Dear Bruce,

I first used the example command line from the wiki: mri_annotation2label --subject LW \ --hemi rh --outdir ./labels(on my own subject) and then used

mri_mergelabels -i lh.entorhinal.label -i lh.cuneus.label -o test.label

I use Freesurfer 5.1 on Linux system. Are commands incorrect any stage? If so could you direct please me to correct ones?

Kind Regards, Linn

On Mon, Mar 25, 2013 at 12:51 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Linn
can you send us the exact command line and screen output, and also what version and software/hardware environment you are running in?

cheers
Bruce

On Mon, 25 Mar 2013, Linn Mittlestein wrote:

Dear Freesurfer experts,

I have a question about trying to extract statistics from merged labels using mris_anatomical_stats. I have used
the mri_annotation2label, and then the mri_merge label, however now when trying to do mris_anatomical stats, I
get the error ; could not read input volume, eg Freesurfer cannot read the wm.mgz file. What step have I done
wrong?

Thank you very much,

Kind Wishes, Linn

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