Hi Hengameh,

It looks like you missed ‘-all’ option at the end.

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of hmarzban@student.ubc.ca
Sent: Monday, April 3, 2023 5:32 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Issue with running recon-all on Synthsr output

        External Email - Use Caution        

Dear developers,

I recently ran Synthsr on one of my images and now I am attempting to run recon-all.

The output states that it finished without any errors in just 0.006 hours, but I am unable to proceed with the processing.

Have any of you encountered this issue before? I would greatly appreciate your recommendations on how to proceed.

(I am confident that there are no issues with the Freesurfer version and recon-all, as I have successfully run a 3T MP-RAGE image)

Thank you

Hengameh