On Thu, Apr 20, 2023 at 9:19 AM Huang, Yujing <YHUANG43@mgh.harvard.edu> wrote:

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Hi Carlos,

mri_concat concatenates input .mgz files.

The following command will output C.mgz with A.mgz as the first frame, and B.mgz as the second frame, assuming both A and B have only one frame.

mri_concat --i A.mgz --i B.mgz --o C.mgz

I’m not sure that is what you are looking for.

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Carlos Alcocer
Sent: Wednesday, April 19, 2023 1:02 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] creating average labels

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Good afternoon,

I would like to verify that the subcallosal cingulate cortex (SCC) segmentation of my subjects are correct. I want to do this by creating an average label of the left SCC and an average label of the right SCC which I can then map onto each subject.

If I save these labels from each subject as a volume (.mgz) and then run mri_concat on the left SCC labels (.mgz) and then on the right SCC labels (.mgz), would this accomplish my desired goal?

Tks,

Carlos

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