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Hello Lupita,

Although the 8.0.0 release has not yet been officially announced, you could try downloading it from the link listed below.

I would first remove your existing beta install with,

$ cd /Applications/freesurfer/8.0.0-beta
$ sudo bash uninstall.sh
… answer Y to uninstall ...

Then download the package installer via this link and run it.
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/8.0.0/freesurfer-macOS-darwin_arm64-8.0.0.pkg
Then you should end up with /Applications/freesurfer/8.0.0 and use that for FREESURFER_HOME

Please let us know if you run into any issues.

- R

On Feb 11, 2025, at 14:42, Yanez-Ramos, Lupita <Yanez-Ramos.MariaGuadalupe@mayo.edu> wrote:

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Good to know, I am waiting for the new release.
 
Thank you,
 
Lupita
 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edu>
Date: Tuesday, February 11, 2025 at 13:38
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [EXTERNAL] Re: [Freesurfer] Recon-all error - release 8.0.0-beta

The new version will be announced  in the next couple of days.
 
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Yanez-Ramos, Lupita
Sent: Tuesday, February 11, 2025 2:31 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Recon-all error - release 8.0.0-beta
 

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Hello Yujing,
 
Thank you for your response.
 
“There are no details of the error message in the log.”
 
In the terminal the error message is:
2 root error(s) found.
  (0) INVALID_ARGUMENT:  input must be 4-dimensional[1,72,72,72,24]
                [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
                [[unet/unet_bn_down_0/FusedBatchNormV3/_16]]
  (1) INVALID_ARGUMENT:  input must be 4-dimensional[1,72,72,72,24]
                [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
0 successful operations.
0 derived errors ignored. [Op:__inference_predict_function_1146]
ERROR:
Darwin r5523400.mayo.edu 24.3.0 Darwin Kernel Version 24.3.0: Thu Jan  2 20:24:22 PST 2025; root:xnu-11215.81.4~3/RELEASE_ARM64_T6041 arm64
 
recon-all -s sub-01 exited with ERRORS at Tue Feb 11 13:12:04 CST 2025
I can’t see any other information, Only the log that I attached in the las email and the info in the terminal.
I attached the terminal text.
 
Does your error look something like this?
  (0) INVALID_ARGUMENT:  input must be 4-dimensional[1,72,72,72,24]
                [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
                [[unet/unet_merge_4/concat/_64]]
  (1) INVALID_ARGUMENT:  input must be 4-dimensional[1,72,72,72,24]
                [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
 
Yes it is.
 
If so, we fixed the error in the coming FS 8.0 release.
Just I used this version, is there other release? How can I have the fixed release?
<image001.png>
 
Thank you,
 
Lupita
 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edu>
Date: Tuesday, February 11, 2025 at 12:36
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [EXTERNAL] Re: [Freesurfer] Recon-all error - release 8.0.0-beta

There are no details of the error message in the log.
 
Does your error look something like this?
  (0) INVALID_ARGUMENT:  input must be 4-dimensional[1,72,72,72,24]
                [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
                [[unet/unet_merge_4/concat/_64]]
  (1) INVALID_ARGUMENT:  input must be 4-dimensional[1,72,72,72,24]
                [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
 
If so, we fixed the error in the coming FS 8.0 release.
 
Yujing
 
 
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Yanez-Ramos, Lupita
Sent: Tuesday, February 11, 2025 1:23 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Recon-all error - release 8.0.0-beta
 

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From: Yanez-Ramos, Lupita <Yanez-Ramos.MariaGuadalupe@mayo.edu>
Date: Tuesday, February 11, 2025 at 11:53
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Recon-all error - release 8.0.0-beta

Hello FreeSurfer Developers,
 
I'm attempting to run recon-all and recon-all-clinical, but it is the first time that I used this since I changed my MacBook.
 
ERROR:
Darwin R5523400.local 24.3.0 Darwin Kernel Version 24.3.0: Thu Jan  2 20:24:22 PST 2025; root:xnu-11215.81..4~3/RELEASE_ARM64_T6041 arm64
recon-all -s sub-01 exited with ERRORS at Tue Feb 11 10:33:15 CST 2025
 
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
 
1) FreeSurfer version: FreeSurfer version 8.0.0-beta MacOS X darwin_arm64 (64b) PKG installer 
2) Platform: macOs Sequoia 15.3. Chip Apple M4 Max
3) uname -a: Darwin r5523400.mayo.edu 24.3.0 Darwin Kernel Version 24.3.0: Thu Jan  2 20:24:22 PST 2025; root:xnu-11215.81.4~3/RELEASE_ARM64_T6041 arm64
4) recon-all.log: see attached
 
Thank you so much, I really need to use recon-all to complete my project.
 
Have a great day,
 
Lupita
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