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This is Vishal Mohanty, a Research Assistant at the CNS Lab at Stanford which is headed by Prof. Kilian Pohl. We are running Freesurfer commands for processing of our MRI data on Sherlock which is the HPC cluster at Stanford. We are seeing some errors in running mri_gcut of the type:

CREATE LAB_S01450/standard/20161207_2762_12072016/structural/original/stripped/voting/gcut_t1b_brain.nii.gz

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error: No such file or directory

error: Could not set locale^@

I'm attaching the full log file. Could you please help me understand what's the issue and how to fix it. Do let me know what other information would be needed from my end.

Thanks and Regards

Vishal Mohanty

MS CS Candidate (2023)

Stanford University