Hi Richard, the conclusion among us is that you have run out of memory. I'm not sure how much you will need, but with both hires and FLAIR, it will be a lot

On 5/21/2020 9:35 AM, Jones, Richard wrote:

External Email - Use Caution

I ran freesurfer 7.1 with the following options:-

-i ./study/T1_SAG/IM-0001-0001.dcm -FLAIR ./study/SAG_3D_FLAIR/IM-0001-0001.dcm -s TEST_050620 -3T –mprage –FLAIRpial –hires –parallel –all

The job failed, the logfile recon-all_hires.log is attached. I then reran the job with the same datasets but exchanged –hires with –conf2hires and used the subject ID TEST_050620c and the job completed successfully (the logfile for this job, recon-all_conf2hires.log, is also attached). Any idea what the problem is when using the –hires option?

Thanks

Richard
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer