You can try,
mri_convert --in_orientation PIR t1_flip.nii t1_flip_flip.nii
but I'm not promising anything

On 2/14/2020 11:03 AM, Miguel Ángel Rivas Fernández wrote:

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Dear Douglas, 

My image is in the correct orientation. The reason is that am using a software to detect brain lesions that only works in left hemisphere and my subject have the lesion in the right hemisphere. I tried it with the following command and it works

mri_convert --in_orientation PIL t1.nii t1_flip.nii

Now I would like to come back to the original orientation, which command should I use?

Thanks in advance.

Best regards, 

El vie., 14 feb. 2020 a las 16:01, Douglas N. Greve (<dgreve@mgh.harvard.edu>) escribió:

Is the image in the wrong orientation (ie, is it not truly in PIR) or do you want to change the orientation? doing a left-right swap is more than changing the orientation

On 2/11/2020 4:06 PM, Miguel Ángel Rivas Fernández wrote:

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Dear Freesurfer experts,

Which command should I use to flip the left-right orientation of a T1 image?. Actually my image is in PIR orientation, I used the following command

mri_info --orientation '/home/rmn/Desktop/study/E03/3d/coanat_E03.nii'

PIR

Thanks in advance,

Best regards,

--

Miguel Ángel Rivas Fernández

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Miguel Ángel Rivas Fernández

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