Martin,

That is the point.  I have edited the hippocampus in the -long 2 times and the recon does not maintain my edits. 

I would love any help to changes I should be making to my recon statement to maintain my edits.

Rebecca

Hi Rebecca,

aseg edits to subcortical structures need to be done in the -long
stage.
(see here: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits
)
Best, Martin



On Thu, 2018-09-06 at 14:37 -0700, Rebecca Ray wrote:
>         External Email - Use Caution        
> HELP
> ---------- Forwarded message ----------
> From: Rebecca Ray <rayr5 at gene.com>
> Date: Thu, Sep 6, 2018 at 12:05 PM
> Subject: longitudinal hippocampal aseg editing
> To: freesurfer at nmr.mgh.harvard.edu
> 
> 
> I have 2 time points on 60 subjects with most being in some form of
> AD.  There are considerable differences in hippocampal volume between
> time points.  I edited the raw images before making the template. I
> then had to edit the aseg template image and there were still
> problems on the -long images.  I tried to edit and rerun autorecon2-
> noaseg and autorecon3 and it does not appear to be keeping my edits.
> 
> What am I doing wrong?
> 
> Rebecca
> 
> _______________