> Date: Thu, 13 Mar 2014 15:15:23 -0400
> From: greve@nmr.mgh.harvard.edu
> To: dusanhirjak@hotmail.com; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Extracting thickness, area and folding values from Qdec
>
> are you puttting it in quotes? If so, don't
> doug
>
> On 03/13/2014 01:46 PM, Dusan Hirjak wrote:
> > Dear Doug,
> >
> > I typed 1.3 but it is still not working.
> >
> > Any other ideas???
> >
> > Thanks for your help.
> >
> > DH
> >
> > > Date: Thu, 13 Mar 2014 12:20:57 -0400
> > > From: greve@nmr.mgh.harvard.edu
> > > To: freesurfer@nmr.mgh.harvard.edu
> > > Subject: Re: [Freesurfer] Extracting thickness, area and folding
> > values from Qdec
> > >
> > > Use 1.3 not 1,3
> > >
> > > doug
> > > On 03/13/2014 10:12 AM, Dusan Hirjak wrote:
> > > > Dear Freesurfer Experts,
> > > >
> > > > I did a correlational analysis in qdec and found several significant
> > > > clusters after Monte-Carlo simulation (0.05).
> > > > Now, I would like to extract the mean cortical thickness, area and
> > > > folding values (peak maximum) of each study subject above the
> > > > significant cluster.
> > > >
> > > > I tried to run "mri_glmfit-sim --glmdir mc-z.neg.th13.pdf.dat --cache
> > > > "1,3" --sim-sign neg"
> > > >
> > > > However, I got the ERROR: thresh = 1.3 not completely converted
> > > >
> > > > What am I doing wrong? Any other ideas?
> > > >
> > > > Is the pdf.dat file the right one to use???
> > > >
> > > > Thanks!
> > > >
> > > > DH
> > > >
> > > >
> > > >
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> > >
> > > --
> > > Douglas N. Greve, Ph.D.
> > > MGH-NMR Center
> > > greve@nmr.mgh.harvard.edu
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> > > Fax: 617-726-7422
> > >
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>