On Mon, 2013-01-28 at 18:19 +0000, Tudor Popescu wrote:
> Dear Nick,
>
> I was wondering whether you (or indeed anyone else reading this!) know
> where the error that I report earlier in this thread might be coming
> from. Many thanks in advance!
>
> Tudor
>
> On 20 December 2012 05:27, Douglas Greve <
greve@nmr.mgh.harvard.edu>
> wrote:
> Hi Tudor, I don't know how to solve this problem. Maybe Nick
> knows.
> doug
>
>
> On 12/19/12 6:59 AM, Tudor Popescu wrote:
>
> > Hi Doug, thanks for replying, here is the file attached. In
> > case the attachment doesn't go through please let me know
> > if I should send it to a different address.
> > Tudor
> >
> > On 18 December 2012 17:34, Douglas N Greve
> > <
greve@nmr.mgh.harvard.edu> wrote:
> >
> > Can you send the recon-all.log file (located in the
> > subject/scripts folder).
> > doug
> >
> >
> > On 12/18/2012 11:41 AM, Tudor Popescu wrote:
> > > Hello,
> > >
> > > First of all, apologies for asking for help three
> > times today! THings
> > > will hopefully become clearer once I get used to
> > FS a bit; I really do
> > > appreciate the amazing support provided by the
> > team behind FreeSurfer!
> > >
> > > I ran the following command on one of my
> > structurals:
> > >
> >
> > > /recon-all -subject M01 -i M01.nii.gz -all/
> > >
> > > After a few minutes, recon-all ended with the
> > following message:
> > >
> >
> > > /Assertion failed at line 827 in file
> > templates/CachedArray.cc/
> > > /nu_estimate_np_and_em: crashed while running
> > volume_stats
> > > (termination status=256)/
> > > /nu_correct: crashed while running
> > nu_estimate_np_and_em (termination
> > > status=256)/
> > > /ERROR: nu_correct/
> > > /Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP
> > Fri Apr 17 01:57:59
> > > UTC 2009 i686 GNU/Linux/
> > >
> > > I apologise for reporting an error that's already
> > been reported in the
> > > past, but unfortunately the solutions suggested in
> > those past threads
> > > did not work in my case. To address a few of them:
> > >
> >
> > > * my PATH (listed below) does not seem to
> > include two MNI installations
> > >
> > //home/virtualuser/freesurfer/bin:/home/virtualuser/freesurfer/fsfast/bin:/home/virtualuser/freesurfer/tktools:/home/virtualuser/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games/
> > > * the version of FreeSurfer that I installed is
> > the latest disk
> > > image available on the website
> > >
> > (freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full) - I did
> > > not see any dev version that would presumably
> > include any missing
> > > libraries presumably implied by the above
> > error
> > > * I tried updating the Xubuntu inside my
> > VirtualBox, however it
> > > reports an insufficient space problem that
> > from I can see does not
> > > have a trivial fix
> > >
> > > Advance thanks for any help!
> > > Tudor
> > >
> > >
> >
> > > _______________________________________________
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> > >
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> > >
> >
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> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> >
greve@nmr.mgh.harvard.edu
> > Phone Number: 617-724-2358
> > Fax: 617-726-7422
> >
> > Bugs:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> > FileDrop:
> >
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> > Outgoing:
> >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> >
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