I'm attempting to produce an automated segmentation of the hippocampal substructures and the nuclei of the amygdala (see hippocampal module https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala).

When I try to run the segmentHA_T1.sh SUBJECT_ID [SUBJECTS_DIR] command with the dev version of freesurfer, I keep getting this error:

I've tried setting the MCR_CACHE_ROOT env variable to somewhere under my user directory.

Does anyone have any suggestions on how this can be fixed?

Thank you in advance,

Pascale