Dr. Greve,

I don't believe that file exists--fsaverage folder was empty. We re-ran these files through v7.2.1 while seeking solutions. Is it going to produce tenable findings if we run Freesurfer v7.2.1 cross-sectional data through Freesurfer's v6.0's longitudinal stream? 

Best,

Andrew

---

From: Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu>
Sent: Wednesday, February 16, 2022 10:37 AM
To: Willett, Andrew Sunday <awillett@bwh.harvard.edu>; Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Longitudinal Stream Error

 

Does that file exist?
ps. Please remember to post to the list. Thanks!

On 2/15/2022 5:06 PM, Willett, Andrew Sunday wrote:

Dr. Greve, 

 

I hope this email finds you well. Thank you for your response to my listed question on Freesurfer’s mailing list on Sunday! I wanted to reach out to followup re: longitudinal stream error. 

The main error I receive with the base code is as follows: 

 

SUBJECTS_DIR    /PHShome/asw39/subjects

FREESURFER_HOME /PHShome/asw39/freesurfer

Loading source label.

Invalid argument

ERROR reading /PHShome/asw39/subjects/fsaverage/label/lh.BA1_exvivo.label

Linux rgs10.research.partners.org 2.6.32-696.28.1.el6.x86_64 #1 SMP Thu Apr 26 04:27:41 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s MSA12 exited with ERRORS at Tue Nov 30 20:43:37 EST 2021

We got this error after we used Freesurfer v6.0 to process the data cross-sectionally and then run the base template. Do you know whether it is possible for v7.0 cross-sectional output to be run through v6.0 longitudinal stream (as v6.0 is the most recent longitudinal stream version)?

Thanks,

Andee Sunday Willett, M.S.

Pronouns: they/them

Research Assistant II

Department of Neurology, Division of Movement Disorders

Brigham and Women’s Hospital

awillett@bwh.harvard.edu
brighamandwomens.org