Hi Doug - Look for the explanation of the reinit variable all the way at the end of the sample config file. You add "set reinit =1" to the config file, set the pathlist and subjlist to only the specific tract and subject that you want to rerun, and then rerun the -prior and -path steps.

Hope this helps,
a.y

From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas Merkitch [Douglas_Merkitch@rush.edu]
Sent: Thursday, December 08, 2016 11:27 AM
To: Freesurfer support list
Subject: [Freesurfer] TRACULA - RH ILF Issue

Hello Freesurfer experts,

I've finished processing a subject through the TRACULA pipeline (freesurfer-Darwin-OSX-stable-v6-beta-20161116-5037eae), and I'm getting a weird result for the right inferior longitudinal fasciculus (see screenshots). I don't think this is just a display issue? I do know that you would most likely need more information from me, but I'm not sure what you will need.

Any help would be appreciated!

Thanks,

Doug

Douglas Merkitch

Neurological Sciences

Rush University Medical Center
Phone: (312) 563-3853
Fax: (312) 563-4660
Email: Douglas_Merkitch@rush.edu