Dear Zeke,
Thank you so much. As I am not sure which is the log file that we use I am attaching mri_nu (in mri directory) and talairach_avi (in mri/transformations directory).
Thanks,
Pablo

> Date: Fri, 13 Dec 2013 16:21:48 -0500
> From: zkaufman@nmr.mgh.harvard.edu
> To: pablonajt@hotmail.com
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Output of recon-all -all -openmp 8 does not show brainmask.mgz
>
> Hello Pablo,
>
> Please send me the recon-all.log file for the subject and I will take a
> look.
>
> -Zeke
>
> On 12/13/2013 03:41 PM, pablo najt wrote:
> > Dear FS,
> > I am checking on the outputs of recon-all -all using the flag -openmp 8.
> > As I did with standard recon-all -all comand line I was trying to check
> > brainmask.mgz, but there is not such file. Is there anything wrong with
> > my outputs? Or I should be checking a different file?
> > Thank you,
> > Pablo
> >
> >
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>
>
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