Hi Bruce

Thanks for your reply.
Well, two of my subjects have this problem. I have two subjects with correct flattened maps and for 3 other subjects "the mris_flatten"  is still running.
I attached the directory and I would appreciate if you could please take a look.

Thanks
MOna


Zahra (Mona) Nasiriavanaki

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129



From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Sent: Friday, November 8, 2019 11:54 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] flat maps in native space
 
Hi Mona

that is pretty strange looking. Is the data somewhere local that we can
take a look at it? I would guess that one of the cuts left a connection
around, but would need to look at it to tell. Have you flattened other
subjects successfully?

cheers
Bruce


On Fri, 8 Nov 2019, Nasiriavanaki, Zahra
wrote:

> Hi Freesurfer experts
>
> I was trying to make flat maps for individual subjects, following instruction
> in https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferOccipitalFlattenedPatch.
> For some of my subjects, the flat maps are distorted (attached image).
> Please let me know what you think.
>
> Thanks
> Mona
>
> [IMAGE]
>
> Zahra (Mona) Nasiriavanaki
>
> Postdoctoral Research Fellow
>
> Martinos Center for Biomedical Imaging
>
> Massachusetts General Hospital
>
> 149 13th Street, 149-2615
>
> Charlestown, MA, USA, 02129
>
>
>
>
>