External Email - Use Caution

Hi, I am trying to run tracula, but I have this error:

[shiraz:sub-esq-01-en] (nmr-stable53-env) trac-all -prep -c dmrirc-sub-esq-01-en

INFO: SUBJECTS_DIR is /autofs/cluster/neuromod/rivas/imagenes/processing

INFO: Diffusion root is /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en

Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0

INFO: FreeSurfer build stamps do not match

Subject Stamp: freesurfer-Linux-centos7_x86_64-stable-v6-20161229-80ac5eb

Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

INFO: current FREESURFER_HOME does not match that of previous processing.

Current: /usr/local/freesurfer/stable5_3_0

Previous: /usr/local/freesurfer/stable6

trac-preproc -c /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/scripts/dmrirc.local -log /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/scripts/trac-all.log -cmd /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/scripts/trac-all.cmd

#-------------------------------------

/usr/local/freesurfer/stable5_3_0/bin/trac-preproc

#-------------------------------------

#@# Image corrections Fri Oct 18 09:29:48 EDT 2019

mri_convert /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/esq-01-en_dwi.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.nii.gz

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/esq-01-en_dwi.nii.gz...

TR=0.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-0.978979, -0.0979427, -0.178907)

j_ras = (-0.0632554, 0.979704, -0.190207)

k_ras = (-0.193905, 0.174892, 0.965305)

writing to /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.nii.gz...

cp /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/38567200_bvecs /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.mghdti.bvecs

cp /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/38567200_bvals /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.mghdti.bvals

flip4fsl /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig_flip.nii.gz

INFO: input image orientation is LAS

INFO: input image determinant is -10.3297

fslswapdim /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.nii.gz x y z /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig_flip.nii.gz

fslorient -forceradiological /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig_flip.nii.gz

INFO: found /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.mghdti.bvals, converting to FSL format

INFO: found /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig.mghdti.bvecs, converting to FSL format

mv -f /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig_flip.mghdti.bvecs /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvecs

mv -f /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig_flip.mghdti.bvals /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvals

eddy_correct /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_orig_flip.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz 0

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0000

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0001

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0002

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0003

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0004

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0005

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0006

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0007

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0008

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0009

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0010

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0011

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0012

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0013

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0014

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0015

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0016

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0017

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0018

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0019

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0020

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0021

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0022

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0023

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0024

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0025

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0026

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0027

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0028

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0029

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0030

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0031

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0032

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0033

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0034

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0035

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0036

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0037

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0038

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0039

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0040

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0041

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0042

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0043

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0044

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0045

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0046

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0047

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0048

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0049

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0050

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0051

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0052

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0053

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0054

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0055

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0056

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0057

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0058

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0059

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0060

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0061

processing /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_tmp0062

mv -f /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvecs /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvecs.norot

xfmrot /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.ecclog /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvecs.norot /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvecs

ln -sf /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/data.nii.gz

mri_convert --frame 0 /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame0.nii.gz

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz...

TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-0.978979, -0.0979427, -0.178907)

j_ras = (-0.0632554, 0.979704, -0.190207)

k_ras = (-0.193905, 0.174892, 0.965305)

keeping frame 0

writing to /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame0.nii.gz...

mri_convert --frame 1 /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame1.nii.gz

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz...

TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-0.978979, -0.0979427, -0.178907)

j_ras = (-0.0632554, 0.979704, -0.190207)

k_ras = (-0.193905, 0.174892, 0.965305)

keeping frame 1

writing to /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame1.nii.gz...

mri_convert --frame 2 /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame2.nii.gz

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz...

TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-0.978979, -0.0979427, -0.178907)

j_ras = (-0.0632554, 0.979704, -0.190207)

k_ras = (-0.193905, 0.174892, 0.965305)

keeping frame 2

writing to /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame2.nii.gz...

mri_convert --frame 3 /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame3.nii.gz

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz...

TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-0.978979, -0.0979427, -0.178907)

j_ras = (-0.0632554, 0.979704, -0.190207)

k_ras = (-0.193905, 0.174892, 0.965305)

keeping frame 3

writing to /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame3.nii.gz...

mri_concat --i /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame0.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame1.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame2.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi_frame3.nii.gz --mean --o /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb.nii.gz

ninputs = 4

Checking inputs

nframestot = 4

Allocing output

Done allocing

nframes = 4

Computing mean across frames

Writing to /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb.nii.gz

bet /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb_brain.nii.gz -m -f 0.5

mv -f /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb_brain_mask.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/diff

#-------------------------------------

#@# Inter-subject registration Fri Oct 18 09:57:04 EDT 2019

flirt -in /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb_brain.nii.gz -ref /usr/pubsw/packages/fsl/5.0.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/lowb_brain_mni.nii.gz -omat /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/xfms/diff2mni.mat -cost corratio

convert_xfm -omat /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/xfms/mni2diff.mat -inverse /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/xfms/diff2mni.mat

#-------------------------------------

#@# Masks Fri Oct 18 09:57:39 EDT 2019

ln -sf /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/diff/lowb_brain_mask.nii.gz /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/nodif_brain_mask.nii.gz

#-------------------------------------

#@# Tensor fit Fri Oct 18 09:57:39 EDT 2019

dtifit -k /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dwi.nii.gz -m /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/diff/lowb_brain_mask.nii.gz -r /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvecs -b /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/bvals -o /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dtifit

0 130 0 130 0 44

0 slices processed

1 slices processed

2 slices processed

3 slices processed

4 slices processed

5 slices processed

6 slices processed

7 slices processed

8 slices processed

9 slices processed

10 slices processed

11 slices processed

12 slices processed

13 slices processed

14 slices processed

15 slices processed

16 slices processed

17 slices processed

18 slices processed

19 slices processed

20 slices processed

21 slices processed

22 slices processed

23 slices processed

24 slices processed

25 slices processed

26 slices processed

27 slices processed

28 slices processed

29 slices processed

30 slices processed

31 slices processed

32 slices processed

33 slices processed

34 slices processed

35 slices processed

36 slices processed

37 slices processed

38 slices processed

39 slices processed

40 slices processed

41 slices processed

42 slices processed

43 slices processed

#-------------------------------------

#@# Priors Fri Oct 18 09:57:50 EDT 2019

/usr/local/freesurfer/stable5_3_0/bin/dmri_train --outdir /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.sub-esq-01-en.4921.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/mni/lowb_brain_mask.bbr.nii.gz --fa /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dtifit_FA.nii.gz --cptdir /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/diff --reg /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc

ERROR: fio_pushd: /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/mni

cwd /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en

cmdline /usr/local/freesurfer/stable5_3_0/bin/dmri_train --outdir /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.sub-esq-01-en.4921.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/mni/lowb_brain_mask.bbr.nii.gz --fa /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/dtifit_FA.nii.gz --cptdir /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/diff --reg /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc

sysname Linux

hostname shiraz.nmr.mgh.harvard.edu

machine x86_64

user ji733

Output directory: /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/mni

Output directory in test subject's space: /autofs/cluster/neuromod/rivas/imagenes/processing/sub-esq-01-en/sub-esq-01-en/dlabel/diff

Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr

Training subject directory list: /tmp/subj33.sub-esq-01-en.4921.txt

Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk

Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz

Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz

Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz

Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0

Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz

Brain mask for output subject: Segmentation fault (core dumped)

Linux shiraz.nmr.mgh.harvard.edu 3.10.0-957.1.3.el7.x86_64 #1 SMP Thu Nov 29 14:49:43 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux

trac-preproc exited with ERRORS at Fri Oct 18 09:57:50 EDT 2019

Ihave dlabel/mni folder. Could you please gimme some light about it?

Thanks,