Do you have any thoughts on this? Is this a bug (either in the stored .annot or during the reading process)?

Thanks for sharing your thoughts,

Best,

Martijn

On Thu, Dec 22, 2011 at 1:20 PM, Thomas Yeo <ythomas@csail.mit.edu> wrote:

Hi, I am not sure if your question is about read_annotation or
aparc.annot in particular.

read_annotation.m reads the labels embedded in the annotation file you
passed to it. The labels embedded in the annotation file may or may
not be the same as those in FreeSurferColorLUT.

I could be wrong, but in the case of aparc.annot generated by
recon-all, I don't think the labels correspond to those in
FreeSurferColorLUT.

--Thomas

On Thu, Dec 22, 2011 at 6:23 PM, Martijn Steenwijk
<martijnsteenwijk@gmail.com> wrote:
> Dear all,
>
> I'm trying to read aparc.annot into Matlab using the
> matlab/read_annotation.m function. Is it correct that the labels read by
> this function do not correspond with for example the FreeSurferColorLUT?
>
> Are the labels stored as 16 bit (unsigned)integers, or in another way?
>
> Best,
> Martijn
>

> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>