Have you tried running the defect-seg script? It creates annotations of the defects. Look at the --help
doug

On 1/24/14 1:03 AM, Chris Adamson wrote:

Is there a way of making a volume like aparc+aseg with the defect labels so that cortical region where the defects are show up red?

Dr Chris Adamson
Research Officer, Developmental Imaging, Murdoch Childrens Research Institute
Murdoch Childrens Research Institute
Royal Children’s Hospital
Flemington Road, Parkville, Victoria  3052, Australia
www.mcri.edu.au

E   chris.adamson@mcri.edu.au
T   03 9936 6780

______________________________________________________________________
This email has been scanned by the Symantec Email Security.cloud service.
For more information please visit http://www.symanteccloud.com
______________________________________________________________________
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer