On Sat, May 5, 2012 at 10:09 PM, keepmoon <
keepmoon1224@googlemail.com> wrote:
> Hi Michael and Alex,
>
> Thanks for your suggestion about my question!
>
> I am trying to install Pysurfer to solve my problem (load multiple
> overlays with different colors). I have already installed all the software
> following the instruction (three software (1) epd-7.2-2-macosx-i386.dmg; (2)
> setuptools-0.6c11-py2.7.egg (md5); (3) python-2.7.3-macosx10.3.dmg).
>
>
>
> Now I test Pysurfer using command:
>
> Pysurfer fsaverage lh inflated
>
> It doesn’t work. The error is:
>
>
>
> % pysurfer fsaverage lh inflated
>
> Traceback (most recent call last):
>
> File "/Library/Frameworks/Python.framework/Versions/2.7/bin/pysurfer",
> line 5, in <module>
>
> pkg_resources.run_script('pysurfer==0.3', 'pysurfer')
>
> File
> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg/pkg_resources.py",
> line 489, in run_script
>
> File
> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg/pkg_resources.py",
> line 1207, in run_script
>
> File
> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pysurfer-0.3-py2.7.egg/EGG-INFO/scripts/pysurfer",
> line 9, in <module>
>
> from surfer._commandline import parser
>
> File
> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pysurfer-0.3-py2.7.egg/surfer/__init__.py",
> line 2, in <module>
>
> from viz import Brain, TimeViewer
>
> File
> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pysurfer-0.3-py2.7.egg/surfer/viz.py",
> line 19, in <module>
>
> from enthought.traits.api import (HasTraits, Range, Int, Float, \
>
> ImportError: No module named enthought.traits.api
>
>
>
> Then I tried to install enthought.traits.api.
>
> % easy_install enthought.traits.api
>
> Searching for enthought.traits.api
>
> Reading
http://pypi.python.org/simple/enthought.traits.api/
>
> Couldn't find index page for 'enthought.traits.api' (maybe misspelled?)
>
> Scanning index of all packages (this may take a while)
>
> Reading
http://pypi.python.org/simple/
>
> No local packages or download links found for enthought.traits.api
>
> error: Could not find suitable distribution for
> Requirement.parse('enthought.traits.api')
>
>
>
> I didn’t find suitable answer to this question. Could you give me some
> suggestions?
>
>
>
> Thanks
>
>
>
> Kathy
>
>
>
>
>
>
>
>
>
> On Wed, May 2, 2012 at 6:32 PM, Michael Waskom <
mwaskom@stanford.edu> wrote:
>>
>> Hi,
>>
>> If you're somewhat handy with Python, you can use PySurfer for this.
>> See this example:
>>
http://pysurfer.github.com/auto_examples/plot_fmri_conjunction.html
>>
>> Best,
>> Michael
>>
>> On Wed, May 2, 2012 at 7:51 AM, keepmoon <
keepmoon1224@googlemail.com>
>> wrote:
>> > Dear all,
>> >
>> > I search my question before I post it. I did find similar questions, but
>> > didn't find answer. I want to overlay two files with different colors.
>> > For
>> > example, one is sig1.mgh from cortical thickness, the other is sig2.mgh
>> > from
>> > area. I want to use tksurfer overlaying them with three colors: red is
>> > significant regions of thickness; blue is significant regions of area;
>> > green
>> > is overlap significant regions of thickness and area.
>> >
>> > I tried to use the following command:
>> >
>> > tksurfer fsaverage lh inflated -annot aparc.annot -fthresh 2 -overlay
>> > sig1.mgh -overlay sig2.mgh
>> >
>> > It just can display sig1.mgh or sig2.mgh, but can't display two
>> > together. In
>> > addition, I don't know how to control overlap and other regions color.
>> >
>> > Anyone knows how to do this?
>> >
>> > Any help will be appreciated!
>> >
>> > Thanks in advance!
>> >
>> > Kathy
>> >
>> > _______________________________________________
>> > Freesurfer mailing list
>> >
Freesurfer@nmr.mgh.harvard.edu
>> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >
>> >
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>