# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.20 2006/07/31 21:56:54 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --subject St5-Rescan --ctab /Applications/freesurfer/ASegStatsLUT.txt # anatomy_type volume # # BrainMaskFile mri/brainmask.mgz # BrainMaskFileTimeStamp 2007/19/10 15:49:01 # Measure BrainMask, BrainMaskNVox, Number of Brain Mask Voxels, 1767972, unitless # Measure BrainMask, BrainMaskVol, Brain Mask Volume, 1767972.000000, mm^3 # Measure BrainSeg, BrainSegNVox, Number of Brain Segmentation Voxels, 1419930, unitless # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1419930.000000, mm^3 # Measure IntraCranialVol, ICV, Intracranial Volume, 1418598.542711, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2007/20/10 02:25:35 # ColorTable /Applications/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2006/30/09 13:45:29 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2007/19/10 16:35:29 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2007/19/10 16:35:29 # ExcludeSegId 0 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 48 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 2 258032 258032.0 Left-Cerebral-White-Matter 108.5969 7.9733 35.0000 192.0000 157.0000 2 3 319891 319891.0 Left-Cerebral-Cortex 82.2331 11.0305 31.0000 181.0000 150.0000 3 4 6403 6403.0 Left-Lateral-Ventricle 45.5700 12.5943 19.0000 88.0000 69.0000 4 5 795 795.0 Left-Inf-Lat-Vent 56.7010 16.0756 23.0000 98.0000 75.0000 5 7 17463 17463.0 Left-Cerebellum-White-Matter 94.6489 7.2514 41.0000 125.0000 84.0000 6 8 57382 57382.0 Left-Cerebellum-Cortex 77.9218 11.1002 28.0000 196.0000 168.0000 7 10 7420 7420.0 Left-Thalamus-Proper 96.5092 8.6714 58.0000 121.0000 63.0000 8 11 3078 3078.0 Left-Caudate 93.4770 9.2975 56.0000 125.0000 69.0000 9 12 5248 5248.0 Left-Putamen 95.2749 6.5034 61.0000 115.0000 54.0000 10 13 1114 1114.0 Left-Pallidum 111.6038 8.2461 89.0000 131.0000 42.0000 11 14 1345 1345.0 3rd-Ventricle 52.4789 11.3651 21.0000 85.0000 64.0000 12 15 2594 2594.0 4th-Ventricle 48.8474 8.3808 27.0000 77.0000 50.0000 13 16 20586 20586.0 Brain-Stem 90.9104 10.9212 34.0000 117.0000 83.0000 14 17 4937 4937.0 Left-Hippocampus 80.7524 8.3257 43.0000 108.0000 65.0000 15 18 1704 1704.0 Left-Amygdala 81.3604 7.5608 50.0000 106.0000 56.0000 16 24 2118 2118.0 CSF 60.6056 13.7005 24.0000 101.0000 77.0000 17 26 669 669.0 Left-Accumbens-area 85.8443 6.3001 63.0000 114.0000 51.0000 18 28 4007 4007.0 Left-VentralDC 96.5894 10.9231 49.0000 124.0000 75.0000 19 30 78 78.0 Left-vessel 76.4930 12.2636 50.0000 102.0000 52.0000 20 31 0 0.0 Left-choroid-plexus 0.0000 0.0000 0.0000 0.0000 0.0000 21 41 276320 276320.0 Right-Cerebral-White-Matter 110.4005 8.2597 44.0000 170.0000 126.0000 22 42 315288 315288.0 Right-Cerebral-Cortex 84.0824 10.8264 0.0000 178.0000 178.0000 23 43 9241 9241.0 Right-Lateral-Ventricle 45.3153 13.4594 19.0000 98.0000 79.0000 24 44 222 222.0 Right-Inf-Lat-Vent 57.0602 12.7758 29.0000 95.0000 66.0000 25 46 13535 13535.0 Right-Cerebellum-White-Matter 95.4856 5.8509 50.0000 140.0000 90.0000 26 47 59673 59673.0 Right-Cerebellum-Cortex 81.4773 10.7986 32.0000 170.0000 138.0000 27 49 6949 6949.0 Right-Thalamus-Proper 96.2021 9.3082 52.0000 121.0000 69.0000 28 50 4103 4103.0 Right-Caudate 89.4463 8.7990 51.0000 113.0000 62.0000 29 51 4891 4891.0 Right-Putamen 101.4397 6.5465 73.0000 118.0000 45.0000 30 52 1816 1816.0 Right-Pallidum 114.0245 5.7157 95.0000 131.0000 36.0000 31 53 5000 5000.0 Right-Hippocampus 78.1196 9.1730 45.0000 104.0000 59.0000 32 54 1528 1528.0 Right-Amygdala 81.2189 6.9702 56.0000 101.0000 45.0000 33 58 799 799.0 Right-Accumbens-area 87.0969 5.5732 64.0000 104.0000 40.0000 34 60 4659 4659.0 Right-VentralDC 97.7320 11.2039 48.0000 128.0000 80.0000 35 62 68 68.0 Right-vessel 76.8214 11.8799 53.0000 99.0000 46.0000 36 72 118 118.0 5th-Ventricle 62.7755 7.0001 46.0000 82.0000 36.0000 37 77 0 0.0 WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 38 78 1257 1257.0 Left-WM-hypointensities 81.1010 16.4823 34.0000 117.0000 83.0000 39 79 911 911.0 Right-WM-hypointensities 81.9619 13.5290 32.0000 110.0000 78.0000 40 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 41 81 5 5.0 Left-non-WM-hypointensities 66.5714 11.9004 49.0000 85.0000 36.0000 42 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 43 85 301 301.0 Optic-Chiasm 76.6491 13.5073 44.0000 104.0000 60.0000 44 251 0 0.0 CC_Posterior 0.0000 0.0000 0.0000 0.0000 0.0000 45 252 0 0.0 CC_Mid_Posterior 0.0000 0.0000 0.0000 0.0000 0.0000 46 253 0 0.0 CC_Central 0.0000 0.0000 0.0000 0.0000 0.0000 47 254 0 0.0 CC_Mid_Anterior 0.0000 0.0000 0.0000 0.0000 0.0000 48 255 0 0.0 CC_Anterior 0.0000 0.0000 0.0000 0.0000 0.0000