The command I used is:

mktemplate-sess -s $SUBJECT -df sessdirfile -fsd bold_retino

mc-sess -s $SUBJECT -df sessdirfile -fsd bold_retino -per-session

Thank you.

Best,
Ji Won



2016-03-03 12:22 GMT-05:00 Ji Won Bang <kirstens03@gmail.com>:
Dear. freesurfer experts.

Hi. I'm using freesurfer version 5.3.0.

I tried mc-sess onto runs that have different number of slices.

However, due to this different number of slices in different runs, mc-sess gives an error.

I expected that running mc-sess in freesurfer version 5.3.0 would handle this issue.

If you can share your idea to fix this problem, that would be a great help.

Thank you!

Best,
Ji Won