Hi everyone!

Firstly - and most importantly - thank you for the awesome tool, and for all your help in using it!

I'm re-processing (and re-quality controll-ing) data that was formatted in v5.3 into v6 and I've come to re-running trac-all.

I've been using v6 with the updated Makefile (if anyone's googling this question, see the note at this page about the fact that v6 doesn't ship with the correct make file https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingDataV6.0#Tipsandgeneralquestions).

I wonder if a) there is a makefile for trac-all (that would be amazing) or b) you could tell me which files I need to delete so I re-process them now that the surfaces are updated? I assume the DTI processing hasn't changed, so I shouldn't need to change the bedpostx folder for example, but I'm not 100% sure on which other files have dependences on the reconstructions :)

(The surfaces got pretty messed up in this update so I'd like to go back to basics....without having to rerun things we KNOW aren't related to the surface reconstructions.)

Thank you!

Kirstie

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