It seems that this command doesn't accept input files. Are there any commands in Freesurfer that can do similar job?
-------- Original Message --------
Subject: Re: [Freesurfer] BA Labels
Local Time: September 13, 2017 3:11 PM
UTC Time: September 13, 2017 7:11 PM
From: fischl@nmr.mgh.harvard.edu
To: John Anderson <John.anderso@protonmail.com>
Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
you should be able to use mris_anatomical_stats I believe
cheers
Bruce
On Wed, 13 Sep
2017, John Anderson wrote:
> Thank you Dr Bruce,
> The stat values for every BA are generated using the command mris_anatomical_stats. I found this
> command in the stats file for one of the BAs.
> In this stats file I see values for gray matter volume, thickness ,... etc.
>
> If I move SUV map or FA map to surface using the command mri_vol2surf. Then how can I generate the
> SUV and FA values from the BA labels similar to what the command mris_anatomical_stats does?
>
>
> -------- Original Message --------
> Subject: Re: [Freesurfer] BA Labels
> Local Time: September 13, 2017 2:57 PM
> UTC Time: September 13, 2017 6:57 PM
> From: fischl@nmr.mgh.harvard.edu
> To: John Anderson <John.anderso@protonmail.com>, Freesurfer support list
> <freesurfer@nmr.mgh.harvard.edu>
>
> Hi John
>
> if you have run recon-all you should have a bunch of ex vivo BA labels in
> the label dir.
>
> cheers
> Bruce
> On Wed, 13 Sep 2017, John Anderson wrote:
>
> > Dear FS experts,
> > I have SUV maps for subjects within two groups. I moved these SUV maps into surface then I
> > concatenated the images in the order of two groups then I used the compiled file in a glm
> analysis
> > to check the difference between the two groups.
> >
> > I aim to use V1 Atlas to derive the SUV values from the BA labels. I am not sure how to
> utilize
> > these labels in such analysis. In this context I have two questions:
> >
> > 1. Can these label be converted to ROIs similar to the ROIs derived from wmpar.mgz using the
> command
> > mri_binarize?
> >
> > 2. in WIKI it was mentioned that the command "recon-all -s subjid -label_v1" output the stat
> values
> > for every BA label. How can I derive similar stats from the SUV maps in the compiled file.
> >
> >
> > Thanks in advance
> > John
> >
> >
>
>
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