34 16 ERROR: Degenerate spline segment 42 21 8 42 21 8 42 22 8 40 22 13 41 33 17 ERROR: Degenerate spline segment 42 22 8 42 22 8 42 22 9 38 19 12 42 33 16 ERROR: Degenerate spline segment 42 21 8 42 21 8 42 22 9 38 19 12 43 33 16 ERROR: Degenerate spline segment 42 22 8 42 21 8 42 21 8 38 19 12 43 33 16 ERROR: Degenerate spline segment 42 21 8 42 21 8 42 22 9 38 19 11 43 35 17 ERROR: Degenerate spline segment 42 21 8 42 22 9 42 22 9 38 19 11 43 35 17 ERROR: Degenerate spline segment 43 22 7 42 22 10 42 22 10 38 19 12 43 35 17 ERROR: Degenerate spline segment 44 22 7 44 22 7 42 22 10 38 19 12 43 35 17 ERROR: Degenerate spline segment 43 22 5 44 22 9 44 22 9 38 19 12 43 35 17 ERROR: Degenerate spline segment 43 22 5 44 22 9 44 22 9 38 19 12 42 33 17 ERROR: Degenerate spline segment 44 23 6 44 23 6 42 23 7 37 24 17 43 34 15 ERROR: Degenerate spline segment 42 22 7 43 24 8 43 24 8 38 24 16 44 35 15 ERROR: Degenerate spline segment 44 21 6 41 23 10 41 23 10 38 21 17 45 37 13 ERROR: Degenerate spline segment 45 22 5 40 21 11 40 21 11 41 24 15 41 36 15 ERROR: Degenerate spline segment 45 20 5 40 22 10 41 24 14 41 24 14 41 36 15 ERROR: Degenerate spline segment 42 21 8 39 29 9 38 24 15 38 24 15 43 35 14 ERROR: Degenerate spline segment 42 21 8 39 30 10 38 24 16 38 24 16 44 36 13 ERROR: Degenerate spline segment 44 21 7 39 25 15 37 28 18 37 28 18 43 34 14 ERROR: Degenerate spline segment 42 21 8 43 21 7 39 28 15 39 28 15 41 36 15 ERROR: Degenerate spline segment 42 22 8 43 22 8 39 26 16 39 26 16 41 36 15 ERROR: Degenerate spline segment 42 24 9 39 21 13 40 22 14 40 22 14 44 34 16 ERROR: Degenerate spline segment 42 23 10 41 22 14 41 22 14 39 24 14 44 34 16 ERROR: Degenerate spline segment 43 25 9 41 22 13 38 22 13 38 22 13 44 35 16 ERROR: Degenerate spline segment 42 22 8 40 22 14 39 29 15 39 29 15 44 33 16 ERROR: Degenerate spline segment 44 23 5 39 21 14 38 28 16 38 28 16 43 32 15 ERROR: Degenerate spline segment 44 24 5 38 19 13 40 29 15 40 29 15 45 34 16 ERROR: Degenerate spline segment 43 24 6 41 22 12 40 30 16 40 30 16 45 35 15 ERROR: Degenerate spline segment 42 22 7 40 24 15 40 24 15 41 32 18 46 35 13 ERROR: Degenerate spline segment 42 22 8 40 23 14 40 23 14 40 33 15 44 32 13 ERROR: Degenerate spline segment 45 23 6 41 22 13 41 22 13 40 27 15 41 34 15 ERROR: Degenerate spline segment 43 22 6 40 22 13 40 22 13 39 26 15 41 33 17 ERROR: Degenerate spline segment 43 22 8 38 22 13 38 22 13 40 25 15 42 32 14 ERROR: Degenerate spline segment 43 22 7 39 22 14 39 22 14 40 25 15 42 32 14 ERROR: Degenerate spline segment 43 22 6 40 23 13 40 23 13 40 26 16 42 32 14 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr Done in 6.258 sec. Creating output directory /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_end1_dil.nii.gz Loading end ROI from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_end2_dil.nii.gz Loading control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_bbr_fsids_all_-1_-1_-1.txt Processing pathway 18 of 18... Initializing MCMC Running MCMC burn-in jumps ERROR: Degenerate spline segment 19 34 18 24 29 15 22 23 14 22 23 14 20 23 5 ERROR: Degenerate spline segment 17 35 18 24 29 15 22 23 14 22 23 14 20 23 5 Running MCMC main jumps ERROR: Degenerate spline segment 20 33 17 20 33 17 20 22 16 27 21 16 20 23 6 ERROR: Degenerate spline segment 19 34 19 26 27 18 24 23 11 24 23 11 21 21 10 ERROR: Degenerate spline segment 19 34 19 26 27 18 23 24 12 23 24 12 21 21 10 ERROR: Degenerate spline segment 19 34 20 26 30 17 23 22 14 23 22 14 21 21 10 ERROR: Degenerate spline segment 19 34 20 26 30 17 24 23 13 24 23 13 22 21 10 ERROR: Degenerate spline segment 19 33 16 23 32 18 26 21 12 26 21 12 20 25 5 ERROR: Degenerate spline segment 19 33 16 24 31 18 25 21 12 25 21 12 20 25 5 ERROR: Degenerate spline segment 19 33 19 25 31 19 25 21 12 25 21 12 19 25 5 ERROR: Degenerate spline segment 19 33 17 25 31 19 26 20 13 26 20 13 19 25 5 ERROR: Degenerate spline segment 19 33 17 25 32 18 25 20 12 25 20 12 19 25 5 ERROR: Degenerate spline segment 22 32 16 24 23 13 24 23 13 25 20 13 19 24 8 ERROR: Degenerate spline segment 22 32 16 24 24 12 24 24 12 25 20 13 20 23 9 ERROR: Degenerate spline segment 21 34 18 23 31 15 25 22 15 25 22 15 22 22 10 ERROR: Degenerate spline segment 19 33 17 25 32 19 27 28 21 22 22 10 22 22 10 ERROR: Degenerate spline segment 19 34 16 24 32 16 24 32 16 23 23 9 21 21 10 ERROR: Degenerate spline segment 19 33 17 25 32 16 25 32 16 25 29 17 22 23 11 ERROR: Degenerate spline segment 19 34 17 24 32 18 24 32 18 26 24 14 20 20 8 ERROR: Degenerate spline segment 19 34 17 24 32 18 24 32 18 26 23 14 20 22 9 ERROR: Degenerate spline segment 19 33 17 23 33 18 23 33 18 26 21 13 20 23 11 ERROR: Degenerate spline segment 19 33 18 23 33 18 23 33 18 24 22 13 20 23 11 ERROR: Degenerate spline segment 22 33 17 27 33 19 27 33 19 24 21 12 20 24 11 ERROR: Degenerate spline segment 19 33 17 27 33 19 27 33 19 23 23 11 20 24 11 ERROR: Degenerate spline segment 21 33 21 24 32 19 24 32 19 24 22 12 20 24 11 ERROR: Degenerate spline segment 19 34 18 19 34 18 25 31 19 26 22 14 20 23 9 ERROR: Degenerate spline segment 20 33 19 20 33 19 23 32 20 24 24 13 20 23 9 ERROR: Degenerate spline segment 20 32 19 26 33 17 26 33 17 23 22 12 19 24 3 ERROR: Degenerate spline segment 24 36 15 24 25 14 24 25 14 21 23 9 20 27 5 ERROR: Degenerate spline segment 24 36 15 23 27 16 23 27 16 24 24 11 19 25 4 ERROR: Degenerate spline segment 24 36 15 22 27 15 22 27 15 24 24 11 19 25 4 ERROR: Degenerate spline segment 24 36 15 23 27 16 24 26 13 24 26 13 20 23 6 ERROR: Degenerate spline segment 23 35 15 21 24 15 23 23 12 23 23 12 21 23 7 ERROR: Degenerate spline segment 24 36 14 25 24 16 23 22 12 23 22 12 19 24 8 ERROR: Degenerate spline segment 24 36 15 23 23 14 23 21 10 23 21 10 22 23 10 ERROR: Degenerate spline segment 24 36 15 23 22 14 23 25 12 22 23 10 22 23 10 ERROR: Degenerate spline segment 22 34 17 26 29 18 26 29 18 24 24 12 21 23 7 ERROR: Degenerate spline segment 21 34 16 27 26 16 27 26 16 22 24 15 21 23 7 ERROR: Degenerate spline segment 21 34 16 26 24 15 26 24 15 24 24 13 21 23 7 ERROR: Degenerate spline segment 21 34 16 26 24 16 26 24 16 24 24 13 21 23 7 ERROR: Degenerate spline segment 20 33 15 23 24 15 23 24 15 24 25 13 21 24 5 ERROR: Degenerate spline segment 20 33 15 23 24 15 24 25 15 24 25 15 21 24 5 ERROR: Degenerate spline segment 19 36 14 23 23 13 23 23 13 23 23 11 20 24 6 ERROR: Degenerate spline segment 19 34 17 26 21 14 26 21 14 25 26 12 20 23 5 ERROR: Degenerate spline segment 19 36 17 24 20 13 24 20 13 23 27 8 20 24 6 ERROR: Degenerate spline segment 18 36 16 24 20 13 24 20 13 22 27 8 19 24 7 ERROR: Degenerate spline segment 18 36 16 24 20 13 24 20 13 22 27 8 19 24 7 ERROR: Degenerate spline segment 18 36 16 26 21 13 26 21 13 22 28 9 19 24 7 ERROR: Degenerate spline segment 18 36 16 26 21 13 26 21 13 22 28 9 19 23 6 ERROR: Degenerate spline segment 18 36 16 26 21 13 26 21 13 22 28 9 19 23 6 ERROR: Degenerate spline segment 20 33 15 25 23 13 25 27 14 25 27 14 21 23 7 ERROR: Degenerate spline segment 22 32 18 26 29 18 26 29 18 27 25 16 21 25 10 ERROR: Degenerate spline segment 21 33 16 24 29 15 24 29 15 26 25 15 21 25 10 ERROR: Degenerate spline segment 21 32 16 24 29 15 24 29 15 25 25 15 21 25 10 ERROR: Degenerate spline segment 21 32 16 25 29 14 25 29 14 25 25 15 21 25 10 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr Done in 6.051 sec. dmri_paths done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.cst Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.076 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cst --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.cst Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cst_AS_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.ilf Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ilf --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.ilf Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ilf_AS_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.unc Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.unc --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.unc Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.unc_AS_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fmajor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fmajor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: fmajor Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fmajor_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.082 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fminor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path fminor --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: fminor Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/fminor_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.073 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.atr Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.atr --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.atr Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.atr_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.cab Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.cab --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.cab Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.cab_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.ccg Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.075 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.ccg --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.ccg Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.ccg_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.slfp Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.073 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slfp --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.slfp Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slfp_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.08 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path lh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: lh.slft Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/lh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.074 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_pathstats --intrc /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr --dtbase /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit --path rh.slft --subj freesurfer --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.overall.txt --outvox /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input tracula directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr Input DTI fit base: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dmri/dtifit Pathway name: rh.slft Subject name: freesurfer Output file for overall measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt Computing statistics on /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr... Loading spline control points from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/cpts.map.txt Loading spline mask from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/path.pd.nii.gz Writing values along spline to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/rh.slft_PP_avg23_mni_bbr/pathstats.byvoxel.txt Done in 0.08 sec. dmri_pathstats done /usr/local/freesurfer5.1/bin/dmri_mergepaths --indir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr --in fmajor_PP_avg23_mni_bbr/path.pd.nii.gz fminor_PP_avg23_mni_bbr/path.pd.nii.gz lh.atr_PP_avg23_mni_bbr/path.pd.nii.gz lh.cab_PP_avg23_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz lh.cst_AS_avg23_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz lh.slft_PP_avg23_mni_bbr/path.pd.nii.gz lh.unc_AS_avg23_mni_bbr/path.pd.nii.gz rh.atr_PP_avg23_mni_bbr/path.pd.nii.gz rh.cab_PP_avg23_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz rh.cst_AS_avg23_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz rh.slft_PP_avg23_mni_bbr/path.pd.nii.gz rh.unc_AS_avg23_mni_bbr/path.pd.nii.gz --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/merged_avg23_mni_bbr.mgz --ctab /usr/local/freesurfer5.1/FreeSurferColorLUT.txt --thresh .15 cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data cmdline /usr/local/freesurfer5.1/bin/dmri_mergepaths --indir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr --in fmajor_PP_avg23_mni_bbr/path.pd.nii.gz fminor_PP_avg23_mni_bbr/path.pd.nii.gz lh.atr_PP_avg23_mni_bbr/path.pd.nii.gz lh.cab_PP_avg23_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz lh.cst_AS_avg23_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz lh.slft_PP_avg23_mni_bbr/path.pd.nii.gz lh.unc_AS_avg23_mni_bbr/path.pd.nii.gz rh.atr_PP_avg23_mni_bbr/path.pd.nii.gz rh.cab_PP_avg23_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz rh.cst_AS_avg23_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz rh.slft_PP_avg23_mni_bbr/path.pd.nii.gz rh.unc_AS_avg23_mni_bbr/path.pd.nii.gz --out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/merged_avg23_mni_bbr.mgz --ctab /usr/local/freesurfer5.1/FreeSurferColorLUT.txt --thresh .15 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Input directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr Input files: fmajor_PP_avg23_mni_bbr/path.pd.nii.gz fminor_PP_avg23_mni_bbr/path.pd.nii.gz lh.atr_PP_avg23_mni_bbr/path.pd.nii.gz lh.cab_PP_avg23_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz lh.cst_AS_avg23_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz lh.slft_PP_avg23_mni_bbr/path.pd.nii.gz lh.unc_AS_avg23_mni_bbr/path.pd.nii.gz rh.atr_PP_avg23_mni_bbr/path.pd.nii.gz rh.cab_PP_avg23_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg23_mni_bbr/path.pd.nii.gz rh.cst_AS_avg23_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg23_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg23_mni_bbr/path.pd.nii.gz rh.slft_PP_avg23_mni_bbr/path.pd.nii.gz rh.unc_AS_avg23_mni_bbr/path.pd.nii.gz Output file: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1064/data/freesurfer/dpath/5cpts/priormni/seg14/initmni/regbbr/merged_avg23_mni_bbr.mgz Color table file: /usr/local/freesurfer5.1/FreeSurferColorLUT.txt Lower threshold for display: 0.150000 Merging volume 1 of 18... Threshold: 26.1 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 35.25 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 32.55 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 29.55 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 83.1 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 48.6 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 64.5 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 42.15 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 37.65 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 33.45 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 33.75 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 27.9 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 54.15 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 43.05 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 33.9 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 37.95 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 33 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 39.15 Name: Right Uncinate Fasciculus Done in 0.468 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Thu Apr 11 16:13:53 CDT 2013 New invocation of trac-all Tue Dec 3 16:14:30 CST 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data /Applications/Freesurfer5.3/bin/trac-all -prep -c dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data FREESURFER_HOME /Applications/Freesurfer5.3 Actual FREESURFER_HOME /Applications/Freesurfer5.3 build-stamp.txt: freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 854M wired, 2596M active, 782M inactive, 4231M used, 8042M free. ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/03-22:14:31-GMT BuildTimeStamp: May 13 2013 16:45:47 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/03-22:14:31-GMT BuildTimeStamp: May 13 2013 16:45:47 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/03-22:14:31-GMT BuildTimeStamp: May 13 2013 16:45:47 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/03-22:14:31-GMT BuildTimeStamp: May 13 2013 16:45:47 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/03-22:14:31-GMT BuildTimeStamp: May 13 2013 16:45:47 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /Applications/Freesurfer5.3 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 854M wired, 2585M active, 781M inactive, 4220M used, 8054M free. #------------------------------------- /Applications/Freesurfer5.3/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Dec 3 16:14:33 CST 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dti/orig/N1064-dti.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dti/orig/N1064-dti.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/dti/orig/N1064-dti.nii.gz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0003 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0004 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0005 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0006 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0007 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0008 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0009 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0010 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0011 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0012 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi_tmp0013 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs.norot xfmrot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.ecclog /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs.norot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/bvecs ln -sf /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/data.nii.gz fslroi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz 0 2 fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz -Tmean /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz bet /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff #------------------------------------- #@# Intra-subject registration Tue Dec 3 16:16:51 CST 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz... flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz --targ /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.dat tkregister_tcl /Applications/Freesurfer5.3/tktools/tkregister2.tcl target volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb_brain_anat.flt.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.flt.mat -cost corratio convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.log Tue Dec 3 16:17:24 CST 2013 setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data /Applications/Freesurfer5.3/bin/bbregister --s freesurfer --init-fsl --dti --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --fslmat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 FREESURFER_HOME /Applications/Freesurfer5.3 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii... fslregister --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister --dof 6 --fsvol brainmask.mgz Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat.fslregister.log Tue Dec 3 16:17:24 CST 2013 --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 nIters 1 -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/refvol.fslregister.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/refvol.fslregister.nii... -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii --frame 0 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii... Mov determinant is -64 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/reg0.42864.dat --regheader --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat.fsl.mat0 --s freesurfer --noedit tkregister_tcl /Applications/Freesurfer5.3/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/reg0.42864.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 4.500; 0.000 0.000 1.000 -20.500; 0.000 -1.000 0.000 4.500; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 4.500; 0.000 0.000 1.000 -20.500; 0.000 -1.000 0.000 4.500; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.000 4.500; 0.000 0.000 1.000 -20.500; 0.000 -1.000 0.000 4.500; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -64, ref det = -1 Tue Dec 3 16:17:29 CST 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/fslmat0.trans.mat -schedule /usr/local/fsl/etc/flirtsch/xyztrans.sch -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat.fsl.mat0 Tue Dec 3 16:17:37 CST 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat.fsl.mat -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/fslregister/fslmat0.trans.mat -schedule /Applications/Freesurfer5.3/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat --fslreg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat.fsl.mat --noedit tkregister_tcl /Applications/Freesurfer5.3/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.002 -0.001 0.617; -0.001 0.006 -1.000 165.469; -0.002 1.000 0.006 -1.636; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -64, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 0.002 -0.001 0.888; 0.001 0.006 1.000 -21.816; 0.002 -1.000 0.006 -1.694; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.002 -0.001 0.888; 0.001 0.006 1.000 -21.816; 0.002 -1.000 0.006 -1.694; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.002 -0.001 0.888; 0.001 0.006 1.000 -21.816; 0.002 -1.000 0.006 -1.694; 0.000 0.000 0.000 1.000; Started at Tue Dec 3 16:17:24 CST 2013 Ended at Tue Dec 3 16:17:59 CST 2013 fslregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat --surf orig mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data cd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.init.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1386566591 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.002 -0.001 0.888; 0.001 0.006 1.000 -21.816; 0.002 -1.000 0.006 -1.694; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.058126 1 -25.0 -25.0 25.0 1.070769 2 -25.0 25.0 -25.0 1.094769 3 -25.0 25.0 25.0 1.003196 4 25.0 -25.0 -25.0 1.064117 5 25.0 -25.0 25.0 1.057870 6 25.0 25.0 -25.0 1.043813 7 25.0 25.0 25.0 1.048925 REL: 8 0.601534 8.441585 1.055198 rel = 0.570067 Initial costs ---------------- Number of surface hits 3271 WM Intensity 1.6364 +/- 0.5301 Ctx Intensity 1.7278 +/- 0.5770 Pct Contrast 4.7196 +/- 14.8174 Cost 0.6015 RelCost 0.5701 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9604 0.9604 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9188 0.9188 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9109 0.9109 0.0 4 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.0000 0.9035 0.9035 0.0 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9027 0.9027 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.8976 0.8976 0.0 10 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.0000 0.8742 0.8742 0.0 11 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.8691 0.8691 0.0 13 -4.0000 -4.0000 -4.0000 0.0000 0.0000 0.0000 0.8621 0.8621 0.0 30 -4.0000 -4.0000 0.0000 -4.0000 0.0000 -4.0000 0.8507 0.8507 0.0 31 -4.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7884 0.7884 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7723 0.7723 0.0 121 -4.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7134 0.7134 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6015 0.6015 0.0 Brute Force -------------------------- Min cost was 0.601534 Number of iterations 729 Search time 2.404000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 5 -0.618 0.000 0.000 0.000 0.000 0.000 0.5970164115 7 -0.731 0.000 0.000 0.000 0.000 0.000 0.5969179489 9 -0.834 0.000 0.000 0.000 0.000 0.000 0.5966004945 11 -0.828 0.000 0.000 0.000 0.000 0.000 0.5965987003 13 -0.829 0.000 0.000 0.000 0.000 0.000 0.5965986424 17 -0.829 -1.618 0.000 0.000 0.000 0.000 0.5855192692 18 -0.829 -1.059 0.000 0.000 0.000 0.000 0.5806409616 22 -0.829 -1.016 0.000 0.000 0.000 0.000 0.5806027870 23 -0.829 -1.013 0.000 0.000 0.000 0.000 0.5806006787 26 -0.829 -0.998 0.000 0.000 0.000 0.000 0.5805956852 29 -0.829 -0.996 0.000 0.000 0.000 0.000 0.5805956269 32 -0.829 -0.995 1.000 0.000 0.000 0.000 0.5628203757 37 -0.829 -0.995 1.269 0.000 0.000 0.000 0.5624921176 38 -0.829 -0.995 1.261 0.000 0.000 0.000 0.5624767064 39 -0.829 -0.995 1.185 0.000 0.000 0.000 0.5624425641 41 -0.829 -0.995 1.210 0.000 0.000 0.000 0.5624323668 43 -0.829 -0.995 1.215 0.000 0.000 0.000 0.5624317833 45 -0.829 -0.995 1.222 0.000 0.000 0.000 0.5624309231 47 -0.829 -0.995 1.223 0.000 0.000 0.000 0.5624307102 53 -0.829 -0.995 1.224 -0.618 0.000 0.000 0.5601730267 55 -0.829 -0.995 1.224 -0.643 0.000 0.000 0.5601716642 60 -0.829 -0.995 1.224 -0.650 0.000 0.000 0.5601713362 71 -0.829 -0.995 1.224 -0.652 -0.002 0.000 0.5601641500 73 -0.829 -0.995 1.224 -0.652 -0.060 0.000 0.5600242921 75 -0.829 -0.995 1.224 -0.652 -0.064 0.000 0.5600207879 76 -0.829 -0.995 1.224 -0.652 -0.069 0.000 0.5600183529 78 -0.829 -0.995 1.224 -0.652 -0.068 0.000 0.5600179690 85 -0.829 -0.995 1.224 -0.652 -0.068 0.382 0.5587977902 89 -0.829 -0.995 1.224 -0.652 -0.068 0.364 0.5587912628 91 -0.829 -0.995 1.224 -0.652 -0.068 0.360 0.5587906783 92 -0.829 -0.995 1.224 -0.652 -0.068 0.359 0.5587906748 103 -0.828 -0.995 1.224 -0.652 -0.068 0.359 0.5587885596 104 -0.819 -0.995 1.224 -0.652 -0.068 0.359 0.5587883219 106 -0.823 -0.995 1.224 -0.652 -0.068 0.359 0.5587882760 108 -0.822 -0.995 1.224 -0.652 -0.068 0.359 0.5587882494 118 -0.822 -1.002 1.224 -0.652 -0.068 0.359 0.5587858494 119 -0.822 -1.004 1.224 -0.652 -0.068 0.359 0.5587852130 120 -0.822 -1.009 1.224 -0.652 -0.068 0.359 0.5587844402 122 -0.822 -1.007 1.224 -0.652 -0.068 0.359 0.5587842410 125 -0.822 -1.007 2.224 -0.652 -0.068 0.359 0.5587452631 129 -0.822 -1.007 1.842 -0.652 -0.068 0.359 0.5551024379 140 -0.822 -1.007 1.840 -0.666 -0.068 0.359 0.5550872024 141 -0.822 -1.007 1.840 -0.674 -0.068 0.359 0.5550855394 144 -0.822 -1.007 1.840 -0.681 -0.068 0.359 0.5550853515 145 -0.822 -1.007 1.840 -0.678 -0.068 0.359 0.5550851873 147 -0.822 -1.007 1.840 -0.680 -0.068 0.359 0.5550851718 154 -0.822 -1.007 1.840 -0.680 -0.077 0.359 0.5550644688 155 -0.822 -1.007 1.840 -0.680 -0.121 0.359 0.5550244993 157 -0.822 -1.007 1.840 -0.680 -0.116 0.359 0.5550238942 158 -0.822 -1.007 1.840 -0.680 -0.117 0.359 0.5550238578 168 -0.822 -1.007 1.840 -0.680 -0.117 0.369 0.5550205925 170 -0.822 -1.007 1.840 -0.680 -0.117 0.367 0.5550202011 172 -0.822 -1.007 1.840 -0.680 -0.117 0.366 0.5550200228 193 -0.822 -0.929 1.840 -0.680 -0.117 0.366 0.5549217467 194 -0.822 -0.931 1.840 -0.680 -0.117 0.366 0.5549202394 195 -0.822 -0.947 1.840 -0.680 -0.117 0.366 0.5549043697 197 -0.822 -0.958 1.840 -0.680 -0.117 0.366 0.5548996563 198 -0.822 -0.959 1.840 -0.680 -0.117 0.366 0.5548993567 200 -0.822 -0.960 1.840 -0.680 -0.117 0.366 0.5548990106 201 -0.822 -0.961 1.840 -0.680 -0.117 0.366 0.5548988102 219 -0.822 -0.961 1.841 -0.642 -0.117 0.366 0.5548501882 222 -0.822 -0.961 1.841 -0.641 -0.117 0.366 0.5548499757 233 -0.822 -0.961 1.841 -0.641 -0.125 0.366 0.5548457143 234 -0.822 -0.961 1.841 -0.641 -0.126 0.366 0.5548455194 235 -0.822 -0.961 1.841 -0.641 -0.128 0.366 0.5548452787 246 -0.822 -0.961 1.841 -0.641 -0.128 0.348 0.5548187851 248 -0.822 -0.961 1.841 -0.641 -0.128 0.344 0.5548171435 249 -0.822 -0.961 1.841 -0.641 -0.128 0.343 0.5548170147 251 -0.822 -0.915 1.842 -0.602 -0.140 0.320 0.5547596370 257 -0.822 -0.933 1.842 -0.617 -0.136 0.329 0.5547536676 258 -0.822 -0.928 1.842 -0.613 -0.137 0.327 0.5547486244 259 -0.822 -0.926 1.842 -0.611 -0.137 0.325 0.5547471448 264 -0.822 -0.926 1.842 -0.611 -0.137 0.325 0.5547470041 273 -0.779 -0.926 1.842 -0.611 -0.137 0.325 0.5546992991 274 -0.776 -0.926 1.842 -0.611 -0.137 0.325 0.5546989957 275 -0.775 -0.926 1.842 -0.611 -0.137 0.325 0.5546989435 277 -0.772 -0.926 1.842 -0.611 -0.137 0.325 0.5546988755 278 -0.773 -0.926 1.842 -0.611 -0.137 0.325 0.5546987739 289 -0.773 -0.926 1.842 -0.611 -0.137 0.323 0.5546986663 301 -0.773 -0.926 1.839 -0.611 -0.137 0.323 0.5546972790 313 -0.773 -0.926 1.839 -0.618 -0.137 0.323 0.5546911658 315 -0.773 -0.926 1.839 -0.617 -0.137 0.323 0.5546911339 324 -0.773 -0.926 1.839 -0.617 -0.139 0.323 0.5546908922 328 -0.773 -0.880 1.840 -0.578 -0.151 0.300 0.5546435565 333 -0.773 -0.876 1.840 -0.575 -0.152 0.298 0.5546425330 334 -0.773 -0.867 1.841 -0.567 -0.154 0.294 0.5546383446 344 -0.773 -0.867 1.841 -0.567 -0.154 0.294 0.5546383419 345 -0.724 -0.773 1.840 -0.493 -0.180 0.244 0.5545056212 352 -0.724 -0.772 1.840 -0.493 -0.180 0.244 0.5545054642 355 -0.723 -0.771 1.840 -0.492 -0.181 0.243 0.5545051713 368 -0.706 -0.771 1.840 -0.492 -0.181 0.243 0.5544888824 369 -0.710 -0.771 1.840 -0.492 -0.181 0.243 0.5544856407 379 -0.710 -0.771 1.840 -0.492 -0.181 0.239 0.5544818330 380 -0.710 -0.771 1.840 -0.492 -0.181 0.232 0.5544782676 384 -0.710 -0.771 1.840 -0.492 -0.181 0.231 0.5544780129 393 -0.710 -0.771 1.849 -0.492 -0.181 0.231 0.5544776565 396 -0.710 -0.771 1.850 -0.492 -0.181 0.231 0.5544776454 404 -0.710 -0.771 1.850 -0.586 -0.181 0.231 0.5544175027 405 -0.710 -0.771 1.850 -0.553 -0.181 0.231 0.5543995980 406 -0.710 -0.771 1.850 -0.555 -0.181 0.231 0.5543991627 417 -0.710 -0.771 1.850 -0.555 -0.168 0.231 0.5543775420 426 -0.691 -0.734 1.850 -0.527 -0.176 0.212 0.5543422418 428 -0.695 -0.743 1.850 -0.534 -0.174 0.217 0.5543360673 430 -0.695 -0.742 1.850 -0.533 -0.174 0.216 0.5543359435 431 -0.695 -0.742 1.850 -0.533 -0.174 0.216 0.5543358089 433 -0.694 -0.741 1.850 -0.532 -0.175 0.216 0.5543357057 434 -0.694 -0.741 1.850 -0.532 -0.175 0.216 0.5543356544 435 -0.695 -0.741 1.850 -0.532 -0.175 0.216 0.5543355893 449 -0.698 -0.741 1.850 -0.532 -0.175 0.216 0.5543329092 462 -0.698 -0.741 1.850 -0.532 -0.175 0.217 0.5543324250 470 -0.698 -0.741 1.834 -0.532 -0.175 0.217 0.5543227607 472 -0.698 -0.741 1.835 -0.532 -0.175 0.217 0.5543224789 484 -0.698 -0.741 1.835 -0.540 -0.175 0.217 0.5543221838 486 -0.698 -0.741 1.835 -0.536 -0.175 0.217 0.5543221368 487 -0.698 -0.741 1.835 -0.537 -0.175 0.217 0.5543220572 497 -0.698 -0.741 1.835 -0.537 -0.167 0.217 0.5543178707 498 -0.698 -0.741 1.835 -0.537 -0.168 0.217 0.5543173005 499 -0.698 -0.741 1.835 -0.537 -0.169 0.217 0.5543168852 508 -0.695 -0.737 1.835 -0.534 -0.171 0.215 0.5543148558 510 -0.695 -0.737 1.835 -0.534 -0.171 0.215 0.5543148541 511 -0.695 -0.737 1.835 -0.534 -0.171 0.215 0.5543148190 512 -0.695 -0.736 1.835 -0.533 -0.171 0.214 0.5543146611 513 -0.695 -0.736 1.835 -0.533 -0.171 0.214 0.5543146449 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 1.056759 1 -25.0 -25.0 25.0 1.068203 2 -25.0 25.0 -25.0 1.066902 3 -25.0 25.0 25.0 1.017737 4 25.0 -25.0 -25.0 1.077399 5 25.0 -25.0 25.0 1.036088 6 25.0 25.0 -25.0 1.055432 7 25.0 25.0 25.0 1.044603 REL: 8 0.554315 8.423122 1.052890 rel = 0.52647 Number of iterations 5 Min cost was 0.554315 Number of FunctionCalls 517 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.762000 sec Parameters at optimum (transmm) -0.69511 -0.73634 1.83535 Parameters at optimum (rotdeg) -0.53353 -0.17069 0.21438 Final costs ---------------- Number of surface hits 3269 WM Intensity 1.6024 +/- 0.5265 Ctx Intensity 1.7041 +/- 0.5743 Pct Contrast 5.2900 +/- 14.8586 Cost 0.5543 RelCost 0.5701 Reg at min cost was 1.000 0.005 -0.004 0.279; 0.004 -0.003 1.000 -22.564; 0.005 -1.000 -0.003 0.348; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat, type = 14 Original Reg 1.000 0.002 -0.001 0.888; 0.001 0.006 1.000 -21.816; 0.002 -1.000 0.006 -1.694; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.003 0.004 0.609; -0.004 0.009 -0.000 0.748; -0.003 0.000 0.009 -2.041; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 2.151536 Computing change in rh position Surface RMS Diff (mm) 2.197935 2.750681 mri_segreg done mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data cd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/tmp.bbregister.42823/bbr.pass1.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1387051244 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.005 -0.004 0.279; 0.004 -0.003 1.000 -22.564; 0.005 -1.000 -0.003 0.348; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.032938 1 -25.0 -25.0 25.0 1.079007 2 -25.0 25.0 -25.0 1.065310 3 -25.0 25.0 25.0 1.029275 4 25.0 -25.0 -25.0 1.070631 5 25.0 -25.0 25.0 1.053422 6 25.0 25.0 -25.0 1.044274 7 25.0 25.0 25.0 1.072476 REL: 8 0.545630 8.447332 1.055917 rel = 0.516736 Initial costs ---------------- Number of surface hits 328151 WM Intensity 1.6097 +/- 0.5209 Ctx Intensity 1.7152 +/- 0.5761 Pct Contrast 5.5133 +/- 14.7149 Cost 0.5456 RelCost 0.5167 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.5565 0.5565 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.5559 0.5559 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.5557 0.5557 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.5556 0.5556 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.5552 0.5552 0.0 5 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.5551 0.5551 0.0 31 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.5548 0.5548 0.0 32 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.5547 0.5547 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5547 0.5547 0.0 274 0.0000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.5547 0.5547 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.5546 0.5546 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5543 0.5543 0.0 Brute Force -------------------------- Min cost was 0.554315 Number of iterations 729 Search time 2.410000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.209 0.000 0.000 0.000 0.000 0.000 0.5450800539 8 -0.203 0.000 0.000 0.000 0.000 0.000 0.5450776958 9 -0.193 0.000 0.000 0.000 0.000 0.000 0.5450761157 11 -0.190 0.000 0.000 0.000 0.000 0.000 0.5450760559 13 -0.191 0.000 0.000 0.000 0.000 0.000 0.5450760482 20 -0.191 -0.157 0.000 0.000 0.000 0.000 0.5446807096 21 -0.191 -0.152 0.000 0.000 0.000 0.000 0.5446748307 23 -0.191 -0.144 0.000 0.000 0.000 0.000 0.5446747116 25 -0.191 -0.139 0.000 0.000 0.000 0.000 0.5446738022 26 -0.191 -0.136 0.000 0.000 0.000 0.000 0.5446719388 35 -0.191 -0.136 -0.265 0.000 0.000 0.000 0.5438512446 50 -0.191 -0.136 -0.263 -0.072 0.000 0.000 0.5437909556 51 -0.191 -0.136 -0.263 -0.068 0.000 0.000 0.5437903492 52 -0.191 -0.136 -0.263 -0.066 0.000 0.000 0.5437902488 53 -0.191 -0.136 -0.263 -0.063 0.000 0.000 0.5437901539 54 -0.191 -0.136 -0.263 -0.062 0.000 0.000 0.5437901447 66 -0.191 -0.136 -0.263 -0.061 0.124 0.000 0.5434708356 67 -0.191 -0.136 -0.263 -0.061 0.131 0.000 0.5434700802 68 -0.191 -0.136 -0.263 -0.061 0.130 0.000 0.5434700716 76 -0.191 -0.136 -0.263 -0.061 0.130 0.017 0.5434602502 77 -0.191 -0.136 -0.263 -0.061 0.130 0.033 0.5434451160 79 -0.191 -0.136 -0.263 -0.061 0.130 0.084 0.5434448597 80 -0.191 -0.136 -0.263 -0.061 0.130 0.059 0.5434407854 81 -0.191 -0.136 -0.263 -0.061 0.130 0.060 0.5434407007 82 -0.191 -0.136 -0.263 -0.061 0.130 0.063 0.5434405417 83 -0.191 -0.136 -0.263 -0.061 0.130 0.071 0.5434387871 87 -0.191 -0.136 -0.263 -0.061 0.130 0.070 0.5434370458 88 -0.191 -0.136 -0.263 -0.061 0.130 0.069 0.5434365630 96 -0.247 -0.136 -0.263 -0.061 0.130 0.069 0.5433918126 97 -0.248 -0.136 -0.263 -0.061 0.130 0.069 0.5433917882 98 -0.250 -0.136 -0.263 -0.061 0.130 0.069 0.5433917817 108 -0.250 -0.177 -0.263 -0.061 0.130 0.069 0.5433616413 109 -0.250 -0.176 -0.263 -0.061 0.130 0.069 0.5433612112 110 -0.250 -0.169 -0.263 -0.061 0.130 0.069 0.5433575479 122 -0.250 -0.169 -0.277 -0.061 0.130 0.069 0.5433546078 150 -0.250 -0.169 -0.279 -0.061 0.133 0.069 0.5433544973 151 -0.250 -0.169 -0.279 -0.061 0.132 0.069 0.5433544966 162 -0.250 -0.169 -0.279 -0.061 0.132 0.063 0.5433541045 172 -0.247 -0.169 -0.279 -0.061 0.132 0.065 0.5433540754 174 -0.248 -0.169 -0.279 -0.061 0.132 0.065 0.5433540476 184 -0.248 -0.168 -0.279 -0.061 0.132 0.065 0.5433540285 192 -0.248 -0.168 -0.277 -0.061 0.132 0.065 0.5433539382 193 -0.248 -0.168 -0.276 -0.061 0.132 0.065 0.5433539289 Powell done niters = 3 Computing relative cost 0 -25.0 -25.0 -25.0 1.032794 1 -25.0 -25.0 25.0 1.081433 2 -25.0 25.0 -25.0 1.065853 3 -25.0 25.0 25.0 1.029252 4 25.0 -25.0 -25.0 1.071064 5 25.0 -25.0 25.0 1.054689 6 25.0 25.0 -25.0 1.044184 7 25.0 25.0 25.0 1.072179 REL: 8 0.543354 8.451448 1.056431 rel = 0.51433 Number of iterations 3 Min cost was 0.543354 Number of FunctionCalls 280 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 49.887000 sec Parameters at optimum (transmm) -0.24664 -0.16793 -0.27704 Parameters at optimum (rotdeg) -0.06039 0.13199 0.06356 Final costs ---------------- Number of surface hits 328075 WM Intensity 1.6095 +/- 0.5207 Ctx Intensity 1.7162 +/- 0.5756 Pct Contrast 5.5892 +/- 14.7256 Cost 0.5434 RelCost 0.5167 Reg at min cost was 1.000 0.003 -0.005 0.058; 0.005 -0.004 1.000 -22.731; 0.003 -1.000 -0.004 0.094; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.005 -0.004 0.279; 0.004 -0.003 1.000 -22.564; 0.005 -1.000 -0.003 0.348; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.002 0.001 0.221; -0.001 0.001 0.000 0.167; 0.002 0.000 0.001 0.254; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.348797 Computing change in rh position Surface RMS Diff (mm) 0.388142 0.589196 mri_segreg done tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /Applications/Freesurfer5.3/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.003 -0.005 0.058; 0.005 -0.004 1.000 -22.731; 0.003 -1.000 -0.004 0.094; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.003 -0.005 0.058; 0.005 -0.004 1.000 -22.731; 0.003 -1.000 -0.004 0.094; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.003 -0.005 0.058; 0.005 -0.004 1.000 -22.731; 0.003 -1.000 -0.004 0.094; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -64, ref det = -1 Cleaning up Started at Tue Dec 3 16:17:24 CST 2013 Ended at Tue Dec 3 16:19:29 CST 2013 BBR-Run-Time-Sec 125 bbregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2anatorig.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Tue Dec 3 16:19:29 CST 2013 flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_mni.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2anat.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2mni.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Dec 3 16:21:57 CST 2013 mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 609824 values in range Counting number of voxels Found 609824 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 644511 values in range Counting number of voxels Found 644511 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 25787 values in range Counting number of voxels Found 25787 voxels in final mask mri_binarize done mri_aparc2aseg --s freesurfer --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data subject freesurfer outvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/lh.white Reading lh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/lh.pial Loading lh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/rh.white Reading rh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/surf/rh.pial Loading rh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/ribbon.mgz Loading filled from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1127157 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 5 clusters 0 k 1.000000 1 k 1.000000 2 k 5.000000 3 k 5.000000 4 k 997.000000 Fixing Parahip RH WM Found 14 clusters 0 k 948.000000 1 k 1.000000 2 k 2.000000 3 k 1.000000 4 k 1.000000 5 k 2.000000 6 k 4.000000 7 k 2.000000 8 k 8.000000 9 k 2.000000 10 k 1.000000 11 k 1.000000 12 k 2.000000 13 k 1.000000 Writing output aseg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 549949 values in range Counting number of voxels Found 549949 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 916223 values in range Counting number of voxels Found 916223 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 23608 values in range Counting number of voxels Found 23608 voxels in final mask mri_binarize done fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz -add /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz -mul /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data/freesurfer/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anat/White-Matter.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/White-Matter.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/lowb.nii.gz -out 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Tue Dec 3 16:29:52 CST 2013 dtifit -k 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processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/mni/dtifit_L1.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Tue Dec 3 16:30:35 CST 2013 /Applications/Freesurfer5.3/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.40949.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_FA.nii.gz --cptdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat --ncpts 5 --trunc cwd /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data cmdline /Applications/Freesurfer5.3/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.40949.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/dtifit_FA.nii.gz --cptdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dlabel/diff --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1064/data//freesurfer/dmri/xfms/mni2diff.flt.mat --ncpts 5 --trunc sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni Output directory in test subject's space: /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff Output base: lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt Training subject directory list: /private/tmp/subj23.freesurfer.40949.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dmri/xfms/mni2diff.flt.mat Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dmri/dtifit_FA.nii.gz Loading affine registration from /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dmri/xfms/mni2diff.flt.mat Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 409 streamlines for straying off mask INFO: Rejected 65 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 5544 total streamlines (min/mean/max length: 66/102/139) Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2794 non-truncated streamlines (min/mean/max length: 67/103/139) INFO: Center of mass of start points: (97+/-4, 96+/-7, 35+/-12) INFO: Center of mass of midpoints: (112+/-3, 109+/-3, 75+/-7) INFO: Center of mass of end points: (114+/-9, 106+/-9, 141+/-7) INFO: Split streamlines into 28 segments Computing path histograms INFO: Total streamline volume is 37247 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0298019 INFO: Points where local peeks in curvature occur are 100 103 52 (curv = 0.0606807) 110 110 68 (curv = 0.0518677) 114 110 85 (curv = 0.0314797) 114 110 95 (curv = 0.036647) 116 109 102 (curv = 0.0553638) 113 104 119 (curv = 0.0439312) INFO: Intermediate dominant points are 100 98 34 100 103 52 110 110 68 116 109 102 114 105 142 INFO: Final dominant points are 100 98 34 100 103 52 110 110 68 116 109 102 114 105 142 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 98 34 104 107 60 114 110 86 114 106 113 114 105 142 INFO: Distances between consecutive points are 28 28 27 29 INFO: Selected control points in test subject's space are 34 31 0 35 32 7 37 31 13 37 29 19 37 27 26 INFO: Distances between consecutive points in test subject's space are 7 6 6 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0309587 INFO: Points where local peeks in curvature occur are 100 102 51 (curv = 0.0600715) 108 109 66 (curv = 0.0373862) 112 110 76 (curv = 0.0439161) 114 109 86 (curv = 0.0403344) 116 108 102 (curv = 0.0417276) 115 107 110 (curv = 0.0331533) 115 105 115 (curv = 0.043518) 112 104 123 (curv = 0.0365496) INFO: Intermediate dominant points are 100 98 36 100 102 51 112 110 76 115 105 115 114 105 142 INFO: Final dominant points are 100 98 36 100 102 51 112 110 76 115 105 115 114 105 142 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 98 36 105 107 61 114 109 87 115 106 113 114 105 142 INFO: Distances between consecutive points are 27 28 26 29 INFO: Selected control points in test subject's space are 34 31 0 35 32 7 37 31 13 38 29 19 37 27 26 INFO: Distances between consecutive points in test subject's space are 7 6 6 7 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 101 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0252129 INFO: Points where local peeks in curvature occur are 113 111 80 (curv = 0.0290488) 115 111 88 (curv = 0.0266448) 115 112 94 (curv = 0.0527879) 115 110 103 (curv = 0.0335365) 114 106 113 (curv = 0.0263206) 113 105 118 (curv = 0.0260116) 111 105 127 (curv = 0.0550552) INFO: Intermediate dominant points are 99 101 40 113 111 80 115 112 94 111 105 127 107 105 144 INFO: Final dominant points are 99 101 40 113 111 80 115 112 94 111 105 127 107 105 144 INFO: Selected control points are 99 101 40 112 112 79 115 111 95 111 103 125 107 105 144 INFO: Distances between consecutive points are 43 16 31 20 INFO: Selected control points in test subject's space are 34 31 2 37 32 11 38 31 15 37 27 22 36 27 26 INFO: Distances between consecutive points in test subject's space are 10 4 8 4 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 77.104 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 403 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 14 streamlines as length outliers INFO: Have 5557 total streamlines (min/mean/max length: 60/101/142) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2851 non-truncated streamlines (min/mean/max length: 63/101/140) INFO: Center of mass of start points: (82+/-3, 96+/-6, 38+/-14) INFO: Center of mass of midpoints: (67+/-4, 110+/-3, 77+/-7) INFO: Center of mass of end points: (66+/-8, 104+/-10, 141+/-7) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 41820 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.023191 INFO: Points where local peeks in curvature occur are 78 103 51 (curv = 0.0440479) 69 110 69 (curv = 0.0345754) 65 110 83 (curv = 0.0493142) 66 109 91 (curv = 0.0318781) 65 109 96 (curv = 0.0254478) 66 106 112 (curv = 0.0278607) INFO: Intermediate dominant points are 79 97 36 78 103 51 65 110 83 66 106 120 66 108 146 INFO: Final dominant points are 79 97 36 78 103 51 65 110 83 68 105 132 66 108 146 WARN: Defaulting to equidistant control points INFO: Selected control points are 79 97 36 72 108 62 65 109 88 66 106 117 66 108 146 INFO: Distances between consecutive points are 29 27 29 29 INFO: Selected control points in test subject's space are 29 30 0 28 32 7 26 31 13 26 29 20 26 28 27 INFO: Distances between consecutive points in test subject's space are 7 6 7 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0319302 INFO: Points where local peeks in curvature occur are 78 103 50 (curv = 0.0700224) 73 109 62 (curv = 0.0339022) 66 111 73 (curv = 0.0381558) 63 110 86 (curv = 0.0342974) 63 109 95 (curv = 0.0358247) 65 109 102 (curv = 0.0518446) 65 107 119 (curv = 0.0564754) 68 104 128 (curv = 0.0553504) INFO: Intermediate dominant points are 80 101 34 78 103 50 65 109 102 65 107 119 68 103 143 INFO: Final dominant points are 80 101 34 78 103 50 65 109 102 65 107 119 68 103 143 WARN: Defaulting to equidistant control points INFO: Selected control points are 80 101 34 74 108 60 63 110 88 65 108 115 68 103 143 INFO: Distances between consecutive points are 28 30 27 29 INFO: Selected control points in test subject's space are 29 31 0 28 32 7 26 31 13 26 29 20 27 27 26 INFO: Distances between consecutive points in test subject's space are 7 6 7 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0208114 INFO: Points where local peeks in curvature occur are 73 108 60 (curv = 0.033535) 68 109 70 (curv = 0.0283878) 65 109 79 (curv = 0.0451501) 65 109 90 (curv = 0.0310589) 66 104 119 (curv = 0.0494196) 67 105 126 (curv = 0.0245869) INFO: Intermediate dominant points are 79 97 36 73 108 60 65 109 79 66 104 119 66 108 147 INFO: Final dominant points are 79 97 36 73 108 60 65 109 79 66 104 119 66 108 147 WARN: Defaulting to equidistant control points INFO: Selected control points are 79 97 36 72 108 62 65 109 91 66 104 119 66 108 147 INFO: Distances between consecutive points are 29 30 28 28 INFO: Selected control points in test subject's space are 29 30 0 28 32 7 26 31 14 26 28 20 26 28 27 INFO: Distances between consecutive points in test subject's space are 7 7 7 7 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.021969 INFO: Points where local peeks in curvature occur are 78 103 48 (curv = 0.0446408) 71 109 63 (curv = 0.028025) 67 110 73 (curv = 0.0272399) 65 110 82 (curv = 0.0424711) 66 110 91 (curv = 0.0453393) 65 108 105 (curv = 0.0229702) 66 107 110 (curv = 0.02922) 67 106 121 (curv = 0.0269788) INFO: Intermediate dominant points are 79 98 33 78 103 48 66 110 91 67 106 121 67 108 146 INFO: Final dominant points are 79 98 33 78 103 48 66 110 91 67 106 121 67 108 146 WARN: Defaulting to equidistant control points INFO: Selected control points are 79 98 33 73 108 59 65 110 87 66 107 115 67 108 146 INFO: Distances between consecutive points are 28 29 28 31 INFO: Selected control points in test subject's space are 29 31 0 28 32 6 26 31 13 26 29 20 27 28 27 INFO: Distances between consecutive points in test subject's space are 6 7 7 7 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 105 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0242034 INFO: Points where local peeks in curvature occur are 70 110 66 (curv = 0.0268451) 65 111 73 (curv = 0.0607175) 63 111 81 (curv = 0.0262439) 61 112 101 (curv = 0.0511364) 64 107 118 (curv = 0.036767) 64 105 125 (curv = 0.0244208) INFO: Intermediate dominant points are 81 97 35 65 111 73 61 112 101 64 107 118 63 103 144 INFO: Final dominant points are 81 97 35 65 111 73 61 112 101 64 107 118 63 103 144 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 81 97 35 72 108 62 63 112 89 64 107 117 63 103 144 INFO: Distances between consecutive points are 31 29 28 27 INFO: Selected control points in test subject's space are 30 30 0 28 32 7 26 31 14 26 29 20 26 27 26 INFO: Distances between consecutive points in test subject's space are 8 7 6 6 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.023694 INFO: Points where local peeks in curvature occur are 73 107 58 (curv = 0.028028) 65 111 72 (curv = 0.0487972) 63 112 81 (curv = 0.0318231) 62 113 94 (curv = 0.0472562) 61 112 103 (curv = 0.0489299) 65 105 125 (curv = 0.0258467) INFO: Intermediate dominant points are 83 97 35 65 111 72 61 112 103 65 105 125 62 104 146 INFO: Final dominant points are 83 97 35 65 111 72 61 112 103 65 105 125 62 104 146 WARN: Defaulting to equidistant control points INFO: Selected control points are 83 97 35 72 109 61 63 113 90 64 108 117 62 104 146 INFO: Distances between consecutive points are 31 31 27 29 INFO: Selected control points in test subject's space are 30 30 0 28 32 7 26 32 14 26 29 20 25 27 27 INFO: Distances between consecutive points in test subject's space are 8 7 7 7 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0343757 INFO: Points where local peeks in curvature occur are 66 113 75 (curv = 0.0536097) 61 113 97 (curv = 0.0614933) 60 111 104 (curv = 0.0887596) 63 106 111 (curv = 0.0552792) 65 105 120 (curv = 0.0494818) 65 106 122 (curv = 0.0494073) 63 105 131 (curv = 0.0394305) INFO: Intermediate dominant points are 82 97 39 66 113 75 60 111 104 65 105 120 63 103 144 INFO: Final dominant points are 82 97 39 66 113 75 60 111 104 65 105 120 63 103 144 INFO: Selected control points are 82 97 39 67 114 75 61 110 103 65 105 120 63 103 144 INFO: Distances between consecutive points are 43 29 18 24 INFO: Selected control points in test subject's space are 30 30 1 26 33 10 25 30 17 26 28 21 26 27 26 INFO: Distances between consecutive points in test subject's space are 10 8 5 5 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 79.816 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 64 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 14 streamlines as length outliers INFO: Have 2261 total streamlines (min/mean/max length: 50/94/144) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1099 non-truncated streamlines (min/mean/max length: 59/98/134) INFO: Center of mass of start points: (136+/-8, 135+/-6, 41+/-9) INFO: Center of mass of midpoints: (134+/-4, 100+/-3, 60+/-4) INFO: Center of mass of end points: (114+/-11, 42+/-11, 72+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 30551 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0263584 INFO: Points where local peeks in curvature occur are 132 112 56 (curv = 0.0595108) 135 97 61 (curv = 0.04252) 135 94 62 (curv = 0.0412721) 119 50 72 (curv = 0.0743075) INFO: Intermediate dominant points are 130 132 33 132 112 56 135 97 61 119 50 72 105 32 60 INFO: Final dominant points are 130 132 33 132 112 56 135 97 61 119 50 72 105 32 60 WARN: Defaulting to equidistant control points INFO: Selected control points are 130 132 33 132 111 57 132 86 63 123 61 70 105 32 60 INFO: Distances between consecutive points are 32 26 27 36 INFO: Selected control points in test subject's space are 41 39 1 41 33 6 41 26 6 39 20 7 35 13 4 INFO: Distances between consecutive points in test subject's space are 8 7 6 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0313578 INFO: Points where local peeks in curvature occur are 136 118 52 (curv = 0.0647879) 137 110 55 (curv = 0.0540317) 134 93 63 (curv = 0.0413169) 134 83 64 (curv = 0.052402) 129 71 68 (curv = 0.0346476) 117 53 70 (curv = 0.0377035) INFO: Intermediate dominant points are 144 132 38 136 118 52 134 83 64 117 53 70 117 38 61 INFO: Final dominant points are 144 132 38 136 118 52 134 83 64 117 53 70 117 38 61 INFO: Selected control points are 144 132 38 135 116 53 134 83 65 117 54 70 117 38 61 INFO: Distances between consecutive points are 24 35 34 18 INFO: Selected control points in test subject's space are 44 39 2 42 34 5 42 25 7 38 18 7 38 14 4 INFO: Distances between consecutive points in test subject's space are 6 9 8 5 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 23.107 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 93 streamlines for straying off mask INFO: Rejected 14 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1160 total streamlines (min/mean/max length: 55/94/128) Processing pathway 4 of 18... Matching streamline ends INFO: Have 548 non-truncated streamlines (min/mean/max length: 58/101/131) INFO: Center of mass of start points: (48+/-8, 139+/-7, 39+/-9) INFO: Center of mass of midpoints: (46+/-4, 104+/-3, 57+/-4) INFO: Center of mass of end points: (65+/-11, 44+/-12, 74+/-12) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 21431 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0325956 INFO: Points where local peeks in curvature occur are 45 116 49 (curv = 0.0420013) 47 105 57 (curv = 0.066783) 46 94 59 (curv = 0.0645295) 49 82 66 (curv = 0.0349357) 59 66 73 (curv = 0.0560912) 63 55 74 (curv = 0.0424856) INFO: Intermediate dominant points are 40 135 38 47 105 57 49 82 66 59 66 73 70 42 75 INFO: Final dominant points are 40 135 38 47 105 57 49 82 66 59 66 73 70 42 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 135 38 46 114 51 46 90 61 57 68 73 70 42 75 INFO: Distances between consecutive points are 25 26 27 29 INFO: Selected control points in test subject's space are 20 40 2 22 34 5 22 27 6 24 21 8 27 15 8 INFO: Distances between consecutive points in test subject's space are 7 7 7 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0310096 INFO: Points where local peeks in curvature occur are 45 116 48 (curv = 0.0528101) 47 108 55 (curv = 0.0641702) 47 105 57 (curv = 0.0698053) 46 93 59 (curv = 0.0573395) 59 65 74 (curv = 0.041782) INFO: Intermediate dominant points are 41 134 36 47 105 57 47 91 60 59 65 74 70 47 75 INFO: Final dominant points are 41 134 36 47 105 57 53 76 69 59 65 74 70 47 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 134 36 46 112 52 47 91 60 57 69 72 70 47 75 INFO: Distances between consecutive points are 28 22 27 26 INFO: Selected control points in test subject's space are 20 40 2 22 33 5 22 28 6 24 22 8 27 16 8 INFO: Distances between consecutive points in test subject's space are 8 5 7 7 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 101 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0218346 INFO: Points where local peeks in curvature occur are 48 129 42 (curv = 0.0554792) 47 121 45 (curv = 0.0425699) 46 116 48 (curv = 0.0359909) 45 111 50 (curv = 0.0279989) 45 100 55 (curv = 0.0431086) 53 77 66 (curv = 0.025034) 57 63 69 (curv = 0.0227801) 57 60 70 (curv = 0.0240132) INFO: Intermediate dominant points are 50 143 32 48 129 42 45 100 55 53 77 66 60 46 73 INFO: Final dominant points are 50 143 32 48 129 42 45 100 55 53 77 66 60 46 73 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 143 32 47 119 46 47 95 57 55 71 67 60 46 73 INFO: Distances between consecutive points are 28 26 27 26 INFO: Selected control points in test subject's space are 23 42 1 22 35 4 22 29 5 24 22 7 25 16 7 INFO: Distances between consecutive points in test subject's space are 8 6 8 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0200609 INFO: Points where local peeks in curvature occur are 47 128 43 (curv = 0.0588485) 47 122 44 (curv = 0.0367042) 45 111 50 (curv = 0.0259797) 45 101 55 (curv = 0.0354421) 46 95 57 (curv = 0.0240846) 53 78 65 (curv = 0.0203603) 57 62 69 (curv = 0.0271403) INFO: Intermediate dominant points are 50 143 32 47 128 43 45 101 55 57 62 69 60 46 73 INFO: Final dominant points are 50 143 32 47 128 43 45 101 55 57 62 69 60 46 73 INFO: Selected control points are 50 143 32 48 127 43 46 100 55 57 64 70 60 46 73 INFO: Distances between consecutive points are 20 30 41 18 INFO: Selected control points in test subject's space are 23 42 1 22 37 3 22 30 5 24 20 7 25 16 7 INFO: Distances between consecutive points in test subject's space are 5 7 10 4 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 17.93 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 620 streamlines for straying off mask INFO: Rejected 10 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3659 total streamlines (min/mean/max length: 11/63/102) Processing pathway 5 of 18... Matching streamline ends INFO: Have 2553 non-truncated streamlines (min/mean/max length: 19/61/100) INFO: Center of mass of start points: (128+/-6, 142+/-4, 39+/-5) INFO: Center of mass of midpoints: (125+/-2, 124+/-2, 54+/-3) INFO: Center of mass of end points: (111+/-11, 156+/-16, 57+/-5) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 20902 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0662187 INFO: Points where local peeks in curvature occur are 132 128 43 (curv = 0.110766) 128 123 51 (curv = 0.123082) 120 135 61 (curv = 0.076942) INFO: Intermediate dominant points are 133 142 42 132 128 43 128 123 51 120 135 61 107 156 56 INFO: Final dominant points are 133 142 42 132 128 43 128 123 51 120 135 61 107 156 56 INFO: Selected control points are 133 142 42 132 128 42 128 123 52 119 135 61 107 156 56 INFO: Distances between consecutive points are 14 12 17 25 INFO: Selected control points in test subject's space are 42 41 4 41 38 3 40 36 5 38 38 8 36 44 7 INFO: Distances between consecutive points in test subject's space are 3 3 4 6 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 29.237 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 324 streamlines for straying off mask INFO: Rejected 85 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5254 total streamlines (min/mean/max length: 9/66/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3568 non-truncated streamlines (min/mean/max length: 9/65/104) INFO: Center of mass of start points: (53+/-6, 144+/-4, 40+/-6) INFO: Center of mass of midpoints: (55+/-2, 126+/-3, 55+/-3) INFO: Center of mass of end points: (72+/-9, 163+/-16, 56+/-5) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 24174 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 74 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0596405 INFO: Points where local peeks in curvature occur are 53 125 51 (curv = 0.125785) 58 130 61 (curv = 0.099242) 75 155 61 (curv = 0.0683882) INFO: Intermediate dominant points are 54 143 38 53 125 51 61 136 62 75 155 61 77 173 56 INFO: Final dominant points are 54 143 38 53 125 51 70 145 60 75 155 61 77 173 56 INFO: Selected control points are 54 143 38 52 124 51 69 144 63 75 155 60 77 173 56 INFO: Distances between consecutive points are 23 29 13 19 INFO: Selected control points in test subject's space are 23 42 3 23 36 5 27 41 9 28 44 8 29 48 8 INFO: Distances between consecutive points in test subject's space are 6 8 3 4 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 48.252 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 1132 streamlines for straying off mask INFO: Rejected 103 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 6228 total streamlines (min/mean/max length: 82/133/167) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4033 non-truncated streamlines (min/mean/max length: 82/133/170) INFO: Center of mass of start points: (103+/-6, 38+/-10, 102+/-15) INFO: Center of mass of midpoints: (90+/-2, 89+/-3, 83+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 101+/-17) INFO: Split streamlines into 34 segments Computing path histograms INFO: Total streamline volume is 58707 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 19 INFO: Minimum allowable curvature at a dominant point is 0.0500624 INFO: Points where local peeks in curvature occur are 117 53 85 (curv = 0.0972612) 91 90 83 (curv = 0.090225) 87 90 84 (curv = 0.0804694) 61 61 86 (curv = 0.0737447) 62 54 85 (curv = 0.0865248) INFO: Intermediate dominant points are 99 37 108 117 53 85 91 90 83 62 54 85 72 36 112 INFO: Final dominant points are 99 37 108 117 53 85 91 90 83 62 54 85 72 36 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 108 117 58 86 89 90 83 61 61 86 72 36 112 INFO: Distances between consecutive points are 35 43 40 38 INFO: Selected control points in test subject's space are 34 12 15 38 18 11 32 26 11 25 19 11 28 11 16 INFO: Distances between consecutive points in test subject's space are 8 10 10 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 19 INFO: Minimum allowable curvature at a dominant point is 0.0478257 INFO: Points where local peeks in curvature occur are 110 44 85 (curv = 0.0646653) 116 54 85 (curv = 0.0544759) 117 62 89 (curv = 0.0975686) 105 83 83 (curv = 0.0686881) 87 90 82 (curv = 0.0637029) 63 76 90 (curv = 0.0496624) 60 67 92 (curv = 0.0658171) 59 54 87 (curv = 0.0813967) INFO: Intermediate dominant points are 97 34 109 117 62 89 87 90 82 59 54 87 77 38 103 INFO: Final dominant points are 97 34 109 117 62 89 87 90 82 59 54 87 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 97 34 109 117 57 87 92 89 82 60 67 92 77 38 103 INFO: Distances between consecutive points are 38 41 40 35 INFO: Selected control points in test subject's space are 33 11 15 38 18 11 32 26 11 25 20 13 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 19 INFO: Minimum allowable curvature at a dominant point is 0.0486933 INFO: Points where local peeks in curvature occur are 111 45 85 (curv = 0.0687697) 116 53 85 (curv = 0.0576446) 117 63 89 (curv = 0.0957192) 84 90 82 (curv = 0.0544233) 62 74 91 (curv = 0.0552523) 60 70 92 (curv = 0.0592204) 58 56 87 (curv = 0.0898221) INFO: Intermediate dominant points are 97 34 109 117 63 89 91 89 82 58 56 87 77 38 103 INFO: Final dominant points are 97 34 109 117 63 89 63 75 91 58 56 87 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 97 34 109 117 58 87 93 89 82 60 68 92 77 38 103 INFO: Distances between consecutive points are 38 40 40 36 INFO: Selected control points in test subject's space are 33 11 15 38 18 11 32 26 11 25 20 13 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0486146 INFO: Points where local peeks in curvature occur are 111 42 81 (curv = 0.111076) 118 55 85 (curv = 0.0887641) 98 88 84 (curv = 0.0533934) 89 91 84 (curv = 0.100722) 60 62 86 (curv = 0.0774565) 61 55 86 (curv = 0.0794986) INFO: Intermediate dominant points are 106 32 102 111 42 81 89 91 84 61 55 86 71 38 111 INFO: Final dominant points are 106 32 102 111 42 81 89 91 84 61 55 86 71 38 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 32 102 118 57 85 92 90 83 60 64 87 71 38 111 INFO: Distances between consecutive points are 33 42 41 37 INFO: Selected control points in test subject's space are 35 11 14 38 18 10 32 26 11 25 20 11 27 12 16 INFO: Distances between consecutive points in test subject's space are 9 10 9 10 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 19 INFO: Minimum allowable curvature at a dominant point is 0.0488179 INFO: Points where local peeks in curvature occur are 107 42 86 (curv = 0.0711738) 114 49 85 (curv = 0.0633894) 117 55 86 (curv = 0.06164) 117 63 90 (curv = 0.105055) 86 90 82 (curv = 0.0575873) 59 65 92 (curv = 0.0772104) 59 54 87 (curv = 0.0895259) INFO: Intermediate dominant points are 99 34 105 117 63 90 89 90 82 59 54 87 77 38 103 INFO: Final dominant points are 99 34 105 117 63 90 63 74 91 59 54 87 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 105 117 60 89 91 89 82 59 66 92 77 38 103 INFO: Distances between consecutive points are 35 40 41 35 INFO: Selected control points in test subject's space are 34 11 14 38 18 12 32 26 11 25 20 13 29 12 14 INFO: Distances between consecutive points in test subject's space are 8 10 9 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0503628 INFO: Points where local peeks in curvature occur are 113 48 88 (curv = 0.0969396) 119 62 89 (curv = 0.120614) 104 85 84 (curv = 0.056146) 94 89 83 (curv = 0.062473) 83 88 84 (curv = 0.077318) 61 63 87 (curv = 0.106167) INFO: Intermediate dominant points are 105 40 112 119 62 89 83 88 84 61 63 87 71 36 96 INFO: Final dominant points are 105 40 112 119 62 89 83 88 84 61 63 87 71 36 96 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 40 112 118 58 88 95 89 83 63 71 87 71 36 96 INFO: Distances between consecutive points are 33 39 37 37 INFO: Selected control points in test subject's space are 35 12 16 38 18 11 33 26 11 26 21 12 27 12 12 INFO: Distances between consecutive points in test subject's space are 8 9 9 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 19 INFO: Minimum allowable curvature at a dominant point is 0.0501099 INFO: Points where local peeks in curvature occur are 108 38 83 (curv = 0.096427) 113 43 81 (curv = 0.0884892) 118 54 84 (curv = 0.0781326) 114 66 87 (curv = 0.0525264) 95 90 84 (curv = 0.0640589) 88 91 84 (curv = 0.0861883) 59 61 86 (curv = 0.0825664) 66 48 88 (curv = 0.0733782) INFO: Intermediate dominant points are 106 31 102 108 38 83 88 91 84 59 61 86 71 38 111 INFO: Final dominant points are 106 31 102 108 38 83 88 91 84 59 61 86 71 38 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 31 102 118 54 84 95 90 84 60 63 86 71 38 111 INFO: Distances between consecutive points are 32 43 44 37 INFO: Selected control points in test subject's space are 35 11 14 38 17 10 33 26 12 25 19 11 27 12 16 INFO: Distances between consecutive points in test subject's space are 8 10 11 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0502585 INFO: Points where local peeks in curvature occur are 113 47 88 (curv = 0.121193) 119 65 89 (curv = 0.10528) 109 79 84 (curv = 0.0509001) 90 89 83 (curv = 0.0701111) 61 66 87 (curv = 0.0894499) INFO: Intermediate dominant points are 105 40 113 113 47 88 90 89 83 61 66 87 71 36 96 INFO: Final dominant points are 105 40 113 113 47 88 90 89 83 61 66 87 71 36 96 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 40 113 117 56 88 97 88 84 63 71 87 71 36 96 INFO: Distances between consecutive points are 32 38 38 37 INFO: Selected control points in test subject's space are 35 12 16 38 18 11 33 26 11 26 21 12 27 12 12 INFO: Distances between consecutive points in test subject's space are 8 9 9 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0481475 INFO: Points where local peeks in curvature occur are 118 53 85 (curv = 0.0842476) 118 58 85 (curv = 0.0782189) 97 89 84 (curv = 0.0573418) 89 91 84 (curv = 0.0969745) 59 62 86 (curv = 0.0804947) 61 53 85 (curv = 0.085818) INFO: Intermediate dominant points are 103 33 99 118 53 85 89 91 84 61 53 85 70 37 106 INFO: Final dominant points are 103 33 99 118 53 85 89 91 84 61 53 85 70 37 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 33 99 118 59 85 91 91 84 60 65 86 70 37 106 INFO: Distances between consecutive points are 33 42 41 36 INFO: Selected control points in test subject's space are 35 11 13 38 18 11 32 26 12 25 20 11 27 12 15 INFO: Distances between consecutive points in test subject's space are 8 10 9 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0447942 INFO: Points where local peeks in curvature occur are 111 45 86 (curv = 0.0463713) 118 62 86 (curv = 0.0870752) 115 72 84 (curv = 0.0457441) 106 82 82 (curv = 0.0490918) 97 86 82 (curv = 0.0514241) 94 86 81 (curv = 0.0587916) 83 87 82 (curv = 0.0812851) 71 81 83 (curv = 0.0508562) 62 65 85 (curv = 0.0706621) 68 48 88 (curv = 0.0477957) INFO: Intermediate dominant points are 98 36 108 118 62 86 83 87 82 62 65 85 76 34 107 INFO: Final dominant points are 98 36 108 118 62 86 83 87 82 62 65 85 76 34 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 108 118 58 85 93 86 81 63 68 84 76 34 107 INFO: Distances between consecutive points are 38 38 35 43 INFO: Selected control points in test subject's space are 34 12 15 38 18 11 32 25 11 26 21 11 29 11 15 INFO: Distances between consecutive points in test subject's space are 8 9 7 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0462762 INFO: Points where local peeks in curvature occur are 113 48 87 (curv = 0.10135) 119 63 87 (curv = 0.126451) 94 90 83 (curv = 0.0519547) 82 89 83 (curv = 0.0570975) 78 87 84 (curv = 0.0567392) 62 65 87 (curv = 0.0995334) INFO: Intermediate dominant points are 105 40 112 119 63 87 82 89 83 62 65 87 72 36 97 INFO: Final dominant points are 105 40 112 119 63 87 82 89 83 62 65 87 72 36 97 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 40 112 118 60 87 94 90 83 63 69 87 72 36 97 INFO: Distances between consecutive points are 35 39 38 36 INFO: Selected control points in test subject's space are 35 12 16 38 19 11 33 26 11 26 21 11 28 12 13 INFO: Distances between consecutive points in test subject's space are 9 9 9 9 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0461451 INFO: Points where local peeks in curvature occur are 118 56 85 (curv = 0.0904266) 95 90 84 (curv = 0.0880839) 86 90 84 (curv = 0.0690323) 63 69 87 (curv = 0.0515111) 60 59 86 (curv = 0.0973251) 64 50 85 (curv = 0.0816989) INFO: Intermediate dominant points are 102 33 95 118 56 85 95 90 84 60 59 86 72 36 112 INFO: Final dominant points are 102 33 95 118 56 85 95 90 84 60 59 86 72 36 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 102 33 95 114 66 86 84 89 84 61 56 85 72 36 112 INFO: Distances between consecutive points are 36 38 40 35 INFO: Selected control points in test subject's space are 35 11 12 37 20 11 30 26 12 25 18 11 28 11 16 INFO: Distances between consecutive points in test subject's space are 9 9 9 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.046623 INFO: Points where local peeks in curvature occur are 111 46 89 (curv = 0.0518218) 115 50 87 (curv = 0.0513317) 120 66 87 (curv = 0.0932673) 103 86 85 (curv = 0.0471447) 89 90 83 (curv = 0.0733946) 79 88 85 (curv = 0.0481888) 58 66 85 (curv = 0.114354) INFO: Intermediate dominant points are 105 38 106 120 66 87 89 90 83 58 66 85 71 34 102 INFO: Final dominant points are 105 38 106 120 66 87 89 90 83 58 66 85 71 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 38 106 120 62 87 91 90 83 59 68 85 71 34 102 INFO: Distances between consecutive points are 34 41 39 40 INFO: Selected control points in test subject's space are 35 12 15 39 19 11 32 26 11 25 21 11 27 11 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 11 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0480119 INFO: Points where local peeks in curvature occur are 110 42 83 (curv = 0.0919175) 116 55 83 (curv = 0.0734039) 90 90 83 (curv = 0.0992062) 84 89 84 (curv = 0.0764291) 61 60 86 (curv = 0.0986501) 65 50 86 (curv = 0.0861904) INFO: Intermediate dominant points are 100 33 100 115 60 83 90 90 83 61 60 86 71 38 111 INFO: Final dominant points are 100 33 100 108 76 84 90 90 83 61 60 86 71 38 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 100 115 60 83 88 90 83 61 60 86 71 38 111 INFO: Distances between consecutive points are 35 40 40 35 INFO: Selected control points in test subject's space are 34 11 13 38 19 10 31 26 11 25 19 11 27 12 16 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0438709 INFO: Points where local peeks in curvature occur are 120 60 86 (curv = 0.10946) 97 86 83 (curv = 0.0493011) 81 87 83 (curv = 0.0630418) 60 66 85 (curv = 0.10267) INFO: Intermediate dominant points are 105 39 100 120 60 86 97 86 83 60 66 85 75 36 106 INFO: Final dominant points are 105 39 100 120 60 86 97 86 83 60 66 85 75 36 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 118 68 87 88 87 83 60 66 85 75 36 106 INFO: Distances between consecutive points are 34 36 35 40 INFO: Selected control points in test subject's space are 35 13 13 38 21 11 31 25 11 25 20 11 28 12 15 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0485175 INFO: Points where local peeks in curvature occur are 115 46 82 (curv = 0.078568) 118 53 84 (curv = 0.0723042) 89 91 84 (curv = 0.0848709) 81 88 85 (curv = 0.0487708) 59 57 85 (curv = 0.100469) 65 48 87 (curv = 0.0661462) INFO: Intermediate dominant points are 104 33 99 115 46 82 89 91 84 59 57 85 70 37 107 INFO: Final dominant points are 104 33 99 115 46 82 89 91 84 59 57 85 70 37 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 99 118 59 85 91 91 84 60 65 86 70 37 107 INFO: Distances between consecutive points are 33 42 41 36 INFO: Selected control points in test subject's space are 35 11 13 38 18 11 32 26 12 25 20 11 27 12 15 INFO: Distances between consecutive points in test subject's space are 8 10 9 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0491564 INFO: Points where local peeks in curvature occur are 119 64 89 (curv = 0.115389) 109 78 84 (curv = 0.0540954) 90 89 83 (curv = 0.070447) 62 69 87 (curv = 0.0731613) 61 61 86 (curv = 0.0760832) INFO: Intermediate dominant points are 105 41 107 119 64 89 93 89 83 61 61 86 71 36 96 INFO: Final dominant points are 105 41 107 119 64 89 70 79 86 61 61 86 71 36 96 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 41 107 120 61 88 95 88 84 62 70 87 71 36 96 INFO: Distances between consecutive points are 31 37 38 36 INFO: Selected control points in test subject's space are 35 13 15 39 19 11 33 26 11 25 21 12 27 12 12 INFO: Distances between consecutive points in test subject's space are 8 9 9 9 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0498143 INFO: Points where local peeks in curvature occur are 112 47 88 (curv = 0.117823) 119 61 88 (curv = 0.15205) 106 83 83 (curv = 0.0507377) 91 89 83 (curv = 0.0538583) 82 88 83 (curv = 0.0646419) 61 63 87 (curv = 0.0980233) INFO: Intermediate dominant points are 106 41 107 119 61 88 82 88 83 61 63 87 71 36 96 INFO: Final dominant points are 106 41 107 119 61 88 82 88 83 61 63 87 71 36 96 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 107 119 60 87 96 88 83 63 71 87 71 36 96 INFO: Distances between consecutive points are 30 36 37 37 INFO: Selected control points in test subject's space are 35 13 15 38 19 11 33 26 11 26 21 12 27 12 12 INFO: Distances between consecutive points in test subject's space are 8 9 9 9 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0469844 INFO: Points where local peeks in curvature occur are 121 64 86 (curv = 0.123651) 117 71 89 (curv = 0.0593939) 102 86 85 (curv = 0.0519863) 90 90 83 (curv = 0.0642463) 77 87 85 (curv = 0.049648) 59 67 85 (curv = 0.0871155) INFO: Intermediate dominant points are 105 39 100 121 64 86 90 90 83 59 67 85 71 34 102 INFO: Final dominant points are 105 39 100 121 64 86 90 90 83 59 67 85 71 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 120 66 87 87 90 84 59 65 85 71 34 102 INFO: Distances between consecutive points are 34 41 38 37 INFO: Selected control points in test subject's space are 35 13 13 39 20 11 31 26 12 25 20 11 27 11 14 INFO: Distances between consecutive points in test subject's space are 8 10 9 10 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0476028 INFO: Points where local peeks in curvature occur are 107 45 93 (curv = 0.0635321) 112 51 89 (curv = 0.0646991) 115 57 89 (curv = 0.0921817) 108 78 84 (curv = 0.0577269) 86 88 83 (curv = 0.0536946) 80 87 84 (curv = 0.0736166) 70 77 84 (curv = 0.0709629) 64 60 88 (curv = 0.0882888) INFO: Intermediate dominant points are 98 44 115 115 57 89 80 87 84 64 60 88 76 38 102 INFO: Final dominant points are 98 44 115 115 57 89 80 87 84 64 60 88 76 38 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 115 115 59 88 94 87 83 67 68 86 76 38 102 INFO: Distances between consecutive points are 35 35 33 35 INFO: Selected control points in test subject's space are 34 13 17 38 18 11 33 25 11 26 21 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 9 8 10 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0453022 INFO: Points where local peeks in curvature occur are 116 52 86 (curv = 0.0781556) 120 62 87 (curv = 0.108308) 118 68 88 (curv = 0.052814) 100 86 83 (curv = 0.0594861) 80 86 83 (curv = 0.0680439) 60 66 85 (curv = 0.10267) INFO: Intermediate dominant points are 105 39 100 120 62 87 100 86 83 60 66 85 75 36 105 INFO: Final dominant points are 105 39 100 120 62 87 100 86 83 60 66 85 75 36 105 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 118 66 87 89 87 83 60 66 85 75 36 105 INFO: Distances between consecutive points are 33 36 36 39 INFO: Selected control points in test subject's space are 35 13 13 38 20 11 32 25 11 25 20 11 28 12 14 INFO: Distances between consecutive points in test subject's space are 8 8 9 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0447889 INFO: Points where local peeks in curvature occur are 114 46 83 (curv = 0.0730991) 121 64 86 (curv = 0.105742) 102 86 84 (curv = 0.0700623) 81 88 83 (curv = 0.0584465) 62 72 85 (curv = 0.0469622) 60 65 85 (curv = 0.0919146) 68 47 87 (curv = 0.0691441) INFO: Intermediate dominant points are 105 32 100 121 64 86 89 88 83 60 65 85 74 34 106 INFO: Final dominant points are 105 32 100 121 64 86 72 83 84 60 65 85 74 34 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 32 100 121 61 85 92 88 83 60 66 85 74 34 106 INFO: Distances between consecutive points are 36 40 39 41 INFO: Selected control points in test subject's space are 35 11 13 39 19 11 32 26 11 25 20 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 9 10 9 10 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0465601 INFO: Points where local peeks in curvature occur are 112 46 87 (curv = 0.101146) 118 58 85 (curv = 0.0934113) 119 63 85 (curv = 0.0713347) 102 87 83 (curv = 0.063485) 82 89 83 (curv = 0.0588006) 62 67 87 (curv = 0.092733) INFO: Intermediate dominant points are 102 38 108 112 46 87 82 89 83 62 67 87 72 36 97 INFO: Final dominant points are 102 38 108 112 46 87 82 89 83 62 67 87 72 36 97 WARN: Defaulting to equidistant control points INFO: Selected control points are 102 38 108 118 57 85 97 89 83 64 71 87 72 36 97 INFO: Distances between consecutive points are 34 38 38 37 INFO: Selected control points in test subject's space are 35 12 15 38 18 10 33 26 11 26 21 12 28 12 13 INFO: Distances between consecutive points in test subject's space are 8 9 9 9 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0429216 INFO: Points where local peeks in curvature occur are 111 43 84 (curv = 0.0811525) 118 62 85 (curv = 0.0984673) 114 74 83 (curv = 0.0487509) 98 85 81 (curv = 0.054179) 84 87 82 (curv = 0.0568491) 68 79 83 (curv = 0.0521201) 62 61 85 (curv = 0.0726361) INFO: Intermediate dominant points are 97 34 106 118 62 85 84 87 82 62 61 85 75 35 106 INFO: Final dominant points are 97 34 106 118 62 85 84 87 82 62 61 85 75 35 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 97 34 106 117 56 84 93 86 81 63 66 85 75 35 106 INFO: Distances between consecutive points are 37 39 36 39 INFO: Selected control points in test subject's space are 33 11 15 38 18 10 32 25 11 26 20 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 10 9 8 10 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0464025 INFO: Points where local peeks in curvature occur are 119 55 86 (curv = 0.0495025) 121 64 86 (curv = 0.130435) 116 72 89 (curv = 0.0582625) 101 87 85 (curv = 0.0570255) 90 90 83 (curv = 0.0609416) 59 68 85 (curv = 0.0795863) 60 59 84 (curv = 0.0781423) 67 47 87 (curv = 0.0708759) INFO: Intermediate dominant points are 105 39 100 121 64 86 90 90 83 59 68 85 71 34 102 INFO: Final dominant points are 105 39 100 121 64 86 90 90 83 59 68 85 71 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 120 66 87 87 90 84 59 64 84 71 34 102 INFO: Distances between consecutive points are 34 41 38 37 INFO: Selected control points in test subject's space are 35 13 13 39 20 11 31 26 12 25 20 11 27 11 14 INFO: Distances between consecutive points in test subject's space are 8 10 9 10 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0442713 INFO: Points where local peeks in curvature occur are 116 51 84 (curv = 0.0729809) 95 89 83 (curv = 0.0794473) 85 90 83 (curv = 0.0623755) 61 61 86 (curv = 0.0840633) 64 51 85 (curv = 0.0899655) 71 43 93 (curv = 0.0614865) INFO: Intermediate dominant points are 104 36 92 116 51 84 95 89 83 64 51 85 73 36 112 INFO: Final dominant points are 104 36 92 116 51 84 95 89 83 64 51 85 73 36 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 36 92 113 67 84 83 89 83 62 56 85 73 36 112 INFO: Distances between consecutive points are 33 37 39 35 INFO: Selected control points in test subject's space are 35 12 11 37 20 11 30 26 11 25 18 11 28 11 16 INFO: Distances between consecutive points in test subject's space are 8 9 9 9 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0451545 INFO: Points where local peeks in curvature occur are 113 44 83 (curv = 0.0814446) 121 64 86 (curv = 0.104738) 98 87 83 (curv = 0.0617122) 80 87 84 (curv = 0.0725622) 60 65 85 (curv = 0.110152) INFO: Intermediate dominant points are 105 32 100 121 64 86 80 87 84 60 65 85 75 36 105 INFO: Final dominant points are 105 32 100 121 64 86 80 87 84 60 65 85 75 36 105 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 32 100 120 59 85 93 87 83 62 69 85 75 36 105 INFO: Distances between consecutive points are 34 39 36 41 INFO: Selected control points in test subject's space are 35 11 13 39 18 11 32 25 11 25 21 11 28 12 14 INFO: Distances between consecutive points in test subject's space are 8 10 8 10 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0469801 INFO: Points where local peeks in curvature occur are 118 53 87 (curv = 0.0589278) 121 64 87 (curv = 0.125571) 117 71 89 (curv = 0.0584202) 101 87 85 (curv = 0.059235) 90 90 83 (curv = 0.067132) 59 67 85 (curv = 0.0918854) 67 47 87 (curv = 0.0723939) INFO: Intermediate dominant points are 105 39 100 121 64 87 90 90 83 59 67 85 71 34 103 INFO: Final dominant points are 105 39 100 121 64 87 90 90 83 59 67 85 71 34 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 119 67 88 88 90 83 59 66 85 71 34 103 INFO: Distances between consecutive points are 34 39 38 39 INFO: Selected control points in test subject's space are 35 13 13 38 20 12 31 26 11 25 20 11 27 11 14 INFO: Distances between consecutive points in test subject's space are 8 9 8 10 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0433314 INFO: Points where local peeks in curvature occur are 114 50 88 (curv = 0.0787222) 116 59 88 (curv = 0.0727192) 107 81 83 (curv = 0.0479321) 97 88 83 (curv = 0.0499318) 87 90 83 (curv = 0.0643869) 78 87 84 (curv = 0.0712458) 69 78 83 (curv = 0.0797963) 65 60 87 (curv = 0.0768643) INFO: Intermediate dominant points are 105 37 103 114 50 88 97 88 83 69 78 83 77 38 103 INFO: Final dominant points are 105 37 103 114 50 88 97 88 83 69 78 83 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 115 65 86 88 90 83 66 65 86 77 38 103 INFO: Distances between consecutive points are 34 37 33 34 INFO: Selected control points in test subject's space are 35 12 14 38 20 11 31 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 9 8 9 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0451546 INFO: Points where local peeks in curvature occur are 108 45 93 (curv = 0.0708675) 115 55 89 (curv = 0.0951942) 100 86 83 (curv = 0.0525419) 86 89 84 (curv = 0.0680488) 74 84 85 (curv = 0.0562291) 69 77 85 (curv = 0.0457401) 63 62 87 (curv = 0.0901299) INFO: Intermediate dominant points are 98 44 116 115 55 89 86 89 84 63 62 87 70 30 91 INFO: Final dominant points are 98 44 116 115 55 89 86 89 84 63 62 87 70 30 91 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 116 115 59 89 93 88 83 64 66 87 70 30 91 INFO: Distances between consecutive points are 35 37 37 37 INFO: Selected control points in test subject's space are 34 13 17 38 18 12 32 26 11 26 20 11 27 11 11 INFO: Distances between consecutive points in test subject's space are 8 10 8 9 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0479736 INFO: Points where local peeks in curvature occur are 118 54 85 (curv = 0.0855587) 89 91 84 (curv = 0.092381) 65 73 89 (curv = 0.0515557) 59 64 86 (curv = 0.059933) 60 55 85 (curv = 0.109194) INFO: Intermediate dominant points are 105 35 94 118 54 85 89 91 84 60 55 85 69 38 107 INFO: Final dominant points are 105 35 94 118 54 85 89 91 84 60 55 85 69 38 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 35 94 116 64 87 88 91 84 59 61 86 69 38 107 INFO: Distances between consecutive points are 32 39 42 33 INFO: Selected control points in test subject's space are 35 12 12 38 20 11 31 26 12 25 19 11 27 12 15 INFO: Distances between consecutive points in test subject's space are 9 9 9 8 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0456392 INFO: Points where local peeks in curvature occur are 116 53 85 (curv = 0.0690447) 118 62 86 (curv = 0.0830566) 115 72 84 (curv = 0.0461457) 107 81 82 (curv = 0.0490635) 94 86 81 (curv = 0.0469854) 83 87 82 (curv = 0.0791426) 70 80 83 (curv = 0.049736) 62 64 85 (curv = 0.0700945) 68 49 88 (curv = 0.070662) INFO: Intermediate dominant points are 104 38 98 118 62 86 83 87 82 68 49 88 75 35 106 INFO: Final dominant points are 104 38 98 118 62 86 83 87 82 68 49 88 75 35 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 38 98 116 69 85 86 86 82 62 65 85 75 35 106 INFO: Distances between consecutive points are 36 35 32 39 INFO: Selected control points in test subject's space are 35 13 13 38 21 11 31 25 11 25 20 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 9 8 8 10 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0475669 INFO: Points where local peeks in curvature occur are 119 55 87 (curv = 0.0548376) 121 64 87 (curv = 0.132061) 117 71 89 (curv = 0.0562848) 95 89 83 (curv = 0.057389) 59 66 85 (curv = 0.112448) 66 49 88 (curv = 0.0683579) INFO: Intermediate dominant points are 105 39 100 121 64 87 95 89 83 59 66 85 71 35 102 INFO: Final dominant points are 105 39 100 121 64 87 95 89 83 59 66 85 71 35 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 120 66 87 88 89 83 59 65 85 71 35 102 INFO: Distances between consecutive points are 34 40 38 37 INFO: Selected control points in test subject's space are 35 13 13 39 20 11 31 26 11 25 20 11 27 12 14 INFO: Distances between consecutive points in test subject's space are 8 10 8 9 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0407951 INFO: Points where local peeks in curvature occur are 116 59 88 (curv = 0.0724267) 106 82 83 (curv = 0.0505259) 96 88 83 (curv = 0.0558771) 79 88 84 (curv = 0.0889756) 70 79 84 (curv = 0.0524408) 68 75 84 (curv = 0.0591901) 65 58 88 (curv = 0.0895473) INFO: Intermediate dominant points are 103 39 100 116 59 88 79 88 84 65 58 88 77 38 103 INFO: Final dominant points are 103 39 100 116 59 88 79 88 84 65 58 88 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 100 114 67 86 88 89 83 66 66 86 77 38 103 INFO: Distances between consecutive points are 33 34 32 35 INFO: Selected control points in test subject's space are 35 13 13 37 20 11 31 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 8 8 8 9 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0475278 INFO: Points where local peeks in curvature occur are 119 56 86 (curv = 0.0711874) 119 64 87 (curv = 0.0885372) 98 86 82 (curv = 0.0584077) 82 86 83 (curv = 0.0635996) 72 82 84 (curv = 0.0476238) 61 66 86 (curv = 0.0978464) 62 59 86 (curv = 0.0686127) INFO: Intermediate dominant points are 104 39 100 119 64 87 82 86 83 61 66 86 74 38 101 INFO: Final dominant points are 104 39 100 119 64 87 82 86 83 61 66 86 74 38 101 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 100 119 65 87 91 86 82 62 69 85 74 38 101 INFO: Distances between consecutive points are 33 35 34 37 INFO: Selected control points in test subject's space are 35 13 13 38 20 11 32 25 11 25 21 11 28 12 14 INFO: Distances between consecutive points in test subject's space are 8 8 8 10 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0479282 INFO: Points where local peeks in curvature occur are 117 53 86 (curv = 0.0694259) 121 64 87 (curv = 0.13111) 117 71 89 (curv = 0.0518182) 101 87 84 (curv = 0.054285) 97 88 84 (curv = 0.0599467) 80 88 84 (curv = 0.0498672) 59 68 85 (curv = 0.0994273) INFO: Intermediate dominant points are 105 39 100 121 64 87 97 88 84 59 68 85 71 35 102 INFO: Final dominant points are 105 39 100 121 64 87 97 88 84 59 68 85 71 35 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 100 120 66 87 89 89 83 59 69 86 71 35 102 INFO: Distances between consecutive points are 34 39 36 39 INFO: Selected control points in test subject's space are 35 13 13 39 20 11 32 26 11 25 21 11 27 12 14 INFO: Distances between consecutive points in test subject's space are 8 9 9 10 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0470127 INFO: Points where local peeks in curvature occur are 112 48 87 (curv = 0.106088) 118 58 86 (curv = 0.0710314) 118 67 85 (curv = 0.0685644) 103 86 83 (curv = 0.0584909) 91 90 83 (curv = 0.0623572) 82 89 83 (curv = 0.0580644) 62 65 87 (curv = 0.0853679) INFO: Intermediate dominant points are 105 40 107 112 48 87 118 67 85 62 65 87 72 38 95 INFO: Final dominant points are 105 40 107 112 48 87 118 67 85 62 65 87 72 38 95 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 105 40 107 118 59 86 96 89 83 65 73 86 72 38 95 INFO: Distances between consecutive points are 31 37 35 37 INFO: Selected control points in test subject's space are 35 13 15 38 18 11 33 26 11 26 22 11 28 13 12 INFO: Distances between consecutive points in test subject's space are 7 9 8 9 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0456116 INFO: Points where local peeks in curvature occur are 112 44 81 (curv = 0.0777333) 115 55 83 (curv = 0.05335) 89 90 83 (curv = 0.10891) 62 61 87 (curv = 0.0831009) 64 52 86 (curv = 0.085015) 69 45 91 (curv = 0.0573378) INFO: Intermediate dominant points are 102 31 98 112 44 81 89 90 83 64 52 86 72 39 111 INFO: Final dominant points are 102 31 98 112 44 81 89 90 83 64 52 86 72 39 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 102 31 98 115 60 83 89 90 83 62 62 87 72 39 111 INFO: Distances between consecutive points are 35 40 39 35 INFO: Selected control points in test subject's space are 35 11 13 38 19 10 32 26 11 25 19 11 28 12 16 INFO: Distances between consecutive points in test subject's space are 9 9 10 9 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0448035 INFO: Points where local peeks in curvature occur are 116 53 85 (curv = 0.0695229) 118 62 86 (curv = 0.0867434) 115 72 84 (curv = 0.0485952) 106 82 82 (curv = 0.0571566) 93 86 81 (curv = 0.0478692) 83 86 82 (curv = 0.064706) 62 66 85 (curv = 0.0699286) 63 59 85 (curv = 0.0573724) 68 48 87 (curv = 0.0565803) INFO: Intermediate dominant points are 104 38 98 118 62 86 106 82 82 62 66 85 75 34 108 INFO: Final dominant points are 104 38 98 118 62 86 106 82 82 62 66 85 75 34 108 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 38 98 116 67 85 86 86 82 62 62 85 75 34 108 INFO: Distances between consecutive points are 34 36 34 38 INFO: Selected control points in test subject's space are 35 13 13 38 20 11 31 25 11 25 19 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 8 9 8 9 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 124 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0469075 INFO: Points where local peeks in curvature occur are 119 57 86 (curv = 0.0679526) 119 64 87 (curv = 0.113331) 104 83 83 (curv = 0.0504133) 97 86 82 (curv = 0.0542697) 83 86 82 (curv = 0.0631955) 61 63 86 (curv = 0.112153) 66 53 89 (curv = 0.0474342) INFO: Intermediate dominant points are 104 39 100 119 64 87 83 86 82 61 63 86 72 36 103 INFO: Final dominant points are 104 39 100 119 64 87 83 86 82 61 63 86 72 36 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 100 119 64 87 91 86 82 63 71 85 72 36 103 INFO: Distances between consecutive points are 32 36 32 40 INFO: Selected control points in test subject's space are 35 13 13 38 20 11 32 25 11 26 21 11 28 12 14 INFO: Distances between consecutive points in test subject's space are 8 8 7 10 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0432143 INFO: Points where local peeks in curvature occur are 120 59 86 (curv = 0.097078) 119 67 87 (curv = 0.0689015) 103 85 83 (curv = 0.0532874) 98 87 83 (curv = 0.0498119) 80 87 83 (curv = 0.0713285) 61 65 85 (curv = 0.0737009) INFO: Intermediate dominant points are 106 35 95 120 59 86 80 87 83 61 65 85 72 34 102 INFO: Final dominant points are 106 35 95 120 59 86 80 87 83 61 65 85 72 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 95 120 64 86 90 87 82 61 66 85 72 34 102 INFO: Distances between consecutive points are 33 38 36 38 INFO: Selected control points in test subject's space are 35 12 12 39 20 11 32 26 11 25 20 11 28 11 14 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 124 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0457073 INFO: Points where local peeks in curvature occur are 119 60 86 (curv = 0.0893994) 117 69 87 (curv = 0.0626808) 100 85 83 (curv = 0.0593462) 85 87 82 (curv = 0.0604328) 61 64 85 (curv = 0.0838937) INFO: Intermediate dominant points are 104 39 100 119 60 86 85 87 82 61 64 85 75 37 102 INFO: Final dominant points are 104 39 100 119 60 86 85 87 82 61 64 85 75 37 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 100 119 63 87 92 86 82 63 70 85 75 37 102 INFO: Distances between consecutive points are 31 36 33 39 INFO: Selected control points in test subject's space are 35 13 13 38 19 11 32 25 11 26 21 11 28 12 14 INFO: Distances between consecutive points in test subject's space are 7 8 7 10 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0464212 INFO: Points where local peeks in curvature occur are 116 53 84 (curv = 0.10712) 95 89 83 (curv = 0.0667646) 90 90 83 (curv = 0.0824534) 61 59 86 (curv = 0.0844216) 63 52 86 (curv = 0.0746353) 67 47 88 (curv = 0.0699548) INFO: Intermediate dominant points are 103 36 92 116 53 84 90 90 83 61 59 86 72 38 111 INFO: Final dominant points are 103 36 92 116 53 84 90 90 83 61 59 86 72 38 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 36 92 113 66 84 85 89 84 61 59 86 72 38 111 INFO: Distances between consecutive points are 33 36 38 34 INFO: Selected control points in test subject's space are 35 12 11 37 20 11 31 26 12 25 18 11 28 12 16 INFO: Distances between consecutive points in test subject's space are 8 9 10 8 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0493643 INFO: Points where local peeks in curvature occur are 112 47 92 (curv = 0.0805365) 118 55 87 (curv = 0.0635764) 120 59 88 (curv = 0.0646042) 120 66 87 (curv = 0.10895) 89 90 83 (curv = 0.0731758) 78 87 85 (curv = 0.0525566) 59 67 85 (curv = 0.0913086) INFO: Intermediate dominant points are 103 38 114 120 66 87 89 90 83 59 67 85 71 34 102 INFO: Final dominant points are 103 38 114 120 66 87 89 90 83 59 67 85 71 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 114 120 60 87 92 89 83 59 68 85 71 34 102 INFO: Distances between consecutive points are 39 41 39 40 INFO: Selected control points in test subject's space are 35 12 17 39 19 11 32 26 11 25 21 11 27 11 14 INFO: Distances between consecutive points in test subject's space are 10 10 9 11 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0472528 INFO: Points where local peeks in curvature occur are 107 45 93 (curv = 0.0608201) 115 56 89 (curv = 0.107152) 108 78 84 (curv = 0.0573091) 88 88 83 (curv = 0.0679056) 82 87 83 (curv = 0.0555873) 71 78 84 (curv = 0.0609089) 64 60 88 (curv = 0.112562) INFO: Intermediate dominant points are 98 44 115 115 56 89 88 88 83 64 60 88 76 37 102 INFO: Final dominant points are 98 44 115 115 56 89 88 88 83 64 60 88 76 37 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 115 115 58 89 95 87 83 67 68 86 76 37 102 INFO: Distances between consecutive points are 34 36 34 36 INFO: Selected control points in test subject's space are 34 13 17 38 18 11 33 25 11 26 21 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 9 8 10 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0426675 INFO: Points where local peeks in curvature occur are 113 44 83 (curv = 0.0939719) 119 63 86 (curv = 0.0791792) 105 83 83 (curv = 0.0435261) 99 86 82 (curv = 0.0551826) 91 87 81 (curv = 0.0488596) 81 87 82 (curv = 0.069037) 68 78 83 (curv = 0.0452082) 62 64 85 (curv = 0.0707365) 68 48 88 (curv = 0.0521075) INFO: Intermediate dominant points are 105 31 99 119 63 86 81 87 82 62 64 85 75 34 107 INFO: Final dominant points are 105 31 99 119 63 86 81 87 82 62 64 85 75 34 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 31 99 119 63 86 89 87 82 62 64 85 75 34 107 INFO: Distances between consecutive points are 37 39 36 39 INFO: Selected control points in test subject's space are 35 11 13 38 19 11 32 26 11 25 20 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0401746 INFO: Points where local peeks in curvature occur are 116 58 88 (curv = 0.0770299) 109 79 83 (curv = 0.059334) 98 87 83 (curv = 0.0427889) 87 90 83 (curv = 0.0784335) 74 85 84 (curv = 0.0548079) 69 77 84 (curv = 0.0483632) 65 60 87 (curv = 0.0534947) INFO: Intermediate dominant points are 103 38 100 116 58 88 87 90 83 65 60 87 77 38 102 INFO: Final dominant points are 103 38 100 116 58 88 87 90 83 65 60 87 77 38 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 100 114 68 86 87 90 83 65 64 87 77 38 102 INFO: Distances between consecutive points are 35 35 34 32 INFO: Selected control points in test subject's space are 35 12 13 37 21 11 31 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0431471 INFO: Points where local peeks in curvature occur are 120 61 86 (curv = 0.0836395) 119 65 87 (curv = 0.074994) 99 86 82 (curv = 0.0706361) 84 87 82 (curv = 0.0573985) 68 79 83 (curv = 0.0486686) 62 65 85 (curv = 0.062454) 63 58 85 (curv = 0.0570848) 69 46 88 (curv = 0.054106) INFO: Intermediate dominant points are 106 35 95 120 61 86 86 87 82 62 65 85 76 34 107 INFO: Final dominant points are 106 35 95 120 61 86 73 82 83 62 65 85 76 34 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 95 119 64 86 89 87 82 62 64 85 76 34 107 INFO: Distances between consecutive points are 33 38 36 40 INFO: Selected control points in test subject's space are 35 12 12 38 20 11 32 26 11 25 20 11 29 11 15 INFO: Distances between consecutive points in test subject's space are 9 8 9 11 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0432192 INFO: Points where local peeks in curvature occur are 119 64 86 (curv = 0.0707218) 104 83 82 (curv = 0.0628481) 97 86 82 (curv = 0.0448423) 82 87 82 (curv = 0.0716426) 62 63 85 (curv = 0.0701507) 68 48 88 (curv = 0.064992) INFO: Intermediate dominant points are 107 33 96 119 64 86 82 87 82 62 63 85 75 35 106 INFO: Final dominant points are 107 33 96 119 64 86 82 87 82 62 63 85 75 35 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 96 119 63 86 90 86 81 62 65 85 75 35 106 INFO: Distances between consecutive points are 34 37 35 39 INFO: Selected control points in test subject's space are 36 11 12 38 19 11 32 25 11 25 20 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 8 8 9 10 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0399075 INFO: Points where local peeks in curvature occur are 116 60 88 (curv = 0.0642419) 108 80 83 (curv = 0.0501122) 92 90 83 (curv = 0.0631306) 83 89 84 (curv = 0.0557166) 69 78 84 (curv = 0.0557495) 65 62 87 (curv = 0.0620736) 66 55 88 (curv = 0.0523005) INFO: Intermediate dominant points are 103 38 100 116 60 88 92 90 83 65 62 87 77 38 103 INFO: Final dominant points are 103 38 100 116 60 88 92 90 83 65 62 87 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 100 114 67 86 88 90 83 65 64 87 77 38 103 INFO: Distances between consecutive points are 34 35 35 33 INFO: Selected control points in test subject's space are 35 12 13 37 20 11 31 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 8 8 8 9 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0425787 INFO: Points where local peeks in curvature occur are 115 56 88 (curv = 0.0553466) 105 83 82 (curv = 0.0565527) 96 88 82 (curv = 0.046611) 89 89 82 (curv = 0.0468494) 79 87 83 (curv = 0.0824689) 70 78 82 (curv = 0.0793774) 65 59 87 (curv = 0.0767925) INFO: Intermediate dominant points are 106 35 104 105 83 82 79 87 83 65 59 87 77 38 102 INFO: Final dominant points are 106 35 104 105 83 82 79 87 83 65 59 87 77 38 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 104 114 64 86 89 89 82 67 66 85 77 38 102 INFO: Distances between consecutive points are 35 36 32 34 INFO: Selected control points in test subject's space are 35 12 14 37 20 11 32 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0470678 INFO: Points where local peeks in curvature occur are 110 48 91 (curv = 0.0730194) 115 55 89 (curv = 0.0788441) 109 77 84 (curv = 0.0547526) 100 86 84 (curv = 0.0525542) 95 88 83 (curv = 0.0526639) 87 89 84 (curv = 0.0687057) 72 82 85 (curv = 0.0538046) 63 62 87 (curv = 0.0908579) INFO: Intermediate dominant points are 98 44 115 115 55 89 87 89 84 63 62 87 71 30 90 INFO: Final dominant points are 98 44 115 115 55 89 87 89 84 63 62 87 71 30 90 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 115 115 59 89 93 88 83 64 65 87 71 30 90 INFO: Distances between consecutive points are 34 37 37 36 INFO: Selected control points in test subject's space are 34 13 17 38 18 12 32 26 11 26 20 11 27 11 11 INFO: Distances between consecutive points in test subject's space are 8 10 8 9 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0442821 INFO: Points where local peeks in curvature occur are 113 47 88 (curv = 0.104776) 116 58 88 (curv = 0.0792648) 103 84 83 (curv = 0.0558024) 94 89 82 (curv = 0.0758652) 82 88 83 (curv = 0.0581034) 69 78 82 (curv = 0.0846877) 65 58 88 (curv = 0.091664) INFO: Intermediate dominant points are 106 35 104 114 65 86 69 78 82 65 58 88 77 38 104 INFO: Final dominant points are 106 35 104 86 89 83 69 78 82 65 58 88 77 38 104 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 104 115 64 86 90 89 83 66 65 85 77 38 104 INFO: Distances between consecutive points are 35 35 34 35 INFO: Selected control points in test subject's space are 35 12 14 38 20 11 32 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0484226 INFO: Points where local peeks in curvature occur are 111 45 94 (curv = 0.0992486) 117 53 88 (curv = 0.0527008) 121 64 87 (curv = 0.104517) 103 86 85 (curv = 0.0542764) 83 89 84 (curv = 0.0582294) 58 65 85 (curv = 0.103457) INFO: Intermediate dominant points are 103 39 114 121 64 87 83 89 84 58 65 85 71 34 102 INFO: Final dominant points are 103 39 114 121 64 87 83 89 84 58 65 85 71 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 114 120 59 88 95 89 84 59 68 85 71 34 102 INFO: Distances between consecutive points are 37 39 42 40 INFO: Selected control points in test subject's space are 35 12 17 39 18 11 33 26 12 25 21 11 27 11 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 11 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0426238 INFO: Points where local peeks in curvature occur are 121 63 86 (curv = 0.0817313) 117 71 88 (curv = 0.0652619) 99 87 83 (curv = 0.0785858) 83 88 83 (curv = 0.0638317) 72 83 84 (curv = 0.0507096) 61 67 85 (curv = 0.0848473) 61 59 85 (curv = 0.0565983) INFO: Intermediate dominant points are 106 35 94 121 63 86 99 87 83 61 67 85 72 34 102 INFO: Final dominant points are 106 35 94 121 63 86 99 87 83 61 67 85 72 34 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 94 120 67 87 88 88 83 60 66 85 72 34 102 INFO: Distances between consecutive points are 36 38 36 38 INFO: Selected control points in test subject's space are 35 12 12 39 20 11 31 26 11 25 20 11 28 11 14 INFO: Distances between consecutive points in test subject's space are 9 10 8 10 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0445895 INFO: Points where local peeks in curvature occur are 109 47 91 (curv = 0.0720252) 115 56 89 (curv = 0.0829868) 110 76 84 (curv = 0.0482886) 97 87 83 (curv = 0.0564172) 87 89 83 (curv = 0.0592453) 80 87 84 (curv = 0.0572674) 70 77 84 (curv = 0.0482074) 63 62 87 (curv = 0.101194) INFO: Intermediate dominant points are 98 44 116 115 56 89 87 89 83 63 62 87 71 30 91 INFO: Final dominant points are 98 44 116 115 56 89 87 89 83 63 62 87 71 30 91 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 116 115 58 89 93 88 83 64 66 87 71 30 91 INFO: Distances between consecutive points are 35 38 37 37 INFO: Selected control points in test subject's space are 34 13 17 38 18 11 32 26 11 26 20 11 27 11 11 INFO: Distances between consecutive points in test subject's space are 9 10 8 9 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0439384 INFO: Points where local peeks in curvature occur are 120 62 86 (curv = 0.0976323) 103 84 82 (curv = 0.0531216) 97 86 82 (curv = 0.0539968) 93 86 81 (curv = 0.059334) 83 87 82 (curv = 0.0559752) 70 81 83 (curv = 0.0670643) 62 63 85 (curv = 0.0684734) 68 48 88 (curv = 0.0583663) INFO: Intermediate dominant points are 107 33 96 120 62 86 93 86 81 62 63 85 76 34 107 INFO: Final dominant points are 107 33 96 120 62 86 93 86 81 62 63 85 76 34 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 96 119 63 86 91 86 81 63 66 85 76 34 107 INFO: Distances between consecutive points are 34 37 35 41 INFO: Selected control points in test subject's space are 36 11 12 38 19 11 32 25 11 26 20 11 29 11 15 INFO: Distances between consecutive points in test subject's space are 8 8 8 10 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0442889 INFO: Points where local peeks in curvature occur are 119 61 86 (curv = 0.0812327) 105 83 82 (curv = 0.0577243) 92 86 81 (curv = 0.0529207) 84 87 82 (curv = 0.0820307) 71 81 83 (curv = 0.0469587) 62 66 85 (curv = 0.0714491) 68 48 88 (curv = 0.0553163) INFO: Intermediate dominant points are 107 33 96 119 61 86 84 87 82 68 48 88 75 34 107 INFO: Final dominant points are 107 33 96 119 61 86 84 87 82 68 48 88 75 34 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 96 119 63 86 88 86 82 62 65 85 75 34 107 INFO: Distances between consecutive points are 34 39 34 40 INFO: Selected control points in test subject's space are 36 11 12 38 19 11 31 25 11 25 20 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 8 9 8 10 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0504841 INFO: Points where local peeks in curvature occur are 112 47 92 (curv = 0.109347) 120 58 88 (curv = 0.0756686) 120 66 88 (curv = 0.11131) 58 67 85 (curv = 0.114322) INFO: Intermediate dominant points are 104 38 113 120 66 88 94 89 84 58 67 85 71 35 102 INFO: Final dominant points are 104 38 113 120 66 88 73 84 86 58 67 85 71 35 102 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 38 113 120 59 88 95 89 84 60 71 87 71 35 102 INFO: Distances between consecutive points are 36 39 39 41 INFO: Selected control points in test subject's space are 35 12 16 39 18 11 33 26 12 25 21 12 27 12 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0450951 INFO: Points where local peeks in curvature occur are 114 55 81 (curv = 0.0689032) 114 65 81 (curv = 0.0542083) 88 90 82 (curv = 0.0871941) 62 62 86 (curv = 0.0751841) 64 52 85 (curv = 0.0874657) INFO: Intermediate dominant points are 98 33 98 114 55 81 88 90 82 64 52 85 74 36 112 INFO: Final dominant points are 98 33 98 114 55 81 88 90 82 64 52 85 74 36 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 33 98 114 62 81 87 90 82 62 59 86 74 36 112 INFO: Distances between consecutive points are 37 39 40 37 INFO: Selected control points in test subject's space are 34 11 13 37 19 10 31 26 11 25 18 11 28 11 16 INFO: Distances between consecutive points in test subject's space are 9 9 10 9 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0442998 INFO: Points where local peeks in curvature occur are 120 62 86 (curv = 0.0939198) 116 71 87 (curv = 0.0492996) 105 83 84 (curv = 0.0462778) 97 87 83 (curv = 0.0614395) 79 86 83 (curv = 0.0698027) 66 77 84 (curv = 0.0467442) 61 65 85 (curv = 0.0764899) 63 56 86 (curv = 0.0639163) INFO: Intermediate dominant points are 108 33 97 120 62 86 79 86 83 61 65 85 76 36 104 INFO: Final dominant points are 108 33 97 120 62 86 79 86 83 61 65 85 76 36 104 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 33 97 120 62 86 92 87 82 62 67 85 76 36 104 INFO: Distances between consecutive points are 33 38 36 39 INFO: Selected control points in test subject's space are 36 11 12 39 19 11 32 26 11 25 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0446034 INFO: Points where local peeks in curvature occur are 113 49 87 (curv = 0.101888) 114 55 88 (curv = 0.0658168) 108 78 82 (curv = 0.047875) 91 89 82 (curv = 0.059649) 85 89 82 (curv = 0.0520111) 76 85 83 (curv = 0.0592654) 69 77 82 (curv = 0.0791564) 65 59 87 (curv = 0.0804575) INFO: Intermediate dominant points are 106 35 104 113 49 87 91 89 82 65 59 87 77 38 103 INFO: Final dominant points are 106 35 104 113 49 87 91 89 82 65 59 87 77 38 103 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 104 114 61 86 92 89 82 67 66 85 77 38 103 INFO: Distances between consecutive points are 33 36 34 35 INFO: Selected control points in test subject's space are 35 12 14 37 19 11 32 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 8 9 8 9 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0477726 INFO: Points where local peeks in curvature occur are 112 45 95 (curv = 0.0629521) 117 53 88 (curv = 0.065846) 120 59 88 (curv = 0.0805308) 120 65 88 (curv = 0.0958951) 92 89 83 (curv = 0.0622577) 84 89 84 (curv = 0.0484583) 78 87 85 (curv = 0.0496289) 58 66 85 (curv = 0.11199) INFO: Intermediate dominant points are 103 39 114 120 65 88 92 89 83 58 66 85 71 35 101 INFO: Final dominant points are 103 39 114 120 65 88 92 89 83 58 66 85 71 35 101 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 114 120 59 88 95 89 84 60 71 86 71 35 101 INFO: Distances between consecutive points are 37 39 39 41 INFO: Selected control points in test subject's space are 35 12 17 39 18 11 33 26 12 25 21 11 27 12 13 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0410432 INFO: Points where local peeks in curvature occur are 118 64 86 (curv = 0.068777) 103 85 82 (curv = 0.0457689) 97 87 81 (curv = 0.0496982) 81 88 82 (curv = 0.0715968) 64 73 83 (curv = 0.0534765) 62 64 83 (curv = 0.0552887) 67 49 86 (curv = 0.0511259) INFO: Intermediate dominant points are 107 33 97 118 64 86 81 88 82 67 49 86 76 34 106 INFO: Final dominant points are 107 33 97 118 64 86 81 88 82 67 49 86 76 34 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 97 118 65 86 89 88 81 62 65 83 76 34 106 INFO: Distances between consecutive points are 36 37 36 41 INFO: Selected control points in test subject's space are 36 11 12 38 20 11 32 26 11 25 20 10 29 11 15 INFO: Distances between consecutive points in test subject's space are 9 8 9 11 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0450565 INFO: Points where local peeks in curvature occur are 115 61 88 (curv = 0.0634263) 109 77 83 (curv = 0.0464323) 94 88 83 (curv = 0.0602635) 83 88 83 (curv = 0.0701799) 70 78 84 (curv = 0.0709754) 65 60 88 (curv = 0.0767276) 65 57 88 (curv = 0.0812662) INFO: Intermediate dominant points are 102 38 100 115 61 88 70 78 84 65 57 88 77 38 104 INFO: Final dominant points are 102 38 100 115 61 88 70 78 84 65 57 88 77 38 104 WARN: Defaulting to equidistant control points INFO: Selected control points are 102 38 100 113 67 86 86 88 83 65 61 88 77 38 104 INFO: Distances between consecutive points are 34 34 35 30 INFO: Selected control points in test subject's space are 35 12 13 37 20 11 31 26 11 26 19 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 8 8 9 8 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0448645 INFO: Points where local peeks in curvature occur are 112 47 88 (curv = 0.0803711) 115 59 87 (curv = 0.0604508) 87 89 82 (curv = 0.049568) 83 89 83 (curv = 0.0586136) 79 87 83 (curv = 0.0550155) 69 78 82 (curv = 0.0841949) 65 60 86 (curv = 0.098779) 70 45 86 (curv = 0.115604) INFO: Intermediate dominant points are 106 35 106 112 47 88 87 89 82 69 78 82 77 32 104 INFO: Final dominant points are 106 35 106 112 47 88 86 89 82 69 78 82 77 32 104 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 106 114 63 86 88 89 82 66 63 85 77 32 104 INFO: Distances between consecutive points are 35 37 34 38 INFO: Selected control points in test subject's space are 35 11 15 37 19 11 31 26 11 26 19 11 29 11 14 INFO: Distances between consecutive points in test subject's space are 9 9 9 9 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0421616 INFO: Points where local peeks in curvature occur are 115 58 88 (curv = 0.0491113) 115 62 87 (curv = 0.0512025) 106 82 82 (curv = 0.0567623) 94 88 82 (curv = 0.0732613) 84 89 83 (curv = 0.0582192) 78 87 83 (curv = 0.0511847) 75 85 83 (curv = 0.0523678) 70 78 82 (curv = 0.0636634) 65 58 88 (curv = 0.0855243) INFO: Intermediate dominant points are 105 36 102 115 62 87 94 88 82 65 58 88 77 38 104 INFO: Final dominant points are 105 36 102 115 62 87 94 88 82 65 58 88 77 38 104 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 36 102 114 66 86 87 89 83 66 65 86 77 38 104 INFO: Distances between consecutive points are 35 36 32 34 INFO: Selected control points in test subject's space are 35 12 14 37 20 11 31 26 11 26 20 11 29 12 14 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 18 INFO: Minimum allowable curvature at a dominant point is 0.0464575 INFO: Points where local peeks in curvature occur are 113 48 87 (curv = 0.101052) 115 53 88 (curv = 0.0613756) 91 90 83 (curv = 0.080209) 84 90 82 (curv = 0.0544016) 76 87 83 (curv = 0.0657375) 68 78 81 (curv = 0.0832562) 66 72 83 (curv = 0.0558882) 67 55 87 (curv = 0.0609777) INFO: Intermediate dominant points are 109 35 107 113 48 87 91 90 83 68 78 81 77 35 101 INFO: Final dominant points are 109 35 107 113 48 87 91 90 83 68 78 81 77 35 101 WARN: Defaulting to equidistant control points INFO: Selected control points are 109 35 107 115 61 86 91 90 83 66 65 84 77 35 101 INFO: Distances between consecutive points are 34 38 35 36 INFO: Selected control points in test subject's space are 36 11 15 38 19 11 32 26 11 26 20 11 29 12 13 INFO: Distances between consecutive points in test subject's space are 9 9 8 9 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 17 INFO: Minimum allowable curvature at a dominant point is 0.0417578 INFO: Points where local peeks in curvature occur are 117 56 85 (curv = 0.0543567) 118 64 86 (curv = 0.0757503) 103 85 82 (curv = 0.0522158) 100 86 81 (curv = 0.0498809) 82 88 82 (curv = 0.0651084) 68 79 82 (curv = 0.0549835) 62 65 84 (curv = 0.0603134) 63 60 84 (curv = 0.0535248) 70 45 88 (curv = 0.0526417) INFO: Intermediate dominant points are 106 35 95 118 64 86 82 88 82 63 60 84 75 34 106 INFO: Final dominant points are 106 35 95 118 64 86 82 88 82 63 60 84 75 34 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 35 95 117 67 85 87 88 81 63 63 84 75 34 106 INFO: Distances between consecutive points are 35 37 35 38 INFO: Selected control points in test subject's space are 35 12 12 38 20 11 31 26 11 26 19 11 28 11 15 INFO: Distances between consecutive points in test subject's space are 9 9 9 9 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 120 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0511123 INFO: Points where local peeks in curvature occur are 107 44 92 (curv = 0.087122) 116 58 88 (curv = 0.0695819) 117 63 89 (curv = 0.0851157) 114 72 91 (curv = 0.0747905) 99 86 86 (curv = 0.0676846) 80 86 86 (curv = 0.0573832) 64 71 91 (curv = 0.0807566) 62 65 88 (curv = 0.0732678) INFO: Intermediate dominant points are 98 36 109 107 44 92 117 63 89 64 71 91 73 42 92 INFO: Final dominant points are 98 36 109 107 44 92 117 63 89 64 71 91 73 42 92 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 109 114 55 88 101 85 86 70 77 89 73 42 92 INFO: Distances between consecutive points are 33 33 32 35 INFO: Selected control points in test subject's space are 34 12 15 37 17 11 34 25 12 27 23 12 28 14 12 INFO: Distances between consecutive points in test subject's space are 7 9 7 9 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 120 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0446757 INFO: Points where local peeks in curvature occur are 119 60 86 (curv = 0.0912039) 117 67 87 (curv = 0.0712764) 105 82 83 (curv = 0.0475593) 83 86 82 (curv = 0.0637274) 61 65 86 (curv = 0.0955179) INFO: Intermediate dominant points are 105 37 93 119 60 86 83 86 82 61 65 86 75 37 102 INFO: Final dominant points are 105 37 93 119 60 86 83 86 82 61 65 86 75 37 102 INFO: Selected control points are 105 37 93 119 63 85 84 88 83 62 64 85 75 37 102 INFO: Distances between consecutive points are 31 43 33 34 INFO: Selected control points in test subject's space are 35 13 12 38 19 11 30 26 11 25 20 11 28 12 14 INFO: Distances between consecutive points in test subject's space are 7 11 8 9 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 209.76 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 265 streamlines for straying off mask INFO: Rejected 248 streamlines for reversing direction INFO: Rejected 23 streamlines as length outliers INFO: Have 14090 total streamlines (min/mean/max length: 52/85/110) Processing pathway 8 of 18... Matching streamline ends INFO: Have 9879 non-truncated streamlines (min/mean/max length: 54/86/114) INFO: Center of mass of start points: (103+/-5, 186+/-6, 73+/-12) INFO: Center of mass of midpoints: (90+/-2, 152+/-3, 75+/-3) INFO: Center of mass of end points: (79+/-5, 187+/-6, 74+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 50164 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0555586 INFO: Points where local peeks in curvature occur are 108 168 70 (curv = 0.0795061) 97 154 72 (curv = 0.0680763) 88 152 73 (curv = 0.0744459) 69 172 70 (curv = 0.0934483) INFO: Intermediate dominant points are 108 186 79 108 168 70 88 152 73 69 172 70 76 192 70 INFO: Final dominant points are 108 186 79 108 168 70 88 152 73 69 172 70 76 192 70 INFO: Selected control points are 108 186 79 108 167 69 88 152 73 69 171 70 76 192 70 INFO: Distances between consecutive points are 21 25 27 22 INFO: Selected control points in test subject's space are 36 50 14 36 46 11 31 42 11 27 47 11 29 52 12 INFO: Distances between consecutive points in test subject's space are 5 6 6 5 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 298.448 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 129 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 8935 total streamlines (min/mean/max length: 31/59/87) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3469 non-truncated streamlines (min/mean/max length: 39/67/85) INFO: Center of mass of start points: (115+/-12, 178+/-10, 73+/-13) INFO: Center of mass of midpoints: (106+/-3, 135+/-2, 78+/-6) INFO: Center of mass of end points: (97+/-3, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 34982 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0494057 INFO: Points where local peeks in curvature occur are 115 170 73 (curv = 0.104882) 113 160 72 (curv = 0.0503669) 111 154 74 (curv = 0.0533401) 112 146 77 (curv = 0.0969033) INFO: Intermediate dominant points are 109 187 72 115 170 73 112 146 77 105 134 76 99 116 77 INFO: Final dominant points are 109 187 72 115 170 73 112 146 77 100 125 75 99 116 77 INFO: Selected control points are 109 187 72 114 169 71 111 146 76 100 126 75 99 116 77 INFO: Distances between consecutive points are 19 24 23 10 INFO: Selected control points in test subject's space are 36 51 12 37 46 12 37 41 12 34 36 11 34 33 11 INFO: Distances between consecutive points in test subject's space are 5 5 6 3 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 91.196 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 51 streamlines as length outliers INFO: Have 7647 total streamlines (min/mean/max length: 32/62/88) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3073 non-truncated streamlines (min/mean/max length: 44/69/90) INFO: Center of mass of start points: (68+/-10, 184+/-10, 79+/-12) INFO: Center of mass of midpoints: (72+/-4, 136+/-2, 79+/-5) INFO: Center of mass of end points: (82+/-3, 115+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 31997 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0471385 INFO: Points where local peeks in curvature occur are 65 165 74 (curv = 0.0991141) 68 156 74 (curv = 0.0808319) 69 143 81 (curv = 0.0973737) INFO: Intermediate dominant points are 72 187 79 65 165 74 69 152 76 69 143 81 83 118 80 INFO: Final dominant points are 72 187 79 65 165 74 69 152 76 69 143 81 83 118 80 INFO: Selected control points are 72 187 79 66 165 75 68 152 76 70 143 80 83 118 80 INFO: Distances between consecutive points are 23 13 10 28 INFO: Selected control points in test subject's space are 28 51 14 26 45 12 27 42 12 27 40 13 30 33 12 INFO: Distances between consecutive points in test subject's space are 7 3 2 8 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 77.393 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 68 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2958 total streamlines (min/mean/max length: 3/42/88) Processing pathway 11 of 18... Matching streamline ends INFO: Have 758 non-truncated streamlines (min/mean/max length: 22/52/88) INFO: Center of mass of start points: (110+/-6, 83+/-16, 74+/-17) INFO: Center of mass of midpoints: (110+/-3, 94+/-8, 59+/-6) INFO: Center of mass of end points: (114+/-5, 113+/-19, 46+/-14) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 14245 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0231316 INFO: Points where local peeks in curvature occur are 105 80 74 (curv = 0.0287035) 114 103 48 (curv = 0.0238269) 116 114 41 (curv = 0.0661566) INFO: Intermediate dominant points are 106 64 96 105 80 74 111 94 58 116 114 41 119 131 36 INFO: Final dominant points are 106 64 96 105 80 74 114 104 47 116 114 41 119 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 64 96 105 76 78 110 92 60 115 109 43 119 131 36 INFO: Distances between consecutive points are 22 25 25 23 INFO: Selected control points in test subject's space are 35 19 13 35 23 10 36 28 6 37 33 3 38 39 2 INFO: Distances between consecutive points in test subject's space are 5 6 6 6 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0215239 INFO: Points where local peeks in curvature occur are 116 107 44 (curv = 0.0520351) 106 82 69 (curv = 0.030983) 105 79 74 (curv = 0.0273185) 105 73 81 (curv = 0.0219347) INFO: Intermediate dominant points are 119 131 36 116 107 44 110 93 59 106 82 69 107 64 96 INFO: Final dominant points are 119 131 36 116 107 44 110 92 60 106 82 69 107 64 96 WARN: Defaulting to equidistant control points INFO: Selected control points are 119 131 36 117 111 42 111 94 57 105 78 76 107 64 96 INFO: Distances between consecutive points are 21 23 26 24 INFO: Selected control points in test subject's space are 38 39 2 38 33 2 37 28 5 35 24 9 36 19 13 INFO: Distances between consecutive points in test subject's space are 6 6 6 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0203782 INFO: Points where local peeks in curvature occur are 118 115 42 (curv = 0.0284163) 116 106 45 (curv = 0.0549184) 106 82 69 (curv = 0.0237838) 105 79 74 (curv = 0.0315092) INFO: Intermediate dominant points are 119 131 36 116 106 45 110 92 60 105 79 74 107 64 96 INFO: Final dominant points are 119 131 36 116 106 45 108 87 65 105 79 74 107 64 96 WARN: Defaulting to equidistant control points INFO: Selected control points are 119 131 36 118 112 42 111 94 57 105 78 75 107 64 96 INFO: Distances between consecutive points are 20 24 25 25 INFO: Selected control points in test subject's space are 38 39 2 38 34 2 37 28 5 35 24 9 36 19 13 INFO: Distances between consecutive points in test subject's space are 5 7 6 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 79 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0310635 INFO: Points where local peeks in curvature occur are 102 75 86 (curv = 0.0765636) 103 81 76 (curv = 0.0333856) 115 113 40 (curv = 0.111023) INFO: Intermediate dominant points are 110 70 97 102 75 86 110 94 58 115 113 40 113 127 32 INFO: Final dominant points are 110 70 97 102 75 86 112 103 49 115 113 40 113 127 32 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 70 97 103 80 78 110 93 59 114 112 40 113 127 32 INFO: Distances between consecutive points are 23 24 27 17 INFO: Selected control points in test subject's space are 36 21 14 35 24 10 36 28 6 37 34 2 37 38 1 INFO: Distances between consecutive points in test subject's space are 5 6 7 4 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 78 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0330299 INFO: Points where local peeks in curvature occur are 101 74 85 (curv = 0.0855395) 116 108 42 (curv = 0.0946657) 119 116 42 (curv = 0.0530757) INFO: Intermediate dominant points are 107 70 100 101 74 85 109 91 60 116 108 42 119 126 37 INFO: Final dominant points are 107 70 100 101 74 85 112 100 51 116 108 42 119 126 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 70 100 102 76 82 108 91 61 116 106 43 119 126 37 INFO: Distances between consecutive points are 20 26 25 21 INFO: Selected control points in test subject's space are 36 20 15 35 23 11 36 28 6 38 32 2 38 37 2 INFO: Distances between consecutive points in test subject's space are 5 7 6 5 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0277413 INFO: Points where local peeks in curvature occur are 102 76 88 (curv = 0.0646039) 103 78 82 (curv = 0.0292293) 104 83 74 (curv = 0.0384958) 116 112 39 (curv = 0.0591929) INFO: Intermediate dominant points are 107 65 106 102 76 88 104 83 74 116 112 39 115 128 31 INFO: Final dominant points are 107 65 106 102 76 88 104 83 74 116 112 39 115 128 31 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 107 65 106 102 77 85 108 90 64 115 107 44 115 128 31 INFO: Distances between consecutive points are 25 25 27 25 INFO: Selected control points in test subject's space are 36 19 16 35 23 11 36 27 7 37 32 3 37 38 0 INFO: Distances between consecutive points in test subject's space are 6 6 6 7 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0266155 INFO: Points where local peeks in curvature occur are 102 75 91 (curv = 0.0633778) 104 81 76 (curv = 0.0280245) INFO: Intermediate dominant points are 107 65 106 102 75 91 104 81 76 113 102 49 120 119 41 INFO: Final dominant points are 107 65 106 102 75 91 104 81 76 116 109 42 120 119 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 65 106 102 75 88 106 85 70 112 100 52 120 119 41 INFO: Distances between consecutive points are 21 21 24 23 INFO: Selected control points in test subject's space are 36 19 16 35 22 12 35 26 8 37 30 4 39 35 2 INFO: Distances between consecutive points in test subject's space are 5 6 6 6 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0251853 INFO: Points where local peeks in curvature occur are 102 75 91 (curv = 0.0661055) 107 87 67 (curv = 0.0290894) INFO: Intermediate dominant points are 106 72 102 102 75 91 107 87 67 113 102 50 120 119 41 INFO: Final dominant points are 106 72 102 102 75 91 107 87 67 116 109 42 120 119 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 72 102 102 76 85 107 87 68 112 101 51 120 119 41 INFO: Distances between consecutive points are 18 21 23 22 INFO: Selected control points in test subject's space are 35 21 15 35 23 11 36 26 8 37 31 4 39 35 2 INFO: Distances between consecutive points in test subject's space are 4 4 6 5 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0272806 INFO: Points where local peeks in curvature occur are 102 76 89 (curv = 0.0632332) 103 80 79 (curv = 0.0283016) 116 112 39 (curv = 0.0753333) INFO: Intermediate dominant points are 107 65 106 102 76 89 109 92 63 116 112 39 115 128 31 INFO: Final dominant points are 107 65 106 102 76 89 113 102 50 116 112 39 115 128 31 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 65 106 102 76 86 108 90 64 115 107 44 115 128 31 INFO: Distances between consecutive points are 23 27 27 25 INFO: Selected control points in test subject's space are 36 19 16 35 23 11 36 27 7 37 32 3 37 38 0 INFO: Distances between consecutive points in test subject's space are 6 6 6 7 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 74 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0265517 INFO: Points where local peeks in curvature occur are 102 75 89 (curv = 0.0716452) 108 87 67 (curv = 0.0271192) 111 97 54 (curv = 0.0323898) INFO: Intermediate dominant points are 107 65 106 102 75 89 107 86 68 111 97 54 121 119 41 INFO: Final dominant points are 107 65 106 102 75 89 108 89 65 111 97 54 121 119 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 65 106 102 75 88 107 86 69 112 101 51 121 119 41 INFO: Distances between consecutive points are 21 23 24 22 INFO: Selected control points in test subject's space are 36 19 16 35 22 12 36 26 8 37 31 4 39 35 2 INFO: Distances between consecutive points in test subject's space are 5 6 6 5 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.026811 INFO: Points where local peeks in curvature occur are 110 91 61 (curv = 0.03408) 115 112 40 (curv = 0.0956488) INFO: Intermediate dominant points are 103 74 85 106 86 70 110 91 61 115 112 40 117 126 38 INFO: Final dominant points are 103 74 85 107 86 69 110 91 61 115 112 40 117 126 38 INFO: Selected control points are 103 74 85 106 87 69 110 92 60 114 111 41 117 126 38 INFO: Distances between consecutive points are 21 11 27 16 INFO: Selected control points in test subject's space are 35 22 11 35 26 8 36 28 6 37 34 2 38 37 2 INFO: Distances between consecutive points in test subject's space are 5 3 7 3 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 29.958 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 586 streamlines for straying off mask INFO: Rejected 58 streamlines for reversing direction INFO: Rejected 8 streamlines as length outliers INFO: Have 2394 total streamlines (min/mean/max length: 13/40/92) Processing pathway 12 of 18... Matching streamline ends INFO: Have 375 non-truncated streamlines (min/mean/max length: 31/55/94) INFO: Center of mass of start points: (69+/-5, 79+/-7, 80+/-10) INFO: Center of mass of midpoints: (66+/-2, 100+/-1, 55+/-2) INFO: Center of mass of end points: (63+/-4, 125+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 13887 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0352368 INFO: Points where local peeks in curvature occur are 66 115 41 (curv = 0.0791607) INFO: Intermediate dominant points are 72 79 78 71 90 65 67 100 52 66 115 41 61 122 40 INFO: Final dominant points are 72 79 78 70 95 58 66 109 42 66 115 41 61 122 40 INFO: Selected control points are 72 79 78 70 95 58 65 108 43 66 115 41 61 122 40 INFO: Distances between consecutive points are 26 20 7 9 INFO: Selected control points in test subject's space are 28 24 10 27 29 6 26 33 3 26 35 2 25 36 2 INFO: Distances between consecutive points in test subject's space are 6 5 2 1 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Writing spline volume to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 16.086 sec. Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /Applications/Freesurfer5.3/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 55 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 4061 total streamlines (min/mean/max length: 28/65/135) Processing pathway 13 of 18... Matching streamline ends INFO: Have 650 non-truncated streamlines (min/mean/max length: 60/89/135) INFO: Center of mass of start points: (100+/-5, 79+/-7, 104+/-8) INFO: Center of mass of midpoints: (97+/-1, 125+/-3, 104+/-2) INFO: Center of mass of end points: (100+/-4, 165+/-7, 82+/-7) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 17922 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0271115 INFO: Points where local peeks in curvature occur are 100 98 104 (curv = 0.0374787) 97 104 105 (curv = 0.0616425) 97 117 106 (curv = 0.031548) 98 123 105 (curv = 0.0567911) 97 129 103 (curv = 0.0352834) 98 148 92 (curv = 0.0367197) INFO: Intermediate dominant points are 102 83 99 97 104 105 98 123 105 98 148 92 101 166 80 INFO: Final dominant points are 102 83 99 97 104 105 98 123 105 98 148 92 101 166 80 INFO: Selected control points are 102 83 99 98 104 105 97 124 105 98 148 93 101 166 80 INFO: Distances between consecutive points are 22 20 27 22 INFO: Selected control points in test subject's space are 35 24 15 34 29 17 33 34 18 34 40 16 34 45 14 INFO: Distances between consecutive points in test subject's space are 5 5 6 5 Writing output files to /BrainLabDocs/studies/nicotine_mj_ecstasy_study/data/MRI/N1064/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_* dmri_train(44276) malloc: *** mmap(size=159744) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug MRIalloc(218, 182, 182): could not allocate 158704 bytes for 98th slice Cannot allocate memory Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 trac-preproc exited with ERRORS at Tue Dec 3 16:51:49 CST 2013