Dear Tracula developers,

I posted a problem with tracula when I ran

trac-all -stat -c  dmrirc_ind_mni_cvs_all_stats.all

I receive this error message

Loading output reference volume from

/home/spj24/app/freesurfer/subjects/cvs_avg35

corRead(): can't open file

/home/spj24/app/freesurfer/subjects/cvs_avg35/COR-.info

ERROR: Could not read /home/spj24/app/freesurfer/subjects/cvs_avg35

There is no file called COR-.info in the directory

/home/spj24/app/freesurfer/subjects/cvs_avg35/

I have now changed the lines in the configuration file

set doregcvs = 1
 
# CVS template subject ID
# Only used if doregcvs = 1
# Default: cvs_avg35
#
#set cvstemp = donald
set cvstemp = cvs_avg35
 
set cvstempdir = $FREESURFER_HOME/subjects
 
to
 
set doregcvs = 1
set cvstemp = cvs_avg35/mri/brainmask.mgz
set cvstempdir = $FREESURFER_HOME/subjects

i.e. explicitly pointing to an image in the cvs_avg35 directory and the stats seem to complete without error.

Is that the right thing to do?

Thanks for your help,

Simon