No one ever encountered this kind of full path problem?
recon-all works fine, but recon-all -qcache stopped because of this kind of problem.

Any hint would be appreciated.

Xiaowei


On Wed, Feb 20, 2013 at 5:07 PM, Xiaowei Song <dawnwei.song@gmail.com> wrote:
Dear Bruce and freesurfer experts,

I am trying to use mri_average_subjects, but encountered the error:
mghRead(/fullpath/surf/lh.inflated.H, -1): could not open file.
.

Then I tried
mri_info subject/surf/lh.inflated.H
, and it worked.

But when I tried 
mri_info $(readlink -f subject/surf/lh.inflated.H)
, the same error information is told.

Besides, I tried the same command to the downloaded buckner_data and no error happened.

How to fix this?


The following information is from bugr:
FREESURFER_HOME: /usr/local/freesurfer
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
RedHat release: Red Hat Enterprise Linux Server release 6.3 (Santiago)
Kernel info: Linux 2.6.32-279.22.1.el6.x86_64 x86_64


Thanks

--
Xiaowei Song



--
Xiaowei Song