What  happens when your run 3dvolreg.afni by itself (no options) from the command line?

On 10/25/2022 4:41 PM, Gillian Grennan wrote:

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Hello FreeSurfer Developers, 

I downloaded MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be Freesurfer v7.3.2 [secure-web.cisco.com] onto my local drive and am attempting to run preprocessing through FSFAST. I wasn't able to get access to the .tar.gz Darwin file but downloaded Xquartz, Freesurfer, FSL, and Matlab individually and was able to source Freesurfer using the following commands: 

export FREESURFER_HOME=/Applications/freesurfer/7.3.2

export PROJECT_DIR=/Users/angelafang/Library/CloudStorage/OneDrive-UW/VicExt

export SUBJECTS_DIR=$PROJECT_DIR/subjects

source $FREESURFER_HOME/SetUpFreeSurfer.sh

However, when I run preproc-sess in my analysis folder I get the following error: 

command: preproc-sess -sf subjectlist -fsd bold -stc siemens -surface fsaverage lhrh -mni305 -fwhm 5 -per-run

error message: 

++ Initializing alignment base

Choleski factorization failure in startup_lsqfit

mri_startup_lsqfit: bad call to startup_lsqfit!

++ Starting final pass on 44 sub-bricks: 0

Fatal Signal 11 (SIGSEGV) received

   mri_3dalign_one

  3dvolreg main

 Bottom of Debug Stack

** AFNI version = AFNI_2011_12_21_1014  Compile date = May 22 2013

** [[Precompiled binary macosx_10.7_Intel_64: May 22 2013]]

** Program Abort **

** If you report this crash to the AFNI message board,

** please copy the error messages EXACTLY, and give

** the command line you used to run the program, and

** any other information needed to repeat the problem.

** You may later be asked to upload data to help debug.

ERROR: 3dvolreg.afni

Invalid null command.

I'm confused on what more I need to install? Is there a way I can get an updated link to the tar file with the relevant software packages needed to run FSFAST? 

Best,

Gillian Grennan

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