Hi Doug

I have uploaded the label_aalf.mnc and testsurfaceoverlay.mgz

Here is an example of the mri_vol2surf that I use

trisanna@kaplan:~$ mri_vol2surf --mov /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc --o /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz --hemi lh --surf pial --regheader icbm-113
srcvol = /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
srcreg unspecified
srcregold = 0
srcwarp unspecified
surf = pial
hemi = lh
reshape = 0
interp = nearest
float2int = round
GetProjMax = 0
INFO: float2int code = 0
INFO: changing type to float
Done loading volume
Computing registration from header.
Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz as target reference.
Reading surface /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
Done reading source surface
Mapping Source Volume onto Source Subject Surface
1 0 0 0
using old
Done mapping volume to surface
Number of source voxels hit = 53960
Writing to /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
Dim: 159741 1 1

When I open this in Freeview, the values are either 0 or 255. However, they were binary (0 or 1) in the label_aalf.mnc input file.

The mri_concat command that I ran on label_aalf for 20 hemispheres is:

trisanna@kaplan:~$ mri_concat /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/*.mgz --o /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz --mean
ninputs = 20
Checking inputs
nframestot = 20
Allocing output
Done allocing
nframes = 20
Computing mean across frames
Writing to /data-01/trisanna/freesurfer/fsaverage/committee_meeting/DISPLAY_overlays_fsaverage_left/aalf_lh/mri_concat_test.mgz

thanks

Trisanna

Ph.D. Candidate

McGill University

Integrated Program in Neuroscience

Psychology

On Tue, Nov 1, 2016 at 2:45 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

Can you send me the mri_concat command and also upload the input files
to our filedrop?

https://gate.nmr.mgh.harvard.edu/filedrop2

On 11/01/2016 02:31 PM, Trisanna Sprung-Much wrote:
> Does anyone know who wrote the script for mri_concat? I would really
> like to get this figured out.
>
> thanks
>
> Trisanna
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Fri, Oct 21, 2016 at 12:13 PM, Trisanna Sprung-Much
> <trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>> wrote:
>
> thanks Bruce - I had indeed used this months ago but at the
> workshop this semester Doug had suggested mri_concat as it is a
> newer command and also doesn't blur the data. I am just having
> problems creating percentage values with mri_concat.
>
> *Would you know why mri_vol2surf is taking a binary minc file and
> creating values ranging from 0-255 that mri_concat then preserves?*
>
> best
> Trisanna
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Fri, Oct 21, 2016 at 9:29 AM, Bruce Fischl
> <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>>
> wrote:
>
> Hi Trisanna
>
> not sure about mri_concat, but mri_average -noconform -p ...
> should do the trick
>
> cheers
> Bruce
> On Wed, 19 Oct 2016, Trisanna Sprung-Much wrote:
>
> Something weird is happening with mri_vol2surf - even
> though the data looks great, the values are odd
> which carries over when I try to average with mri_concat.
> I would just like to get percentage values
> with mri_concat.
> thanks!
>
> Trisanna
>
> --
> Ph.D. CandidateMcGill University
>
> Integrated Program in Neuroscience
> Psychology
>
>
> On Mon, Oct 17, 2016 at 5:21 PM, Trisanna Sprung-Much
> <trisanna.sprung-much@mail.mcgill.ca

> <mailto:trisanna.sprung-much@mail.mcgill.ca>> wrote:
> Hi Doug
>
> Here is what I ran:
>
> trisanna@kaplan:~$ mri_vol2surf --mov
> /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
> --o
> /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
> --hemi lh --surf pial --regheader
> icbm-113
> srcvol =
> /data-01/trisanna/freesurfer/icbm-113/label/label_aalf.mnc
> srcreg unspecified
> srcregold = 0
> srcwarp unspecified
> surf = pial
> hemi = lh
> reshape = 0
> interp = nearest
> float2int = round
> GetProjMax = 0
> INFO: float2int code = 0
> INFO: changing type to float
> Done loading volume
> Computing registration from header.
> Using /data-01/trisanna/freesurfer/icbm-113/mri/orig.mgz
> as target reference.
> Reading surface
> /data-01/trisanna/freesurfer/icbm-113/surf/lh.pial
> Done reading source surface
> Mapping Source Volume onto Source Subject Surface
> 1 0 0 0
> using old
> Done mapping volume to surface
> Number of source voxels hit = 53960
> Writing to
> /data-01/trisanna/freesurfer/icbm-113/testsurfaceoverlay.mgz
> Dim: 159741 1 1
>
> When I open this in Freeview, the values are either 0 or
> 255 (see attached image). However, they
> were binary (0 or 1) in the label_aalf.mnc input file...
>
> Trisanna
>
>
> --
> Ph.D. CandidateMcGill University
>
> Integrated Program in Neuroscience
> Psychology
>
>
> On Wed, Oct 12, 2016 at 2:09 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu

> <mailto:greve@nmr.mgh.harvard.edu>> wrote:
> Hmmm, I don't know what could be going on. Can you
> send the command line
> and all terminal output?
>
>
> On 10/06/2016 10:37 PM, Trisanna Sprung-Much wrote:
> > Hi Doug
> >
> > So the pixel values are 0 and 1 *in the original
> .mnc*. It seems that
> > after performing mri_vol2surf they become 0 and
> 255, and stay this way
> > after mri_surf2surf as well. So, why would
> mri_vol2surf be changing
> > the values?
> >
> > Trisanna
> >
> >
> >
> > --
> > Ph.D. Candidate
> > McGill University
> > Integrated Program in Neuroscience
> > Psychology
> >
> >
> > On Thu, Oct 6, 2016 at 11:30 AM, Douglas Greve
> > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
> >
> > What are the pixel values in the mgz file?
> They should be binary,
> > ie, 1=in a label, 0 = out of label
> >
> >
> > On 10/6/16 10:22 AM, Trisanna Sprung-Much wrote:
> >> Overlays in .mgz format using mri_vol2surf
> >>
> >> --
> >> Ph.D. Candidate
> >> McGill University
> >> Integrated Program in Neuroscience
> >> Psychology
> >>
> >>
> >> On Wed, Oct 5, 2016 at 5:56 PM, Douglas N Greve
> >> <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>

> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
> >>
> >> what is a labeled vertex? What file
> format? mgz? annot?
> >>
> >>
> >> On 10/05/2016 05:03 PM, Trisanna
> Sprung-Much wrote:
> >> > the source files are labelled vertices
> from 20 subjects:
> >> >
> >> > -T1s were labelled using an MNI software
> >> > -Surfaces were created in FreeSurfer
> and surface overlays
> >> of the
> >> > labels were created using mri_vol2surf
> >> > -Surface overlays were registered to
> fsaverage using
> >> mri_surf2surf and
> >> > then averaged to create a probability
> map, originally using
> >> "mri_average"
> >> >
> >> > So, essentially the overlays are binary
> files of my labels
> >> I believe
> >> > - I can send one over if you wish.
> >> >
> >> > Trisanna
> >> >
> >> >
> >> > --
> >> > Ph.D. Candidate
> >> > McGill University
> >> > Integrated Program in Neuroscience
> >> > Psychology
> >> >
> >> >
> >> > On Wed, Oct 5, 2016 at 4:52 PM, Douglas
> N Greve
> >> > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>

> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
> >> >
> >> > what are the source files ("all
> files"). What data
> >> type, value range,
> >> > where did they come from?
> >> >
> >> >
> >> > On 10/05/2016 04:48 PM, Trisanna
> Sprung-Much wrote:
> >> > > Hi Doug
> >> > >
> >> > > So, of course now it works
> without --keep-filetype...
> >> :p it looks
> >> > > pretty much the same was when I
> use --keep-filetype.
> >> > >
> >> > > However, the values of Min and
> Max are still odd (out
> >> of 256) - see
> >> > > snapshot
> >> > >
> >> > > Trisanna
> >> > >
> >> > >
> >> > >
> >> > >
> >> > >
> >> > > --
> >> > > Ph.D. Candidate
> >> > > McGill University
> >> > > Integrated Program in Neuroscience
> >> > > Psychology
> >> > >
> >> > >
> >> > > On Wed, Oct 5, 2016 at 4:23 PM,
> Douglas N Greve
> >> > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> >> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> >> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
> >> > >
> >> > > Depending upon the type of the
> data, the
> >> --keep-datatype may
> >> > mess
> >> > > things
> >> > > up quite a bit. What happens
> if you don't include
> >> that? It
> >> > will not
> >> > > create an annotation. maybe you
> mean some other
> >> file type?
> >> > >
> >> > >
> >> > > On 10/05/2016 02:36 PM,
> Trisanna Sprung-Much wrote:
> >> > > >
> >> > > > Hi Doug
> >> > > >
> >> > > > I spoke with you at the
> Freesurfer tutorial
> >> last week
> >> > about using
> >> > > > mri_average to average my
> sulcal labels and get a
> >> > probability map on
> >> > > > fsaverage. You had suggested
> using "mri_concat"
> >> instead,
> >> > which is a
> >> > > > newer command. So, I performed
> the following
> >> command:
> >> > > >
> >> > > > *mri_concat all files --o
> output.mgz --mean
> >> --keep-datatype*
> >> > > >
> >> > > > I had to put --keep-datatype
> or else it tried
> >> to create an
> >> > annot
> >> > > file.
> >> > > >
> >> > > > This worked just fine.
> >> > > >
> >> > > > My question then is concerning
> *the min and max
> >> values
> >> > *when this
> >> > > > average is overlayed in
> Freeview. See the snapshot
> >> > attached. The
> >> > > > values seem to be based on 256
> instead of
> >> percentage and
> >> > this is
> >> > > what
> >> > > > happens when I used
> "mri_average" without
> >> specifying the
> >> > "-p". Is
> >> > > > there a way to illustrate the
> values in
> >> percentage in a
> >> > similar way
> >> > > > with mri_concat?
> >> > > >
> >> > > > Many thanks!
> >> > > >
> >> > > > Trisanna
> >> > > >
> >> > > >
> >> > > > --
> >> > > > Ph.D. Candidate
> >> > > > McGill University
> >> > > > Integrated Program in Neuroscience
> >> > > > Psychology
> >> > > >
> >> > > >
> >> > > >
> >> > > >
> _______________________________________________
> >> > > > Freesurfer mailing list
> >> > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> >
> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> >> > >
> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> >
> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> >> > > >
> >> >
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >> >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
> >> > >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >> >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
> >> > >
> >> > > --
> >> > > Douglas N. Greve, Ph.D.
> >> > > MGH-NMR Center
> >> > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> >> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
> >> > > Phone Number:617-724-2358
> <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
> <tel:617-724-2358 <tel:617-724-2358>
> >> <tel:617-724-2358 <tel:617-724-2358>>>
> >> > <tel:617-724-2358
> <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
> <tel:617-724-2358 <tel:617-724-2358>

> >> <tel:617-724-2358 <tel:617-724-2358>>>>
> >> > > Fax: 617-726-7422
> <tel:617-726-7422> <tel:617-726-7422 <tel:617-726-7422>>
> >> <tel:617-726-7422 <tel:617-726-7422>
> <tel:617-726-7422 <tel:617-726-7422>>> <tel:617-726-7422

> <tel:617-726-7422>
> >> <tel:617-726-7422 <tel:617-726-7422>>
> >> > <tel:617-726-7422 <tel:617-726-7422>
> <tel:617-726-7422 <tel:617-726-7422>>>>
> >> > >
> >> > > Bugs:
> >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
> >> >
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
> >> > >
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
> >> >
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>>
> >> > > FileDrop:
> >> https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>
> >> >
> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
> >> > >
> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>
> >> >
> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>>>
> >> > >
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
> >> >
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
> >> > >
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
> >> >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>>
> >> > > Outgoing:
> >> > >
> >>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
> >> >
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
> >> > >
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
> >> >
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>>
> >> > >
> >> > >
> _______________________________________________
> >> > > Freesurfer mailing list
> >> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>

> >> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> >> > >
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >> >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
> >> > >
> >> >
> >>

> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >> >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
> >> > >
> >> > >
> >> > > The information in this e-mail is
> intended only
> >> for the
> >> > person to
> >> > > whom it is
> >> > > addressed. If you believe this e-mail
> was sent to
> >> you in
> >> > error and
> >> > > the e-mail
> >> > > contains patient information,
> please contact the
> >> Partners
> >> > > Compliance HelpLine at
> >> > > http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>
> >> <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>>
> >> > <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>
> >> <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>>>
> >> > >
> <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>
> >> <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>>
> >> > <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>
> >> <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>>>> . If the e-mail
> >> was sent
> >> > > to you in error
> >> > > but does not contain patient
> information, please
> >> contact the
> >> > > sender and properly
> >> > > dispose of the e-mail.
> >> > >
> >> > >
> >> > >
> >> > >
> >> > >
> _______________________________________________
> >> > > Freesurfer mailing list
> >> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> >> > >
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >> >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
> >> >
> >> > --
> >> > Douglas N. Greve, Ph.D.
> >> > MGH-NMR Center
> >> > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> >> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> >> > Phone Number: 617-724-2358
> <tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
> >> <tel:617-724-2358 <tel:617-724-2358>
> <tel:617-724-2358 <tel:617-724-2358>>>
> >> > Fax: 617-726-7422 <tel:617-726-7422>
> <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422
> <tel:617-726-7422>
> >> <tel:617-726-7422 <tel:617-726-7422>>>
> >> >
> >> > Bugs:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
> >> >
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
> >> > FileDrop:
> https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>
> >> >
> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>>
> >> >
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
> >> >
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
> >> > Outgoing:
> >> >
> >>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
> >> >
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
> >> >
> >> > _______________________________________________
> >> > Freesurfer mailing list
> >> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> >> >
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >> >
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
> >> >
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > Freesurfer mailing list
> >> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >> >
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >>
> >> --
> >> Douglas N. Greve, Ph.D.
> >> MGH-NMR Center
> >> greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> >> Phone Number: 617-724-2358 <tel:617-724-2358>
> <tel:617-724-2358 <tel:617-724-2358>>
> >> Fax: 617-726-7422 <tel:617-726-7422>
> <tel:617-726-7422 <tel:617-726-7422>>
> >>
> >> Bugs:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
> >> FileDrop:
> https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> >> <https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>>
> >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >>
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
> >> Outgoing:
> >>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> >>
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
> >>
> >> _______________________________________________
> >> Freesurfer mailing list
> >> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> >>
> >>
> >>
> >>
> >> _______________________________________________
> >> Freesurfer mailing list
> >> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >>
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> > _______________________________________________
> Freesurfer mailing
> > list Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>

> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> >
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
> The
> > information in this e-mail is intended only for the
> person to whom
> > it is addressed. If you believe this e-mail was sent
> to you in
> > error and the e-mail contains patient information,
> please contact
> > the Partners Compliance HelpLine at
> > http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>
> > <http://www.partners.org/complianceline
> <http://www.partners.org/complianceline>> . If the e-mail
> was sent
> > to you in error but does not contain patient
> information, please
> > contact the sender and properly dispose of the e-mail.
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >

> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> Phone Number: 617-724-2358 <tel:617-724-2358>
> Fax: 617-726-7422 <tel:617-726-7422>
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> <https://gate.nmr.mgh.harvard.edu/filedrop2>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
>

> The information in this e-mail is intended only for the person
> to whom it is
> addressed. If you believe this e-mail was sent to you in error
> and the e-mail
> contains patient information, please contact the Partners
> Compliance HelpLine at
> http://www.partners.org/complianceline
> <http://www.partners.org/complianceline> . If the e-mail was
> sent to you in error
> but does not contain patient information, please contact the
> sender and properly
> dispose of the e-mail.
>
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer