From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Justin Oh
Sent: Wednesday, January 25, 2023 12:19 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] FS FAST

My bash profile currently sets up my freesurfer environment with each terminal. Should I also be exporting matlab into my environment and define a path to the application? If so what should i include in my bash profile. 

I have not idea, try it and see.

On 1/25/2023 9:25 AM, Justin Oh wrote:

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Is the student version of MATLAB enough to run in the background? Our institution does not provide a license unfortunately. I tried using octave but i can't seem to get octave to work. 

 

Best,
Justin Oh

 

On Thu, Jan 12, 2023 at 9:38 AM Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

Just the basic is ok. Although I have not done it in a while, you should also be able to use octave (which is free). Once you get octave install and in your path, set the env variable FS_USE_OCTAVE to 1. Like I said, I have not used it in a while, but it I think it should still work.

On 1/11/2023 9:31 AM, Justin Oh wrote:

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Dear Freesurfer team, 

 

I am new to freesurfer and I'm working on learning how to pre process and analyze resting state fMRI. It's my understanding that MATLAB and FSL have to run in the background from what I took away from online tutorials. Is there a specific program within MATLAB that is necessary or will purchasing the basic student package from MATLAB be sufficient? 

 

Thank you for your time!

-Justin Oh

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