Sat Sep 2 09:46:38 EDT 2023 cd /scratch/MPI-LEMON/freesurfer/subjects/sub-032336 setenv SUBJECTS_DIR /scratch/MPI-LEMON/freesurfer/subjects /scratch/MPI-LEMON/freesurfer/bin/recon-all -i pre_mri/sub-032336/ses-01/anat/denoised.nii -s sub-032336 -all subjid sub-032336 setenv SUBJECTS_DIR /scratch/MPI-LEMON/freesurfer/subjects FREESURFER_HOME /scratch/MPI-LEMON/freesurfer Actual FREESURFER_HOME /scratch/MPI-LEMON/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 Linux lina 5.15.0-82-generic #91-Ubuntu SMP Mon Aug 14 14:14:14 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 12180120 kbytes maxproc 380176 maxlocks unlimited maxsignal 380176 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 92Gi 863Mi 91Gi 4.0Mi 731Mi 91Gi Swap: 8.0Gi 0B 8.0Gi ######################################## program versions used 7.4.1 (freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460) 7.4.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:39-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 7.4.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:40-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:41-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.4.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/09/02-13:46:42-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: erikc Machine: lina Platform: Linux PlatformVersion: 5.15.0-82-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /scratch/MPI-LEMON/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /scratch/MPI-LEMON/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /scratch/MPI-LEMON/freesurfer/subjects/sub-032336 mri_convert /scratch/MPI-LEMON/MPI-LEMON-Connectivity/pre_mri/sub-032336/ses-01/anat/denoised.nii /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig/001.mgz mri_convert /scratch/MPI-LEMON/MPI-LEMON-Connectivity/pre_mri/sub-032336/ses-01/anat/denoised.nii /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig/001.mgz reading from /scratch/MPI-LEMON/MPI-LEMON-Connectivity/pre_mri/sub-032336/ses-01/anat/denoised.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig/001.mgz... @#@FSTIME 2023:09:02:09:46:43 mri_convert N 2 e 11.67 S 0.05 U 7.64 P 65% M 49924 F 0 R 11027 W 0 c 25 w 35 I 84488 O 29016 L 3.84 0.81 0.30 @#@FSLOADPOST 2023:09:02:09:46:54 mri_convert N 2 10.63 2.37 0.81 #-------------------------------------------- #@# MotionCor Sat Sep 2 09:46:55 EDT 2023 Found 1 runs /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig/001.mgz /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/rawavg.mgz mri_info /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/rawavg.mgz type: MGH dimensions: 176 x 240 x 256 voxel sizes: 0.999999, 1.000000, 1.000000 type: FLOAT (3) fov: 256.000 dof: 1 xstart: -88.0, xend: 88.0 ystart: -120.0, yend: 120.0 zstart: -128.0, zend: 128.0 TR: 0.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = -8.8082 : x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = -11.0521 : x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -2.5301 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 0.0000 0.0000 -96.8082 0.0000 1.0000 0.0000 -131.0521 0.0000 0.0000 1.0000 -130.5301 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 0.999999 ras to voxel transform: 1.0000 0.0000 0.0000 96.8082 0.0000 1.0000 0.0000 131.0521 0.0000 0.0000 1.0000 130.5301 0.0000 0.0000 0.0000 1.0000 /scratch/MPI-LEMON/freesurfer/subjects/sub-032336 mri_convert /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/rawavg.mgz /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz --conform mri_convert /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/rawavg.mgz /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz --conform reading from /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 4060 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz... @#@FSTIME 2023:09:02:09:46:59 mri_convert N 3 e 8.51 S 0.05 U 8.46 P 99% M 60484 F 0 R 21971 W 0 c 28 w 0 I 0 O 11760 L 11.86 2.76 0.94 @#@FSLOADPOST 2023:09:02:09:47:07 mri_convert N 3 17.42 4.25 1.45 mri_add_xform_to_header -c /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/transforms/talairach.xfm /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2023:09:02:09:47:07 mri_add_xform_to_header N 4 e 1.70 S 0.01 U 1.68 P 99% M 23688 F 0 R 4566 W 0 c 25 w 0 I 0 O 11760 L 17.42 4.25 1.45 @#@FSLOADPOST 2023:09:02:09:47:09 mri_add_xform_to_header N 4 17.42 4.25 1.45 mri_info /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz orig.mgz ======================================== Volume information for /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/orig.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 0.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = -8.8082 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -11.0521 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -2.5301 talairach xfm : /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 119.1918 0.0000 0.0000 1.0000 -139.0521 0.0000 -1.0000 0.0000 125.4699 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 119.1918 -0.0000 -0.0000 -1.0000 125.4699 -0.0000 1.0000 -0.0000 139.0521 -0.0000 -0.0000 -0.0000 1.0000 #-------------------------------------------- #@# Talairach Sat Sep 2 09:47:09 EDT 2023 /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri /scratch/MPI-LEMON/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.4.1 Linux lina 5.15.0-82-generic #91-Ubuntu SMP Mon Aug 14 14:14:14 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux Sat Sep 2 09:47:09 EDT 2023 tmpdir is ./tmp.mri_nu_correct.mni.18694 cd /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.18694/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.18694/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.18694/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.18694/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Sat Sep 2 09:52:48 EDT 2023 mri_nu_correct.mni done @#@FSTIME 2023:09:02:09:47:09 mri_nu_correct.mni N 12 e 338.83 S 0.29 U 338.48 P 99% M 520000 F 0 R 150544 W 0 c 280 w 105 I 0 O 23416 L 17.42 4.25 1.45 @#@FSLOADPOST 2023:09:02:09:52:48 mri_nu_correct.mni N 12 47.90 34.00 15.73 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... mv -f /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt Started at Sat Sep 2 09:52:48 EDT 2023 Ended at Sat Sep 2 09:53:26 EDT 2023 talairach_avi done @#@FSTIME 2023:09:02:09:52:48 talairach_avi N 4 e 38.03 S 1.21 U 30.81 P 84% M 255524 F 1 R 398572 W 0 c 83 w 192 I 0 O 295272 L 47.90 34.00 15.73 @#@FSLOADPOST 2023:09:02:09:53:26 talairach_avi N 4 42.54 34.47 16.67 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /scratch/MPI-LEMON/freesurfer/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.4.1 --src: orig.mgz src image (geometry). --trg: /scratch/MPI-LEMON/freesurfer/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 1.21730 -0.01575 -0.03080 11.84346; 0.00894 0.94283 0.52692 -6.70541; 0.03030 -0.50311 1.10120 -46.03311; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Sat Sep 2 09:53:28 EDT 2023 /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.4699, pval=0.1049 >= threshold=0.0050) @#@FSTIME 2023:09:02:09:53:28 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 100% M 6248 F 0 R 225 W 0 c 0 w 1 I 0 O 0 L 42.54 34.47 16.67 @#@FSLOADPOST 2023:09:02:09:53:28 talairach_afd N 4 42.54 34.47 16.67 awk -f /scratch/MPI-LEMON/freesurfer/bin/extract_talairach_avi_QA.awk /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/transforms/talairach_avi.log tal_QC_AZS /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/transforms/talairach_avi.log TalAviQA: 0.96698 z-score: -2 #-------------------------------------------- #@# Nu Intensity Correction Sat Sep 2 09:53:28 EDT 2023 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri /scratch/MPI-LEMON/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.4.1 Linux lina 5.15.0-82-generic #91-Ubuntu SMP Mon Aug 14 14:14:14 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux Sat Sep 2 09:53:29 EDT 2023 tmpdir is ./tmp.mri_nu_correct.mni.27682 cd /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.27682/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.27682/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.27682/ones.mgz 7.4.1 cwd /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.27682/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.27682/ones.mgz sysname Linux hostname lina machine x86_64 user erikc input ./tmp.mri_nu_correct.mni.27682/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.27682/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.27682/ones.mgz Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27682/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.27682/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27682/input.mean.dat 7.4.1 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27682/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.27682/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27682/input.mean.dat sysname Linux hostname lina machine x86_64 user erikc whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.27682/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.27682/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27682/ones.mgz --i ./tmp.mri_nu_correct.mni.27682/nu0.mgz --sum ./tmp.mri_nu_correct.mni.27682/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27682/output.mean.dat 7.4.1 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27682/ones.mgz --i ./tmp.mri_nu_correct.mni.27682/nu0.mgz --sum ./tmp.mri_nu_correct.mni.27682/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27682/output.mean.dat sysname Linux hostname lina machine x86_64 user erikc whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.27682/ones.mgz Loading ./tmp.mri_nu_correct.mni.27682/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.27682/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.27682/nu0.mgz ./tmp.mri_nu_correct.mni.27682/nu0.mgz mul 1.01019782604773735840 Saving result to './tmp.mri_nu_correct.mni.27682/nu0.mgz' (type = MGH ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.27682/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.27682/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.27682/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 12 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 1, i2 = 71 #mri_make_uchar# mapping 3 183 to 3 110 : b 1.015 m 0.595941 : thresh -1.70319 maxsat 426.191 : nzero 0 nsat 0 Sat Sep 2 09:59:51 EDT 2023 mri_nu_correct.mni done @#@FSTIME 2023:09:02:09:53:29 mri_nu_correct.mni N 9 e 382.02 S 1.14 U 380.87 P 99% M 614328 F 0 R 514368 W 0 c 637 w 172 I 0 O 59680 L 42.54 34.47 16.67 @#@FSLOADPOST 2023:09:02:09:59:51 mri_nu_correct.mni N 9 47.99 44.19 27.19 mri_add_xform_to_header -c /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2023:09:02:09:59:51 mri_add_xform_to_header N 4 e 1.54 S 0.02 U 1.51 P 99% M 23780 F 0 R 4569 W 0 c 49 w 1 I 0 O 10288 L 47.99 44.19 27.19 @#@FSLOADPOST 2023:09:02:09:59:52 mri_add_xform_to_header N 4 47.99 44.26 27.30 #-------------------------------------------- #@# Intensity Normalization Sat Sep 2 09:59:52 EDT 2023 /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.21730 -0.01575 -0.03080 11.84346; 0.00894 0.94283 0.52692 -6.70541; 0.03030 -0.50311 1.10120 -46.03311; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 4 Starting OpenSpline(): npoints = 4 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 90 gm peak at 54 (53), valley at 19 (18) csf peak at 27, setting threshold to 45 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 82 (81), valley at 70 (69) csf peak at 54, setting threshold to 72 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 4 minutes and 1 seconds. @#@FSTIME 2023:09:02:09:59:52 mri_normalize N 7 e 243.17 S 0.57 U 242.53 P 99% M 583932 F 0 R 263260 W 0 c 233 w 1 I 0 O 9728 L 47.99 44.26 27.30 @#@FSLOADPOST 2023:09:02:10:03:55 mri_normalize N 7 48.13 46.36 32.03 #-------------------------------------------- #@# Skull Stripping Sat Sep 2 10:03:55 EDT 2023 /scratch/MPI-LEMON/freesurfer/subjects/sub-032336/mri mri_em_register -skull nu.mgz /scratch/MPI-LEMON/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/scratch/MPI-LEMON/freesurfer/average/RB_all_withskull_2020_01_02.gca'... GCAread took 0 minutes and 2 seconds. average std = 23.0 using min determinant for regularization = 52.8 0 singular and 9205 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.9 or > 556.0 total sample mean = 77.3 (1403 zeros) ************************************************ spacing=8, using 3292 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3292, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=5.0 skull bounding box = (54, 16, 15) --> (204, 255, 185) finding center of left hemi white matter using (104, 96, 100) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 108, using box (86,66,79) --> (122, 125,120) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 108 +- 5.1 after smoothing, mri peak at 108, scaling input intensities by 1.000 scaling channel 0 by 1 initial log_p = -4.681 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.665053 @ (-10.526, 31.579, 10.526) max log p = -4.561018 @ (5.263, -5.263, -15.789) max log p = -4.501542 @ (2.632, -2.632, -2.632) max log p = -4.486868 @ (-1.316, 1.316, -3.947) max log p = -4.478377 @ (0.658, 3.289, 1.974) max log p = -4.478377 @ (0.000, 0.000, 0.000) max log p = -4.478377 @ (0.000, 0.000, 0.000) max log p = -4.478377 @ (0.000, 0.000, 0.000) Found translation: (-3.3, 28.3, -9.9): log p = -4.478 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.999, old_max_log_p =-4.478 (thresh=-4.5) 1.23625 0.00000 0.00000 -33.62207; 0.00000 1.14215 0.47309 -36.66379; 0.00000 -0.40708 0.98278 40.36131; 0.00000 0.00000 0.00000 1.00000; iteration took 3 minutes and 8 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.999, old_max_log_p =-3.999 (thresh=-4.0) 1.23625 0.00000 0.00000 -33.62207; 0.00000 1.14215 0.47309 -36.66379; 0.00000 -0.40708 0.98278 40.36131; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 3 minutes and 6 seconds. **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.923, old_max_log_p =-3.999 (thresh=-4.0) 1.21242 -0.01298 0.03159 -32.84240; 0.00000 1.20599 0.50241 -43.18072; -0.03969 -0.39656 0.96512 48.49736; 0.00000 0.00000 0.00000 1.00000; iteration took 3 minutes and 1 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.917, old_max_log_p =-3.923 (thresh=-3.9) 1.16695 -0.01250 0.03041 -26.91946; 0.00000 1.20599 0.50241 -43.18072; -0.03969 -0.39656 0.96512 48.49736; 0.00000 0.00000 0.00000 1.00000; iteration took 3 minutes and 2 seconds. **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.917, old_max_log_p =-3.917 (thresh=-3.9) 1.16695 -0.01250 0.03041 -26.91946; 0.00000 1.20599 0.50241 -43.18072; -0.03969 -0.39656 0.96512 48.49736; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 3 minutes and 2 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.881, old_max_log_p =-3.917 (thresh=-3.9) 1.16832 -0.01251 0.03045 -26.62886; 0.00032 1.21344 0.49627 -42.37576; -0.03955 -0.38527 0.96582 47.20961; 0.00000 0.00000 0.00000 1.00000; iteration took 2 minutes and 52 seconds. **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.877, old_max_log_p =-3.881 (thresh=-3.9) 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21628 0.49744 -42.80814; -0.03950 -0.38482 0.96468 47.28473; 0.00000 0.00000 0.00000 1.00000; iteration took 2 minutes and 55 seconds. **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.875, old_max_log_p =-3.877 (thresh=-3.9) 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3292 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; nsamples 3292 Quasinewton: input matrix 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.875 (old=-4.681) transform before final EM align: 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364986 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; nsamples 364986 Quasinewton: input matrix 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 012: -log(p) = 4.3 tol 0.000000 final transform: 1.16832 -0.01251 0.03045 -26.62886; 0.00033 1.21771 0.49802 -43.02484; -0.03955 -0.38527 0.96581 47.20987; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... #VMPC# mri_em_register VmPeak 783864 FSRUNTIME@ mri_em_register 0.4399 hours 1 threads registration took 26 minutes and 23 seconds. @#@FSTIME 2023:09:02:10:03:55 mri_em_register N 4 e 1583.51 S 1.00 U 1575.38 P 99% M 629380 F 0 R 166624 W 0 c 2209 w 0 I 0 O 32 L 48.13 46.36 32.03 @#@FSLOADPOST 2023:09:02:10:30:19 mri_em_register N 4 50.40 48.71 45.41 mri_watershed -T1 -brain_atlas /scratch/MPI-LEMON/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... mri_watershed Error: Problem in the COG calculation: T1.mgz may not contain properly normalized white-matter. Confirm that T1.mgz has enough white-matter voxels of value 110. If white-matter contains few if any voxels of value 110, try adding wm control-points to nu.mgz, and re-run recon-all. Command exited with non-zero status 1 @#@FSTIME 2023:09:02:10:30:19 mri_watershed N 6 e 4.87 S 0.38 U 4.49 P 99% M 769208 F 0 R 190923 W 0 c 25 w 1 I 0 O 0 L 50.40 48.71 45.41 @#@FSLOADPOST 2023:09:02:10:30:24 mri_watershed N 6 50.21 48.70 45.42 Linux lina 5.15.0-82-generic #91-Ubuntu SMP Mon Aug 14 14:14:14 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-032336 exited with ERRORS at Sat Sep 2 10:30:24 EDT 2023 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Sat Sep 2 13:03:39 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -autorecon1 -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 23Gi 684Mi 5.9Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:39-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:39-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:03:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Sat Sep 2 13:03:40 EDT 2023 Found 1 runs /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig/001.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup mri_convert /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz --conform mri_convert /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz --conform reading from /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 4060 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz... @#@FSTIME 2023:09:02:13:03:43 mri_convert N 3 e 2.40 S 0.02 U 2.38 P 100% M 60640 F 0 R 21979 W 0 c 16 w 2 I 0 O 11760 L 0.21 0.42 0.45 @#@FSLOADPOST 2023:09:02:13:03:45 mri_convert N 3 0.28 0.43 0.46 mri_add_xform_to_header -c /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach.xfm /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2023:09:02:13:03:45 mri_add_xform_to_header N 4 e 0.76 S 0.00 U 0.76 P 100% M 23424 F 0 R 4573 W 0 c 9 w 1 I 0 O 11760 L 0.28 0.43 0.46 @#@FSLOADPOST 2023:09:02:13:03:46 mri_add_xform_to_header N 4 0.28 0.43 0.46 #-------------------------------------------- #@# Talairach Sat Sep 2 13:03:46 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri /home/aiisc/Downloads/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Sat Sep 2 13:03:46 EDT 2023 tmpdir is ./tmp.mri_nu_correct.mni.28458 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.28458/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.28458/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.28458/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.28458/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Sat Sep 2 13:06:22 EDT 2023 mri_nu_correct.mni done @#@FSTIME 2023:09:02:13:03:46 mri_nu_correct.mni N 12 e 155.26 S 0.17 U 155.07 P 99% M 506976 F 2 R 146427 W 0 c 1308 w 101 I 512 O 23408 L 0.28 0.43 0.46 @#@FSLOADPOST 2023:09:02:13:06:22 mri_nu_correct.mni N 12 0.95 0.67 0.55 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Sat Sep 2 13:06:22 EDT 2023 Ended at Sat Sep 2 13:06:40 EDT 2023 talairach_avi done @#@FSTIME 2023:09:02:13:06:22 talairach_avi N 4 e 18.09 S 0.79 U 11.29 P 66% M 255616 F 18 R 397777 W 0 c 82 w 173 I 9120 O 295272 L 0.95 0.67 0.55 @#@FSLOADPOST 2023:09:02:13:06:40 talairach_avi N 4 0.90 0.67 0.55 INFO: transforms/talairach.xfm already exists! The new transforms/talairach.auto.xfm will not be copied to transforms/talairach.xfm This is done to retain any edits made to transforms/talairach.xfm Add the -clean-tal flag to recon-all to overwrite transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Sat Sep 2 13:06:40 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.4699, pval=0.1049 >= threshold=0.0050) @#@FSTIME 2023:09:02:13:06:40 talairach_afd N 4 e 0.01 S 0.00 U 0.00 P 29% M 5632 F 14 R 214 W 0 c 2 w 16 I 2504 O 0 L 0.90 0.67 0.55 @#@FSLOADPOST 2023:09:02:13:06:40 talairach_afd N 4 0.90 0.67 0.55 awk -f /home/aiisc/Downloads/freesurfer/bin/extract_talairach_avi_QA.awk /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach_avi.log tal_QC_AZS /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach_avi.log TalAviQA: 0.96698 z-score: -2 #-------------------------------------------- #@# Nu Intensity Correction Sat Sep 2 13:06:40 EDT 2023 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri /home/aiisc/Downloads/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Sat Sep 2 13:06:40 EDT 2023 tmpdir is ./tmp.mri_nu_correct.mni.28705 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.28705/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.28705/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.28705/ones.mgz 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.28705/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.28705/ones.mgz sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc input ./tmp.mri_nu_correct.mni.28705/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.28705/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.28705/ones.mgz Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.28705/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.28705/sum.junk --avgwf ./tmp.mri_nu_correct.mni.28705/input.mean.dat 7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.28705/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.28705/sum.junk --avgwf ./tmp.mri_nu_correct.mni.28705/input.mean.dat sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.28705/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.28705/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.28705/ones.mgz --i ./tmp.mri_nu_correct.mni.28705/nu0.mgz --sum ./tmp.mri_nu_correct.mni.28705/sum.junk --avgwf ./tmp.mri_nu_correct.mni.28705/output.mean.dat 7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.28705/ones.mgz --i ./tmp.mri_nu_correct.mni.28705/nu0.mgz --sum ./tmp.mri_nu_correct.mni.28705/sum.junk --avgwf ./tmp.mri_nu_correct.mni.28705/output.mean.dat sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.28705/ones.mgz Loading ./tmp.mri_nu_correct.mni.28705/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.28705/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.28705/nu0.mgz ./tmp.mri_nu_correct.mni.28705/nu0.mgz mul 1.01019782604773735840 Saving result to './tmp.mri_nu_correct.mni.28705/nu0.mgz' (type = MGH ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.28705/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.28705/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.28705/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 5 seconds. mapping ( 3, 183) to ( 3, 110) Sat Sep 2 13:09:33 EDT 2023 mri_nu_correct.mni done @#@FSTIME 2023:09:02:13:06:40 mri_nu_correct.mni N 9 e 173.05 S 0.69 U 172.33 P 99% M 614056 F 39 R 512612 W 0 c 1404 w 198 I 6688 O 59672 L 0.90 0.67 0.55 @#@FSLOADPOST 2023:09:02:13:09:33 mri_nu_correct.mni N 9 1.12 0.86 0.65 mri_add_xform_to_header -c /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2023:09:02:13:09:33 mri_add_xform_to_header N 4 e 0.81 S 0.01 U 0.79 P 99% M 23552 F 1 R 4572 W 0 c 7 w 2 I 256 O 10288 L 1.12 0.86 0.65 @#@FSLOADPOST 2023:09:02:13:09:34 mri_add_xform_to_header N 4 1.12 0.86 0.65 #-------------------------------------------- #@# Intensity Normalization Sat Sep 2 13:09:34 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_normalize -g 1 -seed 1234 -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/tmp/control.dat -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 using control points from file /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/tmp/control.dat... assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... Reading 1028 control points... only using 1026 control points from file, mean 105.6, scaling by 1.04... Doing gentle normalization with control points/label building Voronoi diagram... performing soap bubble smoothing, sigma = 8... talairach transform 1.21730 -0.01575 -0.03080 11.84346; 0.00894 0.94283 0.52692 -6.70541; 0.03030 -0.50311 1.10120 -46.03311; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 4 Starting OpenSpline(): npoints = 4 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 56 (55), valley at 40 (39) csf peak at 28, setting threshold to 46 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 56 (55), valley at 40 (39) csf peak at 28, setting threshold to 46 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 3 seconds. @#@FSTIME 2023:09:02:13:09:34 mri_normalize N 9 e 123.91 S 0.56 U 123.33 P 99% M 583180 F 7 R 316351 W 0 c 677 w 6 I 1240 O 10072 L 1.12 0.86 0.65 @#@FSLOADPOST 2023:09:02:13:11:38 mri_normalize N 9 1.38 1.05 0.75 #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:11:38 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=2063832906 voxels, voxel volume =1.000 = 2063832906 mmm3 = 2063832.960 cm3 done. PostAnalyze...Basin Prior 187 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 37344 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=14 , nb = 144 LEFT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=76 , nb = 702 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5022 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=25 , nb = 9666 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 18174 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 14, 25, 45, 60 after analyzing : 14, 38, 45, 43 LEFT_CER before analyzing : 76, 46, 36, 61 after analyzing : 27, 46, 46, 49 RIGHT_BRAIN before analyzing : 14, 20, 37, 62 after analyzing : 14, 31, 37, 38 LEFT_BRAIN before analyzing : 25, 32, 40, 61 after analyzing : 25, 37, 40, 43 OTHER before analyzing : 4, 6, 67, 91 after analyzing : 4, 46, 67, 57 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.033, std = 0.071 curvature mean = 51.723, std = 20.274 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.45, sigma = 48.56 after rotation: sse = 24.45, sigma = 48.56 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.37, its var is 51.92 before Erosion-Dilatation 41.94% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 3780875 voxels, voxel volume = 1.000 mm3 = 3780875 mmm3 = 3780.875 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 20.149617 mri_watershed stimesec 0.312025 mri_watershed ru_maxrss 867360 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 219512 mri_watershed ru_majflt 11 mri_watershed ru_nswap 0 mri_watershed ru_inblock 159152 mri_watershed ru_oublock 3192 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 46 mri_watershed ru_nivcsw 125 mri_watershed done @#@FSTIME 2023:09:02:13:11:38 mri_watershed N 6 e 20.52 S 0.35 U 20.15 P 99% M 867360 F 11 R 219516 W 0 c 125 w 47 I 159152 O 3192 L 1.38 1.05 0.75 @#@FSLOADPOST 2023:09:02:13:11:58 mri_watershed N 6 1.27 1.05 0.75 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:03:39 EDT 2023 Ended at Sat Sep 2 13:11:59 EDT 2023 #@#%# recon-all-run-time-hours 0.139 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:11:59 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:20:28 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 35 -clean-bm -no-wsgcaatlas -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 661Mi 6.0Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:20:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:20:28 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -h 35 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz *************************WATERSHED************************** Sorting... T1-weighted MRI image Count how many 110 voxels are present : 783362 Find the largest 110-component... heap usage = 418388 Kbytes. current max segment has 435193 voxels removing small segments (less than 1 percent of maxarea). heap usage = 127152 Kbytes. removing small segments (less than 1 percent of maxarea).done And identify it as the main brain basin...done Main component: 435193 voxels first estimation of the COG coord: x=184 y=89 z=71 r=114 first estimation of the main basin volume: 6333923 voxels global maximum in x=219, y=4, z=15, Imax=255 CSF=15, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 35 percent done. Analyze... main basin size= 9940733 voxels, voxel volume =1.000 = 9940733 mmm3 = 9940.733 cm3 done. PostAnalyze... ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 31 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 26 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 11 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 28 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 45 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 29 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 14 voxels ***** 38 basin(s) merged in 4 iteration(s) ***** 538 voxel(s) added to the main basin ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; 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size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 37 voxels done. ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=130,y=117, z=142, r=128161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 39114 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 16, 50, 56 after analyzing : 5, 38, 50, 42 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.014, std = 0.061 curvature mean = 51.743, std = 15.636 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 45.67, sigma = 121.72 after rotation: sse = 45.67, sigma = 121.72 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 53.72, its var is 77.91 before Erosion-Dilatation 53.64% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 4252937 voxels, voxel volume = 1.000 mm3 = 4252937 mmm3 = 4252.937 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.483342 mri_watershed stimesec 0.239826 mri_watershed ru_maxrss 427744 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 191968 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 2992 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 12 mri_watershed ru_nivcsw 501 mri_watershed done @#@FSTIME 2023:09:02:13:20:28 mri_watershed N 5 e 17.75 S 0.26 U 17.49 P 99% M 427744 F 0 R 193029 W 0 c 503 w 33 I 0 O 2992 L 0.23 0.38 0.52 @#@FSLOADPOST 2023:09:02:13:20:46 mri_watershed N 5 0.45 0.42 0.53 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:20:28 EDT 2023 Ended at Sat Sep 2 13:20:47 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:20:47 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:22:46 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 25 -clean-bm -no-wsgcaatlas -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 681Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:46-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:22:47-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:22:47 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -h 25 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz *************************WATERSHED************************** Sorting... T1-weighted MRI image modification of the preflooding height to 15 percent Count how many 110 voxels are present : 783362 Find the largest 110-component... heap usage = 418388 Kbytes. current max segment has 435193 voxels removing small segments (less than 1 percent of maxarea). heap usage = 127152 Kbytes. removing small segments (less than 1 percent of maxarea).done And identify it as the main brain basin...done Main component: 435193 voxels first estimation of the COG coord: x=184 y=89 z=71 r=114 first estimation of the main basin volume: 6333923 voxels global maximum in x=219, y=4, z=15, Imax=255 CSF=15, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 15 percent done. Analyze... main basin size= 9936955 voxels, voxel volume =1.000 = 9936955 mmm3 = 9936.955 cm3 done. PostAnalyze... ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 31 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 26 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 11 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 28 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 46 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 23 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ***** 36 basin(s) merged in 4 iteration(s) ***** 512 voxel(s) added to the main basin ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; 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size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; 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size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 83 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 22 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels done. ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=130,y=117, z=142, r=128161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 39126 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 16, 50, 56 after analyzing : 5, 38, 50, 42 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.009, std = 0.052 curvature mean = 51.886, std = 15.812 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 46.03, sigma = 121.64 after rotation: sse = 46.03, sigma = 121.64 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 54.91, its var is 80.20 before Erosion-Dilatation 54.20% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 4491140 voxels, voxel volume = 1.000 mm3 = 4491140 mmm3 = 4491.140 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.066473 mri_watershed stimesec 0.264038 mri_watershed ru_maxrss 427744 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 191974 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3264 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 12 mri_watershed ru_nivcsw 103 mri_watershed done @#@FSTIME 2023:09:02:13:22:47 mri_watershed N 5 e 17.35 S 0.28 U 17.07 P 100% M 427744 F 0 R 193029 W 0 c 103 w 33 I 0 O 3264 L 0.42 0.41 0.52 @#@FSLOADPOST 2023:09:02:13:23:04 mri_watershed N 5 0.55 0.44 0.53 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:22:46 EDT 2023 Ended at Sat Sep 2 13:23:05 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:23:05 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:23:37 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 15 -clean-bm -no-wsgcaatlas -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 682Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:23:38-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:23:38 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -h 15 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz *************************WATERSHED************************** Sorting... T1-weighted MRI image Count how many 110 voxels are present : 783362 Find the largest 110-component... heap usage = 418388 Kbytes. current max segment has 435193 voxels removing small segments (less than 1 percent of maxarea). heap usage = 127152 Kbytes. removing small segments (less than 1 percent of maxarea).done And identify it as the main brain basin...done Main component: 435193 voxels first estimation of the COG coord: x=184 y=89 z=71 r=114 first estimation of the main basin volume: 6333923 voxels global maximum in x=219, y=4, z=15, Imax=255 CSF=15, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 15 percent done. Analyze... main basin size= 9936955 voxels, voxel volume =1.000 = 9936955 mmm3 = 9936.955 cm3 done. PostAnalyze... ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 31 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 26 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 11 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 28 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 46 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 23 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ***** 36 basin(s) merged in 4 iteration(s) ***** 512 voxel(s) added to the main basin ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; 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size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 10 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 83 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 5 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 4 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 22 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 6 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels done. ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=130,y=117, z=142, r=128161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 39126 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 16, 50, 56 after analyzing : 5, 38, 50, 42 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.009, std = 0.052 curvature mean = 51.886, std = 15.812 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 46.03, sigma = 121.64 after rotation: sse = 46.03, sigma = 121.64 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 54.91, its var is 80.20 before Erosion-Dilatation 54.20% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 4491140 voxels, voxel volume = 1.000 mm3 = 4491140 mmm3 = 4491.140 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.085799 mri_watershed stimesec 0.252026 mri_watershed ru_maxrss 427744 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 191976 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3264 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 12 mri_watershed ru_nivcsw 93 mri_watershed done @#@FSTIME 2023:09:02:13:23:38 mri_watershed N 5 e 17.36 S 0.27 U 17.09 P 100% M 427744 F 0 R 193036 W 0 c 93 w 32 I 0 O 3264 L 0.69 0.48 0.54 @#@FSLOADPOST 2023:09:02:13:23:55 mri_watershed N 5 0.84 0.53 0.55 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:23:37 EDT 2023 Ended at Sat Sep 2 13:23:56 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:23:56 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:27:24 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 688Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:27:24-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:27:24 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=2065852234 voxels, voxel volume =1.000 = 2065852234 mmm3 = 2065852.288 cm3 done. PostAnalyze...Basin Prior 187 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 37344 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=14 , nb = 144 LEFT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=76 , nb = 702 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5022 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=25 , nb = 9666 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 18174 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 14, 25, 45, 60 after analyzing : 14, 38, 45, 43 LEFT_CER before analyzing : 76, 46, 36, 61 after analyzing : 27, 46, 46, 49 RIGHT_BRAIN before analyzing : 14, 20, 37, 62 after analyzing : 14, 31, 37, 38 LEFT_BRAIN before analyzing : 25, 32, 40, 61 after analyzing : 25, 37, 40, 43 OTHER before analyzing : 4, 6, 67, 91 after analyzing : 4, 46, 67, 57 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.033, std = 0.071 curvature mean = 51.723, std = 20.274 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.45, sigma = 48.56 after rotation: sse = 24.45, sigma = 48.56 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.37, its var is 51.92 before Erosion-Dilatation 41.94% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 3780875 voxels, voxel volume = 1.000 mm3 = 3780875 mmm3 = 3780.875 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 20.133430 mri_watershed stimesec 0.272019 mri_watershed ru_maxrss 867360 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 219518 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3192 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 120 mri_watershed done @#@FSTIME 2023:09:02:13:27:24 mri_watershed N 6 e 20.45 S 0.31 U 20.13 P 99% M 867360 F 0 R 219522 W 0 c 120 w 1 I 0 O 3192 L 0.64 0.61 0.58 @#@FSLOADPOST 2023:09:02:13:27:44 mri_watershed N 6 0.74 0.64 0.59 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:27:24 EDT 2023 Ended at Sat Sep 2 13:27:45 EDT 2023 #@#%# recon-all-run-time-hours 0.006 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:27:45 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:28:27 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 50 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 690Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:28:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:28:27 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 50 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 50 percent done. Analyze... main basin size=2158864045 voxels, voxel volume =1.000 = 2158864045 mmm3 = 2158864.128 cm3 done. PostAnalyze...Basin Prior 0 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=133,y=127, z=144, r=12595 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 45174 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 144 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 234 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 22962 Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_BRAIN before analyzing : 3, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_BRAIN before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 OTHER before analyzing : 4, 2, 0, 5 after analyzing : 2, 17, 25, 19 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = -0.009, std = 0.007 curvature mean = 92.357, std = 17.473 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 34.69, sigma = 102.63 after rotation: sse = 34.69, sigma = 102.63 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 39.35, its var is 69.22 before Erosion-Dilatation 40.70% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...65 iterations mri_strip_skull: done peeling brain Brain Size = 4332333 voxels, voxel volume = 1.000 mm3 = 4332333 mmm3 = 4332.333 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.105967 mri_watershed stimesec 0.231972 mri_watershed ru_maxrss 876312 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 221780 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 6976 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 125 mri_watershed done @#@FSTIME 2023:09:02:13:28:27 mri_watershed N 8 e 17.38 S 0.27 U 17.10 P 99% M 876312 F 0 R 221785 W 0 c 125 w 1 I 0 O 6976 L 0.35 0.55 0.56 @#@FSLOADPOST 2023:09:02:13:28:45 mri_watershed N 8 0.49 0.57 0.56 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:28:27 EDT 2023 Ended at Sat Sep 2 13:28:46 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:28:46 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:31:32 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 25 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 670Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:31:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:31:33 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 25 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=1624913034 voxels, voxel volume =1.000 = 1624913034 mmm3 = 1624913.024 cm3 done. PostAnalyze...Basin Prior 187 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 37344 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=14 , nb = 144 LEFT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=76 , nb = 702 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5022 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=25 , nb = 9666 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 18174 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 14, 25, 45, 60 after analyzing : 14, 38, 45, 43 LEFT_CER before analyzing : 76, 46, 36, 61 after analyzing : 27, 46, 46, 49 RIGHT_BRAIN before analyzing : 14, 20, 37, 62 after analyzing : 14, 31, 37, 38 LEFT_BRAIN before analyzing : 25, 32, 40, 61 after analyzing : 25, 37, 40, 43 OTHER before analyzing : 4, 6, 67, 91 after analyzing : 4, 46, 67, 57 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.033, std = 0.071 curvature mean = 51.723, std = 20.274 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.45, sigma = 48.56 after rotation: sse = 24.45, sigma = 48.56 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.37, its var is 51.92 before Erosion-Dilatation 41.94% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 3780875 voxels, voxel volume = 1.000 mm3 = 3780875 mmm3 = 3780.875 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 20.744151 mri_watershed stimesec 0.239955 mri_watershed ru_maxrss 867352 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 219517 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3192 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 103 mri_watershed done @#@FSTIME 2023:09:02:13:31:33 mri_watershed N 8 e 21.02 S 0.28 U 20.74 P 99% M 867352 F 0 R 219521 W 0 c 104 w 1 I 0 O 3192 L 0.11 0.37 0.48 @#@FSLOADPOST 2023:09:02:13:31:54 mri_watershed N 8 0.37 0.41 0.50 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:31:32 EDT 2023 Ended at Sat Sep 2 13:31:55 EDT 2023 #@#%# recon-all-run-time-hours 0.006 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:31:55 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:32:33 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 25 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 690Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:33-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:32:33 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 25 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=1728038026 voxels, voxel volume =1.000 = 1728038026 mmm3 = 1728038.016 cm3 done. PostAnalyze...Basin Prior 187 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 37344 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=14 , nb = 144 LEFT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=76 , nb = 702 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5022 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=25 , nb = 9666 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 18174 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 14, 25, 45, 60 after analyzing : 14, 38, 45, 43 LEFT_CER before analyzing : 76, 46, 36, 61 after analyzing : 27, 46, 46, 49 RIGHT_BRAIN before analyzing : 14, 20, 37, 62 after analyzing : 14, 31, 37, 38 LEFT_BRAIN before analyzing : 25, 32, 40, 61 after analyzing : 25, 37, 40, 43 OTHER before analyzing : 4, 6, 67, 91 after analyzing : 4, 46, 67, 57 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.033, std = 0.071 curvature mean = 51.723, std = 20.274 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.45, sigma = 48.56 after rotation: sse = 24.45, sigma = 48.56 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.37, its var is 51.92 before Erosion-Dilatation 41.94% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation... #New# invocation of recon-all Sat Sep 2 13:32:56 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 20 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 670Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:32:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #New# invocation of recon-all Sat Sep 2 13:33:27 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 20 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 670Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:33:27-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #New# invocation of recon-all Sat Sep 2 13:34:09 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 20 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 671Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:34:09-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash mv: cannot stat '/home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz': No such file or directory #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:34:09 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 20 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 20 percent done. Analyze... main basin size=2161861863 voxels, voxel volume =1.000 = 2161861863 mmm3 = 2161861.888 cm3 done. PostAnalyze...Basin Prior 7 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 36924 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=54 , nb = 162 LEFT_CER CSF_MIN=0, CSF_intensity=30, CSF_MAX=43 , nb = 720 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5220 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=23 , nb = 9270 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 17994 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 54, 51, 51, 64 after analyzing : 32, 51, 51, 54 LEFT_CER before analyzing : 43, 43, 44, 61 after analyzing : 39, 43, 44, 47 RIGHT_BRAIN before analyzing : 14, 24, 43, 62 after analyzing : 14, 36, 43, 42 LEFT_BRAIN before analyzing : 23, 34, 45, 61 after analyzing : 23, 41, 45, 46 OTHER before analyzing : 4, 6, 68, 91 after analyzing : 4, 47, 68, 58 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.026, std = 0.064 curvature mean = 51.785, std = 20.496 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.73, sigma = 49.50 after rotation: sse = 24.73, sigma = 49.50 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.77, its var is 53.10 before Erosion-Dilatation 41.81% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 4006791 voxels, voxel volume = 1.000 mm3 = 4006791 mmm3 = 4006.791 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 20.568423 mri_watershed stimesec 0.260005 mri_watershed ru_maxrss 867352 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 219517 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3424 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 124 mri_watershed done @#@FSTIME 2023:09:02:13:34:09 mri_watershed N 8 e 20.87 S 0.30 U 20.56 P 99% M 867352 F 0 R 219521 W 0 c 124 w 1 I 0 O 3424 L 0.19 0.33 0.45 @#@FSLOADPOST 2023:09:02:13:34:30 mri_watershed N 8 0.42 0.38 0.46 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:34:09 EDT 2023 Ended at Sat Sep 2 13:34:31 EDT 2023 #@#%# recon-all-run-time-hours 0.006 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:34:31 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:35:20 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 26 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 690Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:35:20 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 26 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 26 percent done. Analyze... main basin size=1874898964 voxels, voxel volume =1.000 = 1874898964 mmm3 = 1874898.944 cm3 done. PostAnalyze...Basin Prior 0 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=133,y=127, z=144, r=12592 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 45162 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 162 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 216 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 22932 mri_watershed Error: GLOBAL region of the brain empty ! Command exited with non-zero status 1 @#@FSTIME 2023:09:02:13:35:20 mri_watershed N 8 e 6.00 S 0.33 U 5.66 P 99% M 876568 F 0 R 221781 W 0 c 36 w 1 I 0 O 0 L 0.33 0.36 0.45 @#@FSLOADPOST 2023:09:02:13:35:26 mri_watershed N 8 0.38 0.37 0.45 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-032336_troubleshoot2_dup exited with ERRORS at Sat Sep 2 13:35:26 EDT 2023 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Sat Sep 2 13:35:56 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 20 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 670Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:35:56-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #New# invocation of recon-all Sat Sep 2 13:36:10 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 20 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 670Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:36:10-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash mv: cannot stat '/home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz': No such file or directory #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:36:10 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 20 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 20 percent done. Analyze... main basin size=1924277479 voxels, voxel volume =1.000 = 1924277479 mmm3 = 1924277.504 cm3 done. PostAnalyze...Basin Prior 7 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 36924 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=54 , nb = 162 LEFT_CER CSF_MIN=0, CSF_intensity=30, CSF_MAX=43 , nb = 720 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5220 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=23 , nb = 9270 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 17994 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 54, 51, 51, 64 after analyzing : 32, 51, 51, 54 LEFT_CER before analyzing : 43, 43, 44, 61 after analyzing : 39, 43, 44, 47 RIGHT_BRAIN before analyzing : 14, 24, 43, 62 after analyzing : 14, 36, 43, 42 LEFT_BRAIN before analyzing : 23, 34, 45, 61 after analyzing : 23, 41, 45, 46 OTHER before analyzing : 4, 6, 68, 91 after analyzing : 4, 47, 68, 58 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.026, std = 0.064 curvature mean = 51.785, std = 20.496 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.73, sigma = 49.50 after rotation: sse = 24.73, sigma = 49.50 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.77, its var is 53.10 before Erosion-Dilatation 41.81% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 4006791 voxels, voxel volume = 1.000 mm3 = 4006791 mmm3 = 4006.791 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 20.613061 mri_watershed stimesec 0.243965 mri_watershed ru_maxrss 867180 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 219521 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3424 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 132 mri_watershed done @#@FSTIME 2023:09:02:13:36:10 mri_watershed N 8 e 20.90 S 0.28 U 20.61 P 99% M 867180 F 0 R 219525 W 0 c 132 w 1 I 0 O 3424 L 0.33 0.35 0.45 @#@FSLOADPOST 2023:09:02:13:36:31 mri_watershed N 8 0.56 0.41 0.46 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:36:10 EDT 2023 Ended at Sat Sep 2 13:36:32 EDT 2023 #@#%# recon-all-run-time-hours 0.006 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:36:32 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:37:19 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 40 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 690Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:19-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:20-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #New# invocation of recon-all Sat Sep 2 13:37:28 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 40 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 671Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:37:28-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:37:28 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 40 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 40 percent done. Analyze... main basin size=1908397741 voxels, voxel volume =1.000 = 1908397741 mmm3 = 1908397.696 cm3 done. PostAnalyze...Basin Prior 0 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=133,y=127, z=144, r=12595 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 45174 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 144 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 234 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 22962 Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_BRAIN before analyzing : 3, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_BRAIN before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 OTHER before analyzing : 4, 2, 0, 5 after analyzing : 2, 17, 25, 19 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = -0.009, std = 0.007 curvature mean = 92.357, std = 17.473 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 34.69, sigma = 102.63 after rotation: sse = 34.69, sigma = 102.63 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 39.35, its var is 69.22 before Erosion-Dilatation 40.70% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...65 iterations mri_strip_skull: done peeling brain Brain Size = 4332333 voxels, voxel volume = 1.000 mm3 = 4332333 mmm3 = 4332.333 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 16.827278 mri_watershed stimesec 0.243931 mri_watershed ru_maxrss 876312 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 221780 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 6976 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 497 mri_watershed done @#@FSTIME 2023:09:02:13:37:28 mri_watershed N 8 e 17.12 S 0.28 U 16.82 P 99% M 876312 F 0 R 221785 W 0 c 507 w 1 I 0 O 6976 L 0.37 0.38 0.45 @#@FSLOADPOST 2023:09:02:13:37:46 mri_watershed N 8 0.55 0.42 0.46 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:37:28 EDT 2023 Ended at Sat Sep 2 13:37:47 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:37:47 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:38:22 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 30 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 691Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:22-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:38:23-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:38:23 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 30 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 30 percent done. Analyze... main basin size=1886463661 voxels, voxel volume =1.000 = 1886463661 mmm3 = 1886463.616 cm3 done. PostAnalyze...Basin Prior 0 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=133,y=127, z=144, r=12595 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 45174 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 144 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 234 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 22962 Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_BRAIN before analyzing : 3, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_BRAIN before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 OTHER before analyzing : 4, 2, 0, 5 after analyzing : 2, 17, 25, 19 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = -0.009, std = 0.007 curvature mean = 92.357, std = 17.473 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 34.69, sigma = 102.63 after rotation: sse = 34.69, sigma = 102.63 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 39.35, its var is 69.22 before Erosion-Dilatation 40.70% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...65 iterations mri_strip_skull: done peeling brain Brain Size = 4332333 voxels, voxel volume = 1.000 mm3 = 4332333 mmm3 = 4332.333 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.165540 mri_watershed stimesec 0.268024 mri_watershed ru_maxrss 876440 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 221782 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 6976 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 1 mri_watershed ru_nivcsw 119 mri_watershed done @#@FSTIME 2023:09:02:13:38:23 mri_watershed N 8 e 17.47 S 0.31 U 17.16 P 99% M 876440 F 0 R 221786 W 0 c 119 w 2 I 0 O 6976 L 0.46 0.41 0.45 @#@FSLOADPOST 2023:09:02:13:38:40 mri_watershed N 8 0.58 0.44 0.46 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:38:22 EDT 2023 Ended at Sat Sep 2 13:38:41 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:38:41 EDT 2023 #New# invocation of recon-all Sat Sep 2 13:39:44 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 30 -clean-bm -nowsgcaatlas -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.2Gi 22Gi 690Mi 6.1Gi 27Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 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freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-17:39:44-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 13:39:44 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -h 30 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz *************************WATERSHED************************** Sorting... T1-weighted MRI image Count how many 110 voxels are present : 783362 Find the largest 110-component... heap usage = 418388 Kbytes. current max segment has 435193 voxels removing small segments (less than 1 percent of maxarea). heap usage = 127152 Kbytes. removing small segments (less than 1 percent of maxarea).done And identify it as the main brain basin...done Main component: 435193 voxels first estimation of the COG coord: x=184 y=89 z=71 r=114 first estimation of the main basin volume: 6333923 voxels global maximum in x=219, y=4, z=15, Imax=255 CSF=15, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 30 percent done. Analyze... main basin size= 9940716 voxels, voxel volume =1.000 = 9940716 mmm3 = 9940.716 cm3 done. PostAnalyze... ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 31 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 10 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 26 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 18 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 11 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 7 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 28 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 15 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 13 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 45 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 4 ambiguous voxels; size: 29 voxels ambiguous basin, merged: at least 2 ambiguous voxels; size: 8 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 17 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 12 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 9 voxels ambiguous basin, merged: at least 3 ambiguous voxels; size: 14 voxels ***** 38 basin(s) merged in 4 iteration(s) ***** 538 voxel(s) added to the main basin ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 3 voxels ambiguous basin, non merged: 0 ambiguous voxels; 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size: 2 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 1 voxels ambiguous basin, non merged: 0 ambiguous voxels; size: 37 voxels done. ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=130,y=117, z=142, r=128161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 39162 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 16, 50, 56 after analyzing : 5, 38, 50, 42 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.007, std = 0.049 curvature mean = 51.838, std = 15.611 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 46.29, sigma = 122.62 after rotation: sse = 46.29, sigma = 122.62 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 55.04, its var is 80.55 before Erosion-Dilatation 54.57% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 4256040 voxels, voxel volume = 1.000 mm3 = 4256040 mmm3 = 4256.040 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.319564 mri_watershed stimesec 0.211896 mri_watershed ru_maxrss 427616 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 191963 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3000 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 12 mri_watershed ru_nivcsw 498 mri_watershed done @#@FSTIME 2023:09:02:13:39:44 mri_watershed N 5 e 17.56 S 0.23 U 17.32 P 99% M 427616 F 0 R 193026 W 0 c 501 w 34 I 0 O 3000 L 0.53 0.47 0.47 @#@FSLOADPOST 2023:09:02:13:40:02 mri_watershed N 5 0.66 0.50 0.48 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 13:39:44 EDT 2023 Ended at Sat Sep 2 13:40:03 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 13:40:03 EDT 2023 #New# invocation of recon-all Sat Sep 2 15:58:31 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 30 -clean-bm -subjid sub-032336_troubleshoot2_dup subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 1.9Gi 26Gi 663Mi 3.2Gi 28Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:31-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:32-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #New# invocation of recon-all Sat Sep 2 15:58:40 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 30 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 1.9Gi 25Gi 664Mi 3.3Gi 28Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:58:40-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 15:58:40 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 30 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 30 percent done. Analyze... main basin size=1917171373 voxels, voxel volume =1.000 = 1917171373 mmm3 = 1917171.328 cm3 done. PostAnalyze...Basin Prior 0 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=133,y=127, z=144, r=12595 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 45174 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 0 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 144 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 234 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 22962 Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. (2) Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_CER before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 RIGHT_BRAIN before analyzing : 3, 2, 0, 3 after analyzing : 2, 17, 25, 19 LEFT_BRAIN before analyzing : 4, 2, 0, 3 after analyzing : 2, 17, 25, 19 OTHER before analyzing : 4, 2, 0, 5 after analyzing : 2, 17, 25, 19 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = -0.009, std = 0.007 curvature mean = 92.357, std = 17.473 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 34.69, sigma = 102.63 after rotation: sse = 34.69, sigma = 102.63 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 39.35, its var is 69.22 before Erosion-Dilatation 40.70% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...65 iterations mri_strip_skull: done peeling brain Brain Size = 4332333 voxels, voxel volume = 1.000 mm3 = 4332333 mmm3 = 4332.333 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 17.247585 mri_watershed stimesec 0.255934 mri_watershed ru_maxrss 876444 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 221778 mri_watershed ru_majflt 11 mri_watershed ru_nswap 0 mri_watershed ru_inblock 169424 mri_watershed ru_oublock 6976 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 48 mri_watershed ru_nivcsw 121 mri_watershed done @#@FSTIME 2023:09:02:15:58:40 mri_watershed N 8 e 17.55 S 0.29 U 17.24 P 99% M 876444 F 11 R 221782 W 0 c 121 w 49 I 169424 O 6976 L 0.14 0.46 0.49 @#@FSLOADPOST 2023:09:02:15:58:58 mri_watershed N 8 0.39 0.50 0.50 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 15:58:40 EDT 2023 Ended at Sat Sep 2 15:58:59 EDT 2023 #@#%# recon-all-run-time-hours 0.005 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 15:58:59 EDT 2023 #New# invocation of recon-all Sat Sep 2 15:59:36 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -skullstrip -wsthresh 25 -clean-bm -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 1.9Gi 25Gi 686Mi 3.4Gi 28Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-19:59:36-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/brainmask.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/trash #-------------------------------------------- #@# Skull Stripping Sat Sep 2 15:59:36 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta -h 25 T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) Mode: Preflooding height manually specified ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=2081420426 voxels, voxel volume =1.000 = 2081420426 mmm3 = 2081420.416 cm3 done. PostAnalyze...Basin Prior 187 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 37344 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=14 , nb = 144 LEFT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=76 , nb = 702 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5022 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=25 , nb = 9666 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 18174 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 14, 25, 45, 60 after analyzing : 14, 38, 45, 43 LEFT_CER before analyzing : 76, 46, 36, 61 after analyzing : 27, 46, 46, 49 RIGHT_BRAIN before analyzing : 14, 20, 37, 62 after analyzing : 14, 31, 37, 38 LEFT_BRAIN before analyzing : 25, 32, 40, 61 after analyzing : 25, 37, 40, 43 OTHER before analyzing : 4, 6, 67, 91 after analyzing : 4, 46, 67, 57 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.033, std = 0.071 curvature mean = 51.723, std = 20.274 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.45, sigma = 48.56 after rotation: sse = 24.45, sigma = 48.56 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.37, its var is 51.92 before Erosion-Dilatation 41.94% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 3780875 voxels, voxel volume = 1.000 mm3 = 3780875 mmm3 = 3780.875 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 20.917946 mri_watershed stimesec 0.263974 mri_watershed ru_maxrss 867352 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 219514 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 3192 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 147 mri_watershed done @#@FSTIME 2023:09:02:15:59:36 mri_watershed N 8 e 21.22 S 0.30 U 20.91 P 99% M 867352 F 0 R 219519 W 0 c 147 w 1 I 0 O 3192 L 0.37 0.49 0.50 @#@FSLOADPOST 2023:09:02:15:59:57 mri_watershed N 8 0.73 0.56 0.52 cp brainmask.auto.mgz brainmask.mgz Started at Sat Sep 2 15:59:36 EDT 2023 Ended at Sat Sep 2 15:59:58 EDT 2023 #@#%# recon-all-run-time-hours 0.006 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 15:59:58 EDT 2023 #New# invocation of recon-all Sat Sep 2 17:40:37 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects /home/aiisc/Downloads/freesurfer/bin/recon-all -all -subjid sub-032336_troubleshoot2_dup -no-isrunning subjid sub-032336_troubleshoot2_dup setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Actual FREESURFER_HOME /home/aiisc/Downloads/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 4089164 kbytes maxproc 127488 maxlocks unlimited maxsignal 127488 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 31Gi 2.0Gi 25Gi 686Mi 3.4Gi 28Gi Swap: 2.0Gi 0B 2.0Gi ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2023/09/02-21:40:37-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: aiisc Machine: aiisc-OptiPlex-3050 Platform: Linux PlatformVersion: 6.2.0-31-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/aiisc/Downloads/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/aiisc/Downloads/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Sat Sep 2 17:40:37 EDT 2023 Found 1 runs /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig/001.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup mri_convert /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz --conform mri_convert /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz --conform reading from /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 4060 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz... @#@FSTIME 2023:09:02:17:40:40 mri_convert N 3 e 2.51 S 0.04 U 2.45 P 99% M 60508 F 6 R 21978 W 0 c 14 w 5 I 776 O 11760 L 0.34 0.74 0.80 @#@FSLOADPOST 2023:09:02:17:40:43 mri_convert N 3 0.47 0.76 0.81 mri_add_xform_to_header -c /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach.xfm /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2023:09:02:17:40:43 mri_add_xform_to_header N 4 e 0.85 S 0.03 U 0.80 P 97% M 23296 F 17 R 4562 W 0 c 63 w 17 I 3120 O 11760 L 0.47 0.76 0.81 @#@FSLOADPOST 2023:09:02:17:40:44 mri_add_xform_to_header N 4 0.47 0.76 0.81 #-------------------------------------------- #@# Talairach Sat Sep 2 17:40:44 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri /home/aiisc/Downloads/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Sat Sep 2 17:40:44 EDT 2023 tmpdir is ./tmp.mri_nu_correct.mni.1063585 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1063585/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.1063585/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.1063585/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.1063585/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Sat Sep 2 17:43:22 EDT 2023 mri_nu_correct.mni done @#@FSTIME 2023:09:02:17:40:44 mri_nu_correct.mni N 12 e 158.53 S 0.45 U 158.05 P 99% M 506848 F 27 R 146432 W 0 c 956 w 121 I 4856 O 23408 L 0.47 0.76 0.81 @#@FSLOADPOST 2023:09:02:17:43:22 mri_nu_correct.mni N 12 1.47 1.05 0.91 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Sat Sep 2 17:43:22 EDT 2023 Ended at Sat Sep 2 17:43:41 EDT 2023 talairach_avi done @#@FSTIME 2023:09:02:17:43:22 talairach_avi N 4 e 18.68 S 1.00 U 11.55 P 67% M 255744 F 32 R 397748 W 0 c 666 w 271 I 272344 O 295264 L 1.47 1.05 0.91 @#@FSLOADPOST 2023:09:02:17:43:41 talairach_avi N 4 1.41 1.07 0.92 INFO: transforms/talairach.xfm already exists! The new transforms/talairach.auto.xfm will not be copied to transforms/talairach.xfm This is done to retain any edits made to transforms/talairach.xfm Add the -clean-tal flag to recon-all to overwrite transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Sat Sep 2 17:43:41 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.4699, pval=0.1049 >= threshold=0.0050) @#@FSTIME 2023:09:02:17:43:41 talairach_afd N 4 e 0.01 S 0.00 U 0.00 P 40% M 5632 F 14 R 214 W 0 c 1 w 17 I 2512 O 0 L 1.41 1.07 0.92 @#@FSLOADPOST 2023:09:02:17:43:41 talairach_afd N 4 1.41 1.07 0.92 awk -f /home/aiisc/Downloads/freesurfer/bin/extract_talairach_avi_QA.awk /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach_avi.log tal_QC_AZS /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach_avi.log TalAviQA: 0.96698 z-score: -2 #-------------------------------------------- #@# Nu Intensity Correction Sat Sep 2 17:43:41 EDT 2023 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri /home/aiisc/Downloads/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux Sat Sep 2 17:43:41 EDT 2023 tmpdir is ./tmp.mri_nu_correct.mni.1063920 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1063920/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.1063920/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1063920/ones.mgz 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.1063920/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1063920/ones.mgz sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc input ./tmp.mri_nu_correct.mni.1063920/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.1063920/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.1063920/ones.mgz Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1063920/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1063920/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1063920/input.mean.dat 7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1063920/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1063920/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1063920/input.mean.dat sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1063920/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.1063920/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1063920/ones.mgz --i ./tmp.mri_nu_correct.mni.1063920/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1063920/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1063920/output.mean.dat 7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1063920/ones.mgz --i ./tmp.mri_nu_correct.mni.1063920/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1063920/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1063920/output.mean.dat sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1063920/ones.mgz Loading ./tmp.mri_nu_correct.mni.1063920/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.1063920/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.1063920/nu0.mgz ./tmp.mri_nu_correct.mni.1063920/nu0.mgz mul 1.01019782604773735840 Saving result to './tmp.mri_nu_correct.mni.1063920/nu0.mgz' (type = MGH ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.1063920/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.1063920/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.1063920/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 5 seconds. mapping ( 3, 183) to ( 3, 110) Sat Sep 2 17:46:34 EDT 2023 mri_nu_correct.mni done @#@FSTIME 2023:09:02:17:43:41 mri_nu_correct.mni N 9 e 172.45 S 0.76 U 171.66 P 99% M 614056 F 38 R 512646 W 0 c 995 w 196 I 6688 O 59680 L 1.41 1.07 0.92 @#@FSLOADPOST 2023:09:02:17:46:34 mri_nu_correct.mni N 9 1.04 1.06 0.95 mri_add_xform_to_header -c /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2023:09:02:17:46:34 mri_add_xform_to_header N 4 e 0.79 S 0.01 U 0.77 P 99% M 23680 F 1 R 4576 W 0 c 7 w 2 I 256 O 10288 L 1.04 1.06 0.95 @#@FSLOADPOST 2023:09:02:17:46:35 mri_add_xform_to_header N 4 1.04 1.06 0.95 #-------------------------------------------- #@# Intensity Normalization Sat Sep 2 17:46:35 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_normalize -g 1 -seed 1234 -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/tmp/control.dat -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 using control points from file /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/tmp/control.dat... assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... Reading 1028 control points... only using 1026 control points from file, mean 105.6, scaling by 1.04... Doing gentle normalization with control points/label building Voronoi diagram... performing soap bubble smoothing, sigma = 8... talairach transform 1.21730 -0.01575 -0.03080 11.84346; 0.00894 0.94283 0.52692 -6.70541; 0.03030 -0.50311 1.10120 -46.03311; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 4 Starting OpenSpline(): npoints = 4 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 56 (55), valley at 40 (39) csf peak at 28, setting threshold to 46 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 56 (55), valley at 40 (39) csf peak at 28, setting threshold to 46 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 1 seconds. @#@FSTIME 2023:09:02:17:46:35 mri_normalize N 9 e 121.35 S 0.39 U 120.94 P 99% M 583080 F 7 R 316351 W 0 c 781 w 7 I 1296 O 10072 L 1.04 1.06 0.95 @#@FSLOADPOST 2023:09:02:17:48:36 mri_normalize N 9 1.04 1.05 0.97 #-------------------------------------------- #@# Skull Stripping Sat Sep 2 17:48:36 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -T1 -brain_atlas /home/aiisc/Downloads/freesurfer/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Keeping brain edits brainmask.auto.mgz brainmask.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=83 z=106 r=100 first estimation of the main basin volume: 4307066 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=113, y=80, z=67, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=2071770954 voxels, voxel volume =1.000 = 2071770954 mmm3 = 2071771.008 cm3 done. PostAnalyze...Basin Prior 187 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=156,y=129, z=163, r=100161 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=3, CSF_MAX=5 , nb = 37344 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=14 , nb = 144 LEFT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=76 , nb = 702 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=14 , nb = 5022 LEFT_BRAIN CSF_MIN=0, CSF_intensity=4, CSF_MAX=25 , nb = 9666 OTHER CSF_MIN=0, CSF_intensity=3, CSF_MAX=4 , nb = 18174 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 7, 39, 62 after analyzing : 5, 28, 39, 36 RIGHT_CER before analyzing : 14, 25, 45, 60 after analyzing : 14, 38, 45, 43 LEFT_CER before analyzing : 76, 46, 36, 61 after analyzing : 27, 46, 46, 49 RIGHT_BRAIN before analyzing : 14, 20, 37, 62 after analyzing : 14, 31, 37, 38 LEFT_BRAIN before analyzing : 25, 32, 40, 61 after analyzing : 25, 37, 40, 43 OTHER before analyzing : 4, 6, 67, 91 after analyzing : 4, 46, 67, 57 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...111 iterations *********************VALIDATION********************* curvature mean = 0.033, std = 0.071 curvature mean = 51.723, std = 20.274 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 24.45, sigma = 48.56 after rotation: sse = 24.45, sigma = 48.56 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 34.37, its var is 51.92 before Erosion-Dilatation 41.94% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...102 iterations mri_strip_skull: done peeling brain Brain Size = 3780875 voxels, voxel volume = 1.000 mm3 = 3780875 mmm3 = 3780.875 cm3 ****************************** Saving brainmask.auto.mgz Keeping edits ... Saving kept edits to brainmask.mgz ..... done mri_watershed utimesec 21.853051 mri_watershed stimesec 0.244011 mri_watershed ru_maxrss 901240 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 227986 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 0 mri_watershed ru_oublock 5528 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 0 mri_watershed ru_nivcsw 117 mri_watershed done @#@FSTIME 2023:09:02:17:48:36 mri_watershed N 10 e 22.14 S 0.28 U 21.85 P 99% M 901240 F 0 R 227990 W 0 c 117 w 1 I 0 O 5528 L 1.04 1.05 0.97 @#@FSLOADPOST 2023:09:02:17:48:58 mri_watershed N 10 1.02 1.05 0.97 INFO: brainmask.mgz already exists! It will not be overwritten. This is done to retain any edits made to brainmask.mgz. Add the -clean-bm flag to recon-all to overwrite brainmask.mgz. #------------------------------------- #@# EM Registration Sat Sep 2 17:48:58 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=23.0 skull bounding box = (67, 36, 31) --> (191, 155, 179) finding center of left hemi white matter using (108, 76, 105) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (93,61,87) --> (123, 90,123) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 107 +- 4.7 after smoothing, mri peak at 107, scaling input intensities by 1.000 scaling channel 0 by 1 initial log_p = -4.547 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.180592 @ (-10.526, 31.579, -10.526) max log p = -4.035943 @ (5.263, -5.263, 5.263) max log p = -4.035943 @ (0.000, 0.000, 0.000) max log p = -4.035943 @ (0.000, 0.000, 0.000) max log p = -4.030876 @ (7.237, -0.658, 3.289) max log p = -3.980027 @ (-6.250, 0.329, -0.987) max log p = -3.980027 @ (0.000, 0.000, 0.000) max log p = -3.980027 @ (0.000, 0.000, 0.000) Found translation: (-4.3, 26.0, -3.0): log p = -3.980 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.665, old_max_log_p =-3.980 (thresh=-4.0) 1.15000 0.00000 0.00000 -23.93808; 0.00000 1.08143 0.57781 -36.73459; 0.00000 -0.53750 0.85598 70.29944; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 52 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.665, old_max_log_p =-3.665 (thresh=-3.7) 1.15000 0.00000 0.00000 -23.93808; 0.00000 1.08143 0.57781 -36.73459; 0.00000 -0.53750 0.85598 70.29944; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 0 minutes and 51 seconds. **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.466, old_max_log_p =-3.665 (thresh=-3.7) 1.12792 -0.01439 0.02756 -20.51970; 0.00000 1.13516 0.53035 -38.92491; -0.04045 -0.48279 0.92482 60.17828; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 49 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.466, old_max_log_p =-3.466 (thresh=-3.5) 1.12792 -0.01439 0.02756 -20.51970; 0.00000 1.13516 0.53035 -38.92491; -0.04045 -0.48279 0.92482 60.17828; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 0 minutes and 49 seconds. **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.419, old_max_log_p =-3.466 (thresh=-3.5) 1.12447 -0.00677 0.01225 -19.20276; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; iteration took 0 minutes and 48 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.417, old_max_log_p =-3.419 (thresh=-3.4) 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.417 (old=-4.547) transform before final EM align: 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 009: -log(p) = 4.0 after pass:transform: ( 1.12, -0.01, 0.01, -18.69) ( 0.00, 1.14, 0.51, -39.20) ( -0.02, -0.46, 0.93, 55.31) IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESpass 2 through quasi-newton minimization... IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 011: -log(p) = 4.0 tol 0.000000 final transform: 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 781648 FSRUNTIME@ mri_em_register 0.1004 hours 1 threads registration took 6 minutes and 1 seconds. @#@FSTIME 2023:09:02:17:48:58 mri_em_register N 7 e 361.28 S 0.90 U 360.35 P 99% M 616496 F 8 R 166675 W 0 c 1536 w 10 I 141208 O 16 L 1.02 1.05 0.97 @#@FSLOADPOST 2023:09:02:17:54:59 mri_em_register N 7 1.09 1.04 1.01 #-------------------------------------- #@# CA Normalize Sat Sep 2 17:54:59 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.0 skull bounding box = (63, 36, 30) --> (192, 155, 179) finding center of left hemi white matter using (106, 76, 105) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (90,61,87) --> (121, 90,123) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 107 +- 4.6 after smoothing, mri peak at 107, scaling input intensities by 1.000 scaling channel 0 by 1 using 246437 sample points... INFO: compute sample coordinates transform 1.12052 -0.00675 0.01220 -18.68986; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30936; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (129, 37, 33) --> (188, 144, 187) Left_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0 0 of 52 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (71, 37, 33) --> (130, 138, 187) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 132.0 0 of 132 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (131, 115, 67) --> (174, 153, 117) Left_Cerebellum_White_Matter: limiting intensities to 100.0 --> 132.0 0 of 11 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (90, 115, 64) --> (129, 152, 117) Right_Cerebellum_White_Matter: limiting intensities to 106.0 --> 132.0 6 of 35 (17.1%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (114, 102, 96) --> (145, 156, 127) Brain_Stem: limiting intensities to 94.0 --> 132.0 0 of 17 (0.0%) samples deleted using 247 total control points for intensity normalization... bias field = 0.920 +- 0.097 0 of 241 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (129, 37, 33) --> (188, 144, 187) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 128 (0.8%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (71, 37, 33) --> (130, 138, 187) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 203 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (131, 115, 67) --> (174, 153, 117) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 7 of 71 (9.9%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (90, 115, 64) --> (129, 152, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 16 of 137 (11.7%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (114, 102, 96) --> (145, 156, 127) Brain_Stem: limiting intensities to 88.0 --> 132.0 29 of 86 (33.7%) samples deleted using 625 total control points for intensity normalization... bias field = 0.979 +- 0.073 0 of 566 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (129, 37, 33) --> (188, 144, 187) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 246 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (71, 37, 33) --> (130, 138, 187) Right_Cerebral_White_Matter: limiting intensities to 89.0 --> 117.0 9 of 296 (3.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (131, 115, 67) --> (174, 153, 117) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 47 of 119 (39.5%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (90, 115, 64) --> (129, 152, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 26 of 87 (29.9%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (114, 102, 96) --> (145, 156, 127) Brain_Stem: limiting intensities to 88.0 --> 132.0 90 of 173 (52.0%) samples deleted using 921 total control points for intensity normalization... bias field = 0.990 +- 0.060 0 of 740 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 1 seconds. @#@FSTIME 2023:09:02:17:54:59 mri_ca_normalize N 8 e 60.78 S 0.45 U 60.32 P 99% M 678528 F 8 R 407741 W 0 c 392 w 6 I 1088 O 3216 L 1.09 1.04 1.01 @#@FSLOADPOST 2023:09:02:17:56:00 mri_ca_normalize N 8 1.03 1.03 1.00 #-------------------------------------- #@# CA Reg Sat Sep 2 17:56:00 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca'... label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.156 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.16 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 1.00887 #FOTS# QuadFit found better minimum quadopt=(dt=235.297,rms=0.946295) vs oldopt=(dt=92.48,rms=0.967175) #GCMRL# 0 dt 235.297045 rms 0.946 6.202% neg 0 invalid 762 tFOTS 9.7430 tGradient 4.6150 tsec 15.1030 #FOTS# QuadFit found better minimum quadopt=(dt=183.061,rms=0.913736) vs oldopt=(dt=92.48,rms=0.922272) #GCMRL# 1 dt 183.061453 rms 0.914 3.441% neg 0 invalid 762 tFOTS 10.3530 tGradient 4.6410 tsec 15.7400 #FOTS# QuadFit found better minimum quadopt=(dt=206.884,rms=0.898515) vs oldopt=(dt=92.48,rms=0.903682) #GCMRL# 2 dt 206.883721 rms 0.899 1.666% neg 0 invalid 762 tFOTS 10.3170 tGradient 4.8390 tsec 15.9030 #FOTS# QuadFit found better minimum quadopt=(dt=215.579,rms=0.88723) vs oldopt=(dt=92.48,rms=0.891136) #GCMRL# 3 dt 215.578947 rms 0.887 1.256% neg 0 invalid 762 tFOTS 10.3680 tGradient 4.6820 tsec 15.7960 #FOTS# QuadFit found better minimum quadopt=(dt=143.059,rms=0.88107) vs oldopt=(dt=92.48,rms=0.882098) #GCMRL# 4 dt 143.058824 rms 0.881 0.694% neg 0 invalid 762 tFOTS 10.3300 tGradient 4.6560 tsec 15.7280 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.870294) vs oldopt=(dt=369.92,rms=0.871538) #GCMRL# 5 dt 517.888000 rms 0.870 1.223% neg 0 invalid 762 tFOTS 9.7600 tGradient 4.6490 tsec 15.1510 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.865888) vs oldopt=(dt=92.48,rms=0.865969) #GCMRL# 6 dt 110.976000 rms 0.866 0.506% neg 0 invalid 762 tFOTS 10.3510 tGradient 4.6120 tsec 15.7090 #FOTS# QuadFit found better minimum quadopt=(dt=2071.55,rms=0.850406) vs oldopt=(dt=1479.68,rms=0.85292) #GCMRL# 7 dt 2071.552000 rms 0.850 1.788% neg 0 invalid 762 tFOTS 10.3520 tGradient 4.6310 tsec 15.7280 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.847142) vs oldopt=(dt=92.48,rms=0.847214) #GCMRL# 8 dt 110.976000 rms 0.847 0.384% neg 0 invalid 762 tFOTS 10.3570 tGradient 4.6960 tsec 15.7990 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.844747) vs oldopt=(dt=369.92,rms=0.845077) #GCMRL# 9 dt 517.888000 rms 0.845 0.283% neg 0 invalid 762 tFOTS 10.3380 tGradient 4.6590 tsec 15.7450 #GCMRL# 10 dt 92.480000 rms 0.844 0.000% neg 0 invalid 762 tFOTS 10.3710 tGradient 4.6860 tsec 15.8210 #GCMRL# 11 dt 92.480000 rms 0.844 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7320 tsec 5.4830 #GCMRL# 12 dt 92.480000 rms 0.844 0.051% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6680 tsec 5.4290 #GCMRL# 13 dt 92.480000 rms 0.843 0.075% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6700 tsec 5.4150 #GCMRL# 14 dt 92.480000 rms 0.842 0.106% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6830 tsec 5.4270 #GCMRL# 15 dt 92.480000 rms 0.841 0.133% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6960 tsec 5.4440 #GCMRL# 16 dt 92.480000 rms 0.840 0.152% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6910 tsec 5.4360 #GCMRL# 17 dt 92.480000 rms 0.838 0.169% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6640 tsec 5.4060 #GCMRL# 18 dt 92.480000 rms 0.837 0.187% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7070 tsec 5.4530 #GCMRL# 19 dt 92.480000 rms 0.835 0.200% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7060 tsec 5.4520 #GCMRL# 20 dt 92.480000 rms 0.833 0.196% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6780 tsec 5.4250 #GCMRL# 21 dt 92.480000 rms 0.832 0.193% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6890 tsec 5.4350 #GCMRL# 22 dt 92.480000 rms 0.830 0.194% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6760 tsec 5.4220 #GCMRL# 23 dt 92.480000 rms 0.829 0.189% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6870 tsec 5.4350 #GCMRL# 24 dt 92.480000 rms 0.827 0.185% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6530 tsec 5.3960 #GCMRL# 25 dt 92.480000 rms 0.826 0.176% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6700 tsec 5.4180 #GCMRL# 26 dt 92.480000 rms 0.824 0.167% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6490 tsec 5.3920 #GCMRL# 27 dt 92.480000 rms 0.823 0.162% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6640 tsec 5.4080 #GCMRL# 28 dt 92.480000 rms 0.822 0.153% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6780 tsec 5.4230 #GCMRL# 29 dt 92.480000 rms 0.820 0.138% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6120 tsec 5.3570 #GCMRL# 30 dt 92.480000 rms 0.819 0.130% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6330 tsec 5.3760 #GCMRL# 31 dt 92.480000 rms 0.818 0.124% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6160 tsec 5.3610 #GCMRL# 32 dt 92.480000 rms 0.817 0.115% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6050 tsec 5.3680 #FOTS# QuadFit found better minimum quadopt=(dt=2071.55,rms=0.816583) vs oldopt=(dt=1479.68,rms=0.816755) #GCMRL# 33 dt 2071.552000 rms 0.817 0.000% neg 0 invalid 762 tFOTS 10.9640 tGradient 4.5900 tsec 16.3190 #GCAMreg# pass 0 level1 5 level2 1 tsec 317.148 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.16 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.817332 #FOTS# QuadFit found better minimum quadopt=(dt=55.488,rms=0.816522) vs oldopt=(dt=92.48,rms=0.81654) #GCMRL# 35 dt 55.488000 rms 0.817 0.099% neg 0 invalid 762 tFOTS 10.3680 tGradient 4.6480 tsec 15.7590 #FOTS# QuadFit found better minimum quadopt=(dt=32.368,rms=0.816504) vs oldopt=(dt=23.12,rms=0.816506) #GCMRL# 36 dt 32.368000 rms 0.817 0.000% neg 0 invalid 762 tFOTS 10.9230 tGradient 4.6340 tsec 16.3200 #GCMRL# 37 dt 32.368000 rms 0.816 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6830 tsec 5.4290 setting smoothness cost coefficient to 0.615 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.62 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.828074 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.825981) vs oldopt=(dt=25.92,rms=0.82623) #GCMRL# 39 dt 36.288000 rms 0.826 0.253% neg 0 invalid 762 tFOTS 10.3420 tGradient 3.4170 tsec 14.5060 #FOTS# QuadFit found better minimum quadopt=(dt=99.3684,rms=0.823488) vs oldopt=(dt=103.68,rms=0.8235) #GCMRL# 40 dt 99.368421 rms 0.823 0.302% neg 0 invalid 762 tFOTS 10.3230 tGradient 3.4400 tsec 14.5090 #FOTS# QuadFit found better minimum quadopt=(dt=580.608,rms=0.798224) vs oldopt=(dt=414.72,rms=0.80048) #GCMRL# 41 dt 580.608000 rms 0.798 3.068% neg 0 invalid 762 tFOTS 9.7160 tGradient 3.4350 tsec 13.8970 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.795761) vs oldopt=(dt=25.92,rms=0.796057) #GCMRL# 42 dt 36.288000 rms 0.796 0.309% neg 0 invalid 762 tFOTS 10.3460 tGradient 3.5080 tsec 14.6000 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.795294) vs oldopt=(dt=25.92,rms=0.795368) #GCMRL# 43 dt 36.288000 rms 0.795 0.000% neg 0 invalid 762 tFOTS 9.7390 tGradient 3.4180 tsec 13.9200 #GCMRL# 44 dt 36.288000 rms 0.795 0.067% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4230 tsec 4.1690 #GCMRL# 45 dt 36.288000 rms 0.794 0.100% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5010 tsec 4.2470 #GCMRL# 46 dt 36.288000 rms 0.793 0.114% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4640 tsec 4.2070 #GCMRL# 47 dt 36.288000 rms 0.792 0.138% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4700 tsec 4.2170 #GCMRL# 48 dt 36.288000 rms 0.791 0.159% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4390 tsec 4.1820 #GCMRL# 49 dt 36.288000 rms 0.790 0.140% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4630 tsec 4.2090 #GCMRL# 50 dt 36.288000 rms 0.789 0.108% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4470 tsec 4.1970 #GCMRL# 51 dt 36.288000 rms 0.788 0.086% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3810 tsec 4.1390 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.787407) vs oldopt=(dt=103.68,rms=0.787465) #GCMRL# 52 dt 145.152000 rms 0.787 0.000% neg 0 invalid 762 tFOTS 10.3570 tGradient 3.3420 tsec 14.4620 #GCMRL# 53 dt 145.152000 rms 0.784 0.370% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4310 tsec 4.1840 #GCMRL# 54 dt 145.152000 rms 0.783 0.126% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3980 tsec 4.1440 #GCMRL# 55 dt 145.152000 rms 0.782 0.181% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4350 tsec 4.1770 #GCMRL# 56 dt 145.152000 rms 0.779 0.376% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4840 tsec 4.2300 #GCMRL# 57 dt 145.152000 rms 0.777 0.211% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3670 tsec 4.1150 #GCMRL# 58 dt 145.152000 rms 0.776 0.189% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4300 tsec 4.1720 #GCMRL# 59 dt 145.152000 rms 0.775 0.150% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4490 tsec 4.1950 #GCMRL# 60 dt 145.152000 rms 0.773 0.198% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4760 tsec 4.2200 #GCMRL# 61 dt 145.152000 rms 0.771 0.238% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4300 tsec 4.1720 #GCMRL# 62 dt 145.152000 rms 0.770 0.196% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3940 tsec 4.1410 #GCMRL# 63 dt 145.152000 rms 0.768 0.287% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3920 tsec 4.1350 #GCMRL# 64 dt 145.152000 rms 0.767 0.139% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5040 tsec 4.2520 #GCMRL# 65 dt 145.152000 rms 0.766 0.089% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4650 tsec 4.2070 #GCMRL# 66 dt 145.152000 rms 0.765 0.096% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3500 tsec 4.0920 #GCMRL# 67 dt 145.152000 rms 0.765 -0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4550 tsec 4.9010 #GCAMreg# pass 0 level1 4 level2 1 tsec 201.357 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.62 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.765992 #GCMRL# 69 dt 0.000000 rms 0.765 0.097% neg 0 invalid 762 tFOTS 10.3730 tGradient 3.4580 tsec 14.5770 setting smoothness cost coefficient to 2.353 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.35 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.800007 #GCMRL# 71 dt 0.000000 rms 0.799 0.089% neg 0 invalid 762 tFOTS 9.1610 tGradient 2.9090 tsec 12.8180 #GCAMreg# pass 0 level1 3 level2 1 tsec 29.629 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.35 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.800007 #GCMRL# 73 dt 0.000000 rms 0.799 0.089% neg 0 invalid 762 tFOTS 9.1400 tGradient 2.9220 tsec 12.8060 setting smoothness cost coefficient to 8.000 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=8.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.901739 #FOTS# QuadFit found better minimum quadopt=(dt=2.0542,rms=0.881288) vs oldopt=(dt=2.88,rms=0.884308) #GCMRL# 75 dt 2.054198 rms 0.881 2.268% neg 0 invalid 762 tFOTS 9.7650 tGradient 2.6390 tsec 13.1490 #FOTS# QuadFit found better minimum quadopt=(dt=0.644444,rms=0.880689) vs oldopt=(dt=0.72,rms=0.880698) #GCMRL# 76 dt 0.644444 rms 0.881 0.000% neg 0 invalid 762 tFOTS 9.7480 tGradient 2.5350 tsec 13.0450 #GCAMreg# pass 0 level1 2 level2 1 tsec 33.514 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=8.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.88126 #FOTS# QuadFit found better minimum quadopt=(dt=0.054,rms=0.880683) vs oldopt=(dt=0.045,rms=0.880683) #GCMRL# 78 dt 0.054000 rms 0.881 0.065% neg 0 invalid 762 tFOTS 9.7530 tGradient 2.5520 tsec 13.0480 #FOTS# QuadFit found better minimum quadopt=(dt=0.0039375,rms=0.88068) vs oldopt=(dt=0.0028125,rms=0.88068) #GCMRL# 79 dt 0.003938 rms 0.881 0.000% neg 0 invalid 762 tFOTS 9.1400 tGradient 2.5710 tsec 12.4690 #GCMRL# 80 dt 0.003938 rms 0.881 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.6070 tsec 3.3530 setting smoothness cost coefficient to 20.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=20.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.993205 #FOTS# QuadFit found better minimum quadopt=(dt=0.961514,rms=0.980896) vs oldopt=(dt=1.28,rms=0.981913) #GCMRL# 82 dt 0.961514 rms 0.981 1.239% neg 0 invalid 762 tFOTS 9.7630 tGradient 2.4230 tsec 12.9360 #FOTS# QuadFit found better minimum quadopt=(dt=0.460656,rms=0.971912) vs oldopt=(dt=0.32,rms=0.973068) #GCMRL# 83 dt 0.460656 rms 0.972 0.916% neg 0 invalid 762 tFOTS 9.7550 tGradient 2.4010 tsec 12.9030 #GCMRL# 84 dt 0.320000 rms 0.969 0.330% neg 0 invalid 762 tFOTS 9.7620 tGradient 2.3660 tsec 12.8760 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.965088) vs oldopt=(dt=0.32,rms=0.965307) #GCMRL# 85 dt 0.448000 rms 0.965 0.374% neg 0 invalid 762 tFOTS 9.7570 tGradient 2.4370 tsec 12.9390 #FOTS# QuadFit found better minimum quadopt=(dt=0.256,rms=0.962745) vs oldopt=(dt=0.32,rms=0.963066) #GCMRL# 86 dt 0.256000 rms 0.963 0.000% neg 0 invalid 762 tFOTS 9.7640 tGradient 2.4210 tsec 12.9470 #GCMRL# 87 dt 0.256000 rms 0.961 0.201% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4180 tsec 3.1600 #GCMRL# 88 dt 0.256000 rms 0.959 0.222% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4900 tsec 3.2310 #GCMRL# 89 dt 0.256000 rms 0.956 0.231% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4350 tsec 3.1770 #GCMRL# 90 dt 0.256000 rms 0.956 0.061% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4280 tsec 3.1710 #GCMRL# 91 dt 0.256000 rms 0.956 0.005% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4180 tsec 3.1770 #GCMRL# 92 dt 1.280000 rms 0.952 0.388% neg 0 invalid 762 tFOTS 9.7390 tGradient 2.4130 tsec 12.8970 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.950875) vs oldopt=(dt=0.08,rms=0.951117) #GCMRL# 93 dt 0.112000 rms 0.951 0.000% neg 0 invalid 762 tFOTS 9.7450 tGradient 2.3830 tsec 12.8910 #GCMRL# 94 dt 0.112000 rms 0.951 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3770 tsec 3.1180 #GCMRL# 95 dt 0.112000 rms 0.950 0.014% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3810 tsec 3.1240 #GCAMreg# pass 0 level1 1 level2 1 tsec 119.705 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=20.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.951075 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.949794) vs oldopt=(dt=0.32,rms=0.949842) #GCMRL# 97 dt 0.448000 rms 0.950 0.135% neg 0 invalid 762 tFOTS 9.7400 tGradient 2.4090 tsec 12.8920 #FOTS# QuadFit found better minimum quadopt=(dt=0.016,rms=0.949794) vs oldopt=(dt=0.02,rms=0.949794) #GCMRL# 98 dt 0.016000 rms 0.950 0.000% neg 0 invalid 762 tFOTS 9.7710 tGradient 2.4340 tsec 12.9690 resetting metric properties... setting smoothness cost coefficient to 40.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=40.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.897621 #GCMRL# 100 dt 0.320000 rms 0.888 1.115% neg 0 invalid 762 tFOTS 9.7610 tGradient 1.9770 tsec 12.4830 #FOTS# QuadFit found better minimum quadopt=(dt=0.028,rms=0.887131) vs oldopt=(dt=0.02,rms=0.88719) #GCMRL# 101 dt 0.028000 rms 0.887 0.000% neg 0 invalid 762 tFOTS 9.7440 tGradient 1.9070 tsec 12.4140 #GCAMreg# pass 0 level1 0 level2 1 tsec 31.528 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=40.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.887789 #GCMRL# 103 dt 0.020000 rms 0.887 0.088% neg 0 invalid 762 tFOTS 9.7730 tGradient 1.9020 tsec 12.4160 #FOTS# QuadFit found better minimum quadopt=(dt=0.001,rms=0.887004) vs oldopt=(dt=0.00125,rms=0.887004) #GCMRL# 104 dt 0.001000 rms 0.887 0.000% neg 0 invalid 762 tFOTS 9.7240 tGradient 1.8900 tsec 12.3760 #GCMRL# 105 dt 0.001000 rms 0.887 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.9160 tsec 2.6670 GCAMregister done in 15.676 min Starting GCAmapRenormalizeWithAlignment() without scales renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10253 (16) mri peak = 0.30378 ( 6) Left_Lateral_Ventricle (4): linear fit = 0.26 x + 0.0 (1288 voxels, overlap=0.004) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (1288 voxels, peak = 4), gca=6.4 gca peak = 0.17690 (16) mri peak = 0.23252 ( 6) Right_Lateral_Ventricle (43): linear fit = 0.31 x + 0.0 (1000 voxels, overlap=0.005) Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (1000 voxels, peak = 5), gca=6.4 gca peak = 0.28275 (96) mri peak = 0.07181 (100) Right_Pallidum (52): linear fit = 1.03 x + 0.0 (551 voxels, overlap=1.008) Right_Pallidum (52): linear fit = 1.03 x + 0.0 (551 voxels, peak = 99), gca=99.4 gca peak = 0.18948 (93) mri peak = 0.11735 (95) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (396 voxels, overlap=1.004) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (396 voxels, peak = 94), gca=94.4 gca peak = 0.20755 (55) mri peak = 0.11479 (60) Right_Hippocampus (53): linear fit = 1.02 x + 0.0 (287 voxels, overlap=0.996) Right_Hippocampus (53): linear fit = 1.02 x + 0.0 (287 voxels, peak = 56), gca=56.4 gca peak = 0.31831 (58) mri peak = 0.09295 (57) Left_Hippocampus (17): linear fit = 0.96 x + 0.0 (313 voxels, overlap=0.996) Left_Hippocampus (17): linear fit = 0.96 x + 0.0 (313 voxels, peak = 56), gca=56.0 gca peak = 0.11957 (102) mri peak = 0.10134 (103) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (38923 voxels, overlap=0.711) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (38923 voxels, peak = 106), gca=105.6 gca peak = 0.11429 (102) mri peak = 0.09627 (103) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (39177 voxels, overlap=0.663) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (39177 voxels, peak = 106), gca=105.6 gca peak = 0.14521 (59) mri peak = 0.05495 (57) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (6261 voxels, overlap=0.994) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (6261 voxels, peak = 58), gca=58.1 gca peak = 0.14336 (58) mri peak = 0.05444 (62) Right_Cerebral_Cortex (42): linear fit = 1.04 x + 0.0 (6627 voxels, overlap=0.980) Right_Cerebral_Cortex (42): linear fit = 1.04 x + 0.0 (6627 voxels, peak = 61), gca=60.6 gca peak = 0.13305 (70) mri peak = 0.13640 (69) Right_Caudate (50): linear fit = 1.01 x + 0.0 (414 voxels, overlap=0.989) Right_Caudate (50): linear fit = 1.01 x + 0.0 (414 voxels, peak = 71), gca=71.0 gca peak = 0.15761 (71) mri peak = 0.10094 (70) Left_Caudate (11): linear fit = 0.98 x + 0.0 (425 voxels, overlap=0.949) Left_Caudate (11): linear fit = 0.98 x + 0.0 (425 voxels, peak = 69), gca=69.2 gca peak = 0.13537 (57) mri peak = 0.05661 (62) Left_Cerebellum_Cortex (8): linear fit = 1.10 x + 0.0 (4328 voxels, overlap=0.913) Left_Cerebellum_Cortex (8): linear fit = 1.10 x + 0.0 (4328 voxels, peak = 62), gca=62.4 gca peak = 0.13487 (56) mri peak = 0.05841 (61) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (4536 voxels, overlap=0.779) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (4536 voxels, peak = 62), gca=62.4 gca peak = 0.19040 (84) mri peak = 0.07858 (88) Left_Cerebellum_White_Matter (7): linear fit = 1.11 x + 0.0 (5477 voxels, overlap=0.669) Left_Cerebellum_White_Matter (7): linear fit = 1.11 x + 0.0 (5477 voxels, peak = 93), gca=92.8 gca peak = 0.18871 (83) mri peak = 0.08694 (88) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5033 voxels, overlap=0.634) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5033 voxels, peak = 89), gca=89.2 gca peak = 0.24248 (57) mri peak = 0.14890 (57) Left_Amygdala (18): linear fit = 0.99 x + 0.0 (250 voxels, overlap=0.998) Left_Amygdala (18): linear fit = 0.99 x + 0.0 (250 voxels, peak = 56), gca=56.1 gca peak = 0.35833 (56) mri peak = 0.09241 (60) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (305 voxels, overlap=0.996) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (305 voxels, peak = 59), gca=58.5 gca peak = 0.12897 (85) mri peak = 0.06943 (84) Left_Thalamus (10): linear fit = 0.95 x + 0.0 (3143 voxels, overlap=0.965) Left_Thalamus (10): linear fit = 0.95 x + 0.0 (3143 voxels, peak = 81), gca=81.2 gca peak = 0.13127 (83) mri peak = 0.08916 (77) Right_Thalamus (49): linear fit = 0.98 x + 0.0 (2119 voxels, overlap=0.893) Right_Thalamus (49): linear fit = 0.98 x + 0.0 (2119 voxels, peak = 81), gca=80.9 gca peak = 0.12974 (78) mri peak = 0.05742 (76) Left_Putamen (12): linear fit = 1.01 x + 0.0 (1234 voxels, overlap=0.999) Left_Putamen (12): linear fit = 1.01 x + 0.0 (1234 voxels, peak = 79), gca=79.2 gca peak = 0.17796 (79) mri peak = 0.05719 (81) Right_Putamen (51): linear fit = 1.01 x + 0.0 (1249 voxels, overlap=0.933) Right_Putamen (51): linear fit = 1.01 x + 0.0 (1249 voxels, peak = 80), gca=80.2 gca peak = 0.10999 (80) mri peak = 0.07880 (84) Brain_Stem (16): linear fit = 1.10 x + 0.0 (7326 voxels, overlap=0.416) Brain_Stem (16): linear fit = 1.10 x + 0.0 (7326 voxels, peak = 88), gca=87.6 gca peak = 0.13215 (88) mri peak = 0.06695 (93) Right_VentralDC (60): linear fit = 1.09 x + 0.0 (777 voxels, overlap=0.507) Right_VentralDC (60): linear fit = 1.09 x + 0.0 (777 voxels, peak = 95), gca=95.5 gca peak = 0.11941 (89) mri peak = 0.06152 (92) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (831 voxels, overlap=0.642) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (831 voxels, peak = 97), gca=97.5 gca peak = 0.20775 (25) mri peak = 0.18035 ( 6) Third_Ventricle (14): linear fit = 0.22 x + 0.0 (56 voxels, overlap=0.054) Third_Ventricle (14): linear fit = 0.22 x + 0.0 (56 voxels, peak = 5), gca=5.4 gca peak = 0.13297 (21) mri peak = 0.09363 ( 6) Fourth_Ventricle (15): linear fit = 0.31 x + 0.0 (197 voxels, overlap=0.112) Fourth_Ventricle (15): linear fit = 0.31 x + 0.0 (197 voxels, peak = 6), gca=6.4 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.19087 (28) gca peak Third_Ventricle = 0.20775 (25) gca peak Fourth_Ventricle = 0.13297 (21) gca peak CSF = 0.16821 (33) gca peak Left_Accumbens_area = 0.32850 (63) gca peak Left_undetermined = 0.98480 (28) gca peak Left_vessel = 0.40887 (53) gca peak Left_choroid_plexus = 0.10898 (46) gca peak Right_Inf_Lat_Vent = 0.17798 (26) gca peak Right_Accumbens_area = 0.30137 (64) gca peak Right_vessel = 0.47828 (52) gca peak Right_choroid_plexus = 0.11612 (45) gca peak Fifth_Ventricle = 0.59466 (35) gca peak WM_hypointensities = 0.10053 (78) gca peak non_WM_hypointensities = 0.07253 (60) gca peak Optic_Chiasm = 0.25330 (73) not using caudate to estimate GM means estimating mean gm scale to be 1.01 x + 0.0 estimating mean wm scale to be 1.03 x + 0.0 estimating mean csf scale to be 0.40 x + 0.0 saving intensity scales to talairach.label_intensities.txt GCAmapRenormalizeWithAlignment() took 2.93257 min noneg pre Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.910297 #FOTS# QuadFit found better minimum quadopt=(dt=297.173,rms=0.878849) vs oldopt=(dt=369.92,rms=0.880481) #GCMRL# 107 dt 297.173417 rms 0.879 3.455% neg 0 invalid 762 tFOTS 9.7300 tGradient 4.5730 tsec 15.0500 #FOTS# QuadFit found better minimum quadopt=(dt=246.645,rms=0.861846) vs oldopt=(dt=369.92,rms=0.865353) #GCMRL# 108 dt 246.644518 rms 0.862 1.935% neg 0 invalid 762 tFOTS 10.3540 tGradient 4.6160 tsec 15.7160 #GCMRL# 109 dt 92.480000 rms 0.859 0.348% neg 0 invalid 762 tFOTS 10.3310 tGradient 4.6560 tsec 15.7280 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.852564) vs oldopt=(dt=369.92,rms=0.853663) #GCMRL# 110 dt 517.888000 rms 0.853 0.732% neg 0 invalid 762 tFOTS 10.3510 tGradient 4.6240 tsec 15.7170 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.84475) vs oldopt=(dt=369.92,rms=0.844777) #GCMRL# 111 dt 295.936000 rms 0.845 0.917% neg 0 invalid 762 tFOTS 10.3640 tGradient 4.6980 tsec 15.8040 #FOTS# QuadFit found better minimum quadopt=(dt=55.488,rms=0.844289) vs oldopt=(dt=92.48,rms=0.844455) #GCMRL# 112 dt 55.488000 rms 0.844 0.055% neg 0 invalid 762 tFOTS 10.9470 tGradient 4.5980 tsec 16.2880 #FOTS# QuadFit found better minimum quadopt=(dt=73.984,rms=0.844129) vs oldopt=(dt=92.48,rms=0.844152) #GCMRL# 113 dt 73.984000 rms 0.844 0.000% neg 0 invalid 762 tFOTS 10.3480 tGradient 4.5790 tsec 15.6890 #GCMRL# 114 dt 73.984000 rms 0.844 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5900 tsec 5.3360 #GCMRL# 115 dt 73.984000 rms 0.843 0.097% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5940 tsec 5.3360 #GCMRL# 116 dt 73.984000 rms 0.842 0.167% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6030 tsec 5.3480 #GCMRL# 117 dt 73.984000 rms 0.839 0.258% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6660 tsec 5.4110 #GCMRL# 118 dt 73.984000 rms 0.837 0.329% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6010 tsec 5.3420 #GCMRL# 119 dt 73.984000 rms 0.834 0.349% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6080 tsec 5.3600 #GCMRL# 120 dt 73.984000 rms 0.831 0.339% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6120 tsec 5.3550 #GCMRL# 121 dt 73.984000 rms 0.828 0.302% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6160 tsec 5.3600 #GCMRL# 122 dt 73.984000 rms 0.826 0.272% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6590 tsec 5.4060 #GCMRL# 123 dt 73.984000 rms 0.824 0.271% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6280 tsec 5.3710 #GCMRL# 124 dt 73.984000 rms 0.821 0.287% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6190 tsec 5.3660 #GCMRL# 125 dt 73.984000 rms 0.819 0.291% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7880 tsec 5.5320 #GCMRL# 126 dt 73.984000 rms 0.817 0.268% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6290 tsec 5.3790 #GCMRL# 127 dt 73.984000 rms 0.815 0.264% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6010 tsec 5.3440 #GCMRL# 128 dt 73.984000 rms 0.813 0.229% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7140 tsec 5.4600 #GCMRL# 129 dt 73.984000 rms 0.811 0.200% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.8280 tsec 5.5690 #GCMRL# 130 dt 73.984000 rms 0.810 0.199% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.8560 tsec 5.6010 #GCMRL# 131 dt 73.984000 rms 0.808 0.193% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6420 tsec 5.3840 #GCMRL# 132 dt 73.984000 rms 0.806 0.194% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6480 tsec 5.3940 #GCMRL# 133 dt 73.984000 rms 0.805 0.195% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6540 tsec 5.3990 #GCMRL# 134 dt 73.984000 rms 0.803 0.182% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5840 tsec 5.3250 #GCMRL# 135 dt 73.984000 rms 0.802 0.162% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6400 tsec 5.3830 #GCMRL# 136 dt 73.984000 rms 0.801 0.149% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6360 tsec 5.3860 #GCMRL# 137 dt 73.984000 rms 0.800 0.131% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5780 tsec 5.3240 #GCMRL# 138 dt 73.984000 rms 0.799 0.122% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5650 tsec 5.3130 #GCMRL# 139 dt 73.984000 rms 0.798 0.121% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5900 tsec 5.3320 #GCMRL# 140 dt 73.984000 rms 0.797 0.121% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5840 tsec 5.3330 #GCMRL# 141 dt 73.984000 rms 0.796 0.118% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6260 tsec 5.3720 #GCMRL# 142 dt 73.984000 rms 0.795 0.106% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6190 tsec 5.3640 #GCMRL# 143 dt 73.984000 rms 0.794 0.102% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5640 tsec 5.3080 #GCMRL# 144 dt 73.984000 rms 0.794 0.102% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5520 tsec 5.2940 #GCMRL# 145 dt 73.984000 rms 0.793 0.101% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5620 tsec 5.3040 #GCMRL# 146 dt 73.984000 rms 0.792 0.096% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6060 tsec 5.3490 #GCMRL# 147 dt 73.984000 rms 0.791 0.091% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5890 tsec 5.3310 #GCMRL# 148 dt 73.984000 rms 0.791 0.084% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6070 tsec 5.3530 #GCMRL# 149 dt 73.984000 rms 0.790 0.080% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5910 tsec 5.3330 #GCMRL# 150 dt 73.984000 rms 0.789 0.075% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5430 tsec 5.2850 #GCMRL# 151 dt 73.984000 rms 0.789 0.075% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6040 tsec 5.3500 #GCMRL# 152 dt 73.984000 rms 0.788 0.074% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6090 tsec 5.3560 #GCMRL# 153 dt 73.984000 rms 0.788 0.075% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5720 tsec 5.3180 #GCMRL# 154 dt 73.984000 rms 0.787 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6040 tsec 5.3480 #GCMRL# 155 dt 73.984000 rms 0.787 0.065% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5790 tsec 5.3330 #GCMRL# 156 dt 73.984000 rms 0.786 0.065% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6100 tsec 5.3550 #GCMRL# 157 dt 73.984000 rms 0.786 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5280 tsec 5.2700 #GCMRL# 158 dt 73.984000 rms 0.785 0.065% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5860 tsec 5.3270 #GCMRL# 159 dt 73.984000 rms 0.785 0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5610 tsec 5.3030 #GCMRL# 160 dt 73.984000 rms 0.784 0.063% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5840 tsec 5.3300 #GCMRL# 161 dt 73.984000 rms 0.784 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5950 tsec 5.3430 #GCMRL# 162 dt 73.984000 rms 0.783 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5540 tsec 5.2980 #GCMRL# 163 dt 73.984000 rms 0.783 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5270 tsec 5.2700 #GCMRL# 164 dt 73.984000 rms 0.782 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5630 tsec 5.3100 #GCMRL# 165 dt 73.984000 rms 0.782 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5860 tsec 5.3310 #GCMRL# 166 dt 73.984000 rms 0.781 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6930 tsec 5.4360 #GCMRL# 167 dt 73.984000 rms 0.781 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5960 tsec 5.3430 #GCMRL# 168 dt 73.984000 rms 0.780 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5860 tsec 5.3290 #GCMRL# 169 dt 73.984000 rms 0.780 0.051% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5760 tsec 5.3200 #GCMRL# 170 dt 73.984000 rms 0.780 0.048% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5880 tsec 5.3360 #GCMRL# 171 dt 73.984000 rms 0.779 0.048% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5770 tsec 5.3210 #GCMRL# 172 dt 73.984000 rms 0.779 0.046% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5830 tsec 5.3270 #GCMRL# 173 dt 73.984000 rms 0.779 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5700 tsec 5.3160 #GCMRL# 174 dt 73.984000 rms 0.778 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5780 tsec 5.3220 #GCMRL# 175 dt 73.984000 rms 0.778 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5930 tsec 5.3400 #GCMRL# 176 dt 73.984000 rms 0.778 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6360 tsec 5.3850 #GCMRL# 177 dt 73.984000 rms 0.777 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5610 tsec 5.3070 #GCMRL# 178 dt 73.984000 rms 0.777 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5380 tsec 5.2850 #GCMRL# 179 dt 73.984000 rms 0.777 0.049% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7560 tsec 5.5040 #GCMRL# 180 dt 73.984000 rms 0.776 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.8090 tsec 5.5520 #GCMRL# 181 dt 73.984000 rms 0.776 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7780 tsec 5.5260 #GCMRL# 182 dt 73.984000 rms 0.776 0.039% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7290 tsec 5.4700 #GCMRL# 183 dt 73.984000 rms 0.775 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7160 tsec 5.4630 #GCMRL# 184 dt 73.984000 rms 0.775 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7310 tsec 5.4740 #GCMRL# 185 dt 73.984000 rms 0.775 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7610 tsec 5.5070 #GCMRL# 186 dt 73.984000 rms 0.774 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7970 tsec 5.5420 #GCMRL# 187 dt 73.984000 rms 0.774 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7560 tsec 5.5020 #GCMRL# 188 dt 73.984000 rms 0.774 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7600 tsec 5.5080 #GCMRL# 189 dt 73.984000 rms 0.774 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7640 tsec 5.5100 #GCMRL# 190 dt 73.984000 rms 0.773 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7540 tsec 5.5000 #GCMRL# 191 dt 73.984000 rms 0.773 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7440 tsec 5.4870 #GCMRL# 192 dt 73.984000 rms 0.773 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7550 tsec 5.5020 #GCMRL# 193 dt 73.984000 rms 0.773 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7570 tsec 5.5010 #GCMRL# 194 dt 73.984000 rms 0.773 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7180 tsec 5.4600 #GCMRL# 195 dt 73.984000 rms 0.772 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7230 tsec 5.4660 #GCMRL# 196 dt 73.984000 rms 0.772 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7820 tsec 5.5300 #GCMRL# 197 dt 73.984000 rms 0.772 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7710 tsec 5.5180 #GCMRL# 198 dt 73.984000 rms 0.772 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7690 tsec 5.5180 #GCMRL# 199 dt 73.984000 rms 0.772 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7710 tsec 5.5170 #GCMRL# 200 dt 73.984000 rms 0.771 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7970 tsec 5.5430 #GCMRL# 201 dt 73.984000 rms 0.771 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7520 tsec 5.4940 #GCMRL# 202 dt 73.984000 rms 0.771 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7660 tsec 5.5090 #GCMRL# 203 dt 73.984000 rms 0.771 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7720 tsec 5.5150 #GCMRL# 204 dt 73.984000 rms 0.771 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7690 tsec 5.5110 #GCMRL# 205 dt 73.984000 rms 0.770 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7490 tsec 5.4910 #GCMRL# 206 dt 73.984000 rms 0.770 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7590 tsec 5.5060 #GCMRL# 207 dt 73.984000 rms 0.770 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7790 tsec 5.5270 #GCMRL# 208 dt 73.984000 rms 0.770 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7760 tsec 5.5230 #GCMRL# 209 dt 73.984000 rms 0.769 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.8200 tsec 5.5650 #GCMRL# 210 dt 73.984000 rms 0.769 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7890 tsec 5.5360 #GCMRL# 211 dt 73.984000 rms 0.769 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7890 tsec 5.5380 #GCMRL# 212 dt 73.984000 rms 0.769 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.8120 tsec 5.5570 #GCMRL# 213 dt 73.984000 rms 0.769 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7690 tsec 5.5140 #GCMRL# 214 dt 73.984000 rms 0.768 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7800 tsec 5.5220 #GCMRL# 215 dt 73.984000 rms 0.768 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7900 tsec 5.5330 #GCMRL# 216 dt 73.984000 rms 0.768 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7950 tsec 5.5410 #GCMRL# 217 dt 73.984000 rms 0.768 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7730 tsec 5.5210 #GCMRL# 218 dt 73.984000 rms 0.768 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7950 tsec 5.5420 #GCMRL# 219 dt 73.984000 rms 0.767 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7730 tsec 5.5370 #FOTS# QuadFit found better minimum quadopt=(dt=28409.9,rms=0.763067) vs oldopt=(dt=23674.9,rms=0.763256) #GCMRL# 220 dt 28409.856000 rms 0.763 0.558% neg 0 invalid 762 tFOTS 10.9620 tGradient 4.7510 tsec 16.4590 #GCMRL# 221 dt 92.480000 rms 0.761 0.264% neg 0 invalid 762 tFOTS 10.3590 tGradient 4.6050 tsec 15.7110 #GCMRL# 222 dt 92.480000 rms 0.761 0.000% neg 0 invalid 762 tFOTS 10.3520 tGradient 4.7950 tsec 15.9110 #GCMRL# 223 dt 92.480000 rms 0.761 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.8130 tsec 5.5560 #GCAMreg# pass 0 level1 5 level2 1 tsec 747.285 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.761727 #GCMRL# 225 dt 92.480000 rms 0.761 0.133% neg 0 invalid 762 tFOTS 10.3350 tGradient 4.8260 tsec 15.9030 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.7604) vs oldopt=(dt=369.92,rms=0.760407) #GCMRL# 226 dt 295.936000 rms 0.760 0.000% neg 0 invalid 762 tFOTS 10.3360 tGradient 4.7590 tsec 15.8580 #GCMRL# 227 dt 295.936000 rms 0.760 0.076% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7630 tsec 5.5100 #GCMRL# 228 dt 295.936000 rms 0.760 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7950 tsec 5.5420 #GCMRL# 229 dt 295.936000 rms 0.759 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.7950 tsec 5.5430 #GCMRL# 230 dt 295.936000 rms 0.759 0.089% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6290 tsec 5.3720 #GCMRL# 231 dt 295.936000 rms 0.758 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6060 tsec 5.3510 #GCMRL# 232 dt 295.936000 rms 0.758 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6130 tsec 5.3590 #GCMRL# 233 dt 295.936000 rms 0.757 0.110% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.6130 tsec 5.3590 #GCMRL# 234 dt 295.936000 rms 0.757 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5980 tsec 5.3450 #GCMRL# 235 dt 295.936000 rms 0.757 0.007% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5180 tsec 5.2610 #GCMRL# 236 dt 295.936000 rms 0.756 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5680 tsec 5.3150 #GCMRL# 237 dt 295.936000 rms 0.756 -0.013% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5460 tsec 5.9910 #FOTS# QuadFit found better minimum quadopt=(dt=0.0180625,rms=0.756491) vs oldopt=(dt=0.0225781,rms=0.756491) #GCMRL# 238 dt 0.018063 rms 0.756 0.000% neg 0 invalid 762 tFOTS 11.5250 tGradient 4.5470 tsec 16.8150 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.759151 #FOTS# QuadFit found better minimum quadopt=(dt=227.278,rms=0.748518) vs oldopt=(dt=103.68,rms=0.751074) #GCMRL# 240 dt 227.278049 rms 0.749 1.401% neg 0 invalid 762 tFOTS 10.3640 tGradient 3.3490 tsec 14.4610 #FOTS# QuadFit found better minimum quadopt=(dt=123.474,rms=0.738616) vs oldopt=(dt=103.68,rms=0.73883) #GCMRL# 241 dt 123.473833 rms 0.739 1.323% neg 0 invalid 762 tFOTS 10.3430 tGradient 3.4170 tsec 14.5020 #FOTS# QuadFit found better minimum quadopt=(dt=82.4,rms=0.73557) vs oldopt=(dt=25.92,rms=0.736204) #GCMRL# 242 dt 82.400000 rms 0.736 0.412% neg 0 invalid 762 tFOTS 10.3410 tGradient 3.3730 tsec 14.4600 #FOTS# QuadFit found better minimum quadopt=(dt=124.416,rms=0.729962) vs oldopt=(dt=103.68,rms=0.730154) #GCMRL# 243 dt 124.416000 rms 0.730 0.762% neg 0 invalid 762 tFOTS 10.3630 tGradient 3.3980 tsec 14.5070 #FOTS# QuadFit found better minimum quadopt=(dt=68.3636,rms=0.727538) vs oldopt=(dt=25.92,rms=0.727977) #GCMRL# 244 dt 68.363636 rms 0.728 0.332% neg 0 invalid 762 tFOTS 10.3370 tGradient 3.3920 tsec 14.4710 #FOTS# QuadFit found better minimum quadopt=(dt=171.172,rms=0.7228) vs oldopt=(dt=103.68,rms=0.723453) #GCMRL# 245 dt 171.171598 rms 0.723 0.651% neg 0 invalid 762 tFOTS 10.3630 tGradient 3.3690 tsec 14.4790 #FOTS# QuadFit found better minimum quadopt=(dt=57,rms=0.720059) vs oldopt=(dt=25.92,rms=0.72056) #GCMRL# 246 dt 57.000000 rms 0.720 0.379% neg 0 invalid 762 tFOTS 10.3710 tGradient 3.4040 tsec 14.5210 #GCMRL# 247 dt 414.720000 rms 0.714 0.862% neg 0 invalid 762 tFOTS 9.7400 tGradient 3.3730 tsec 13.8550 #FOTS# QuadFit found better minimum quadopt=(dt=55.1545,rms=0.708829) vs oldopt=(dt=25.92,rms=0.70987) #GCMRL# 248 dt 55.154472 rms 0.709 0.704% neg 0 invalid 762 tFOTS 10.3520 tGradient 3.3540 tsec 14.4520 #FOTS# QuadFit found better minimum quadopt=(dt=497.664,rms=0.703742) vs oldopt=(dt=414.72,rms=0.703924) #GCMRL# 249 dt 497.664000 rms 0.704 0.718% neg 0 invalid 762 tFOTS 10.3270 tGradient 3.3820 tsec 14.4550 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.699968) vs oldopt=(dt=25.92,rms=0.70065) #GCMRL# 250 dt 36.288000 rms 0.700 0.536% neg 0 invalid 762 tFOTS 10.3730 tGradient 3.3720 tsec 14.4910 #FOTS# QuadFit found better minimum quadopt=(dt=89,rms=0.698921) vs oldopt=(dt=103.68,rms=0.698949) #GCMRL# 251 dt 89.000000 rms 0.699 0.150% neg 0 invalid 762 tFOTS 10.9750 tGradient 3.3430 tsec 15.0640 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.697152) vs oldopt=(dt=103.68,rms=0.697272) #GCMRL# 252 dt 145.152000 rms 0.697 0.253% neg 0 invalid 762 tFOTS 9.7470 tGradient 3.3570 tsec 13.8500 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.696219) vs oldopt=(dt=25.92,rms=0.696368) #GCMRL# 253 dt 36.288000 rms 0.696 0.134% neg 0 invalid 762 tFOTS 10.9520 tGradient 3.3920 tsec 15.0890 #FOTS# QuadFit found better minimum quadopt=(dt=331.776,rms=0.69434) vs oldopt=(dt=414.72,rms=0.694502) #GCMRL# 254 dt 331.776000 rms 0.694 0.270% neg 0 invalid 762 tFOTS 10.3630 tGradient 3.3340 tsec 14.4430 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.69216) vs oldopt=(dt=25.92,rms=0.692594) #GCMRL# 255 dt 36.288000 rms 0.692 0.314% neg 0 invalid 762 tFOTS 10.3190 tGradient 3.3630 tsec 14.4250 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.690874) vs oldopt=(dt=103.68,rms=0.691078) #GCMRL# 256 dt 145.152000 rms 0.691 0.186% neg 0 invalid 762 tFOTS 9.7540 tGradient 3.3660 tsec 13.8610 #FOTS# QuadFit found better minimum quadopt=(dt=62.208,rms=0.690162) vs oldopt=(dt=103.68,rms=0.690371) #GCMRL# 257 dt 62.208000 rms 0.690 0.103% neg 0 invalid 762 tFOTS 10.9550 tGradient 3.3910 tsec 15.0930 #FOTS# QuadFit found better minimum quadopt=(dt=248.832,rms=0.688615) vs oldopt=(dt=414.72,rms=0.689086) #GCMRL# 258 dt 248.832000 rms 0.689 0.224% neg 0 invalid 762 tFOTS 10.3120 tGradient 3.3460 tsec 14.4040 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.68758) vs oldopt=(dt=25.92,rms=0.687717) #GCMRL# 259 dt 36.288000 rms 0.688 0.150% neg 0 invalid 762 tFOTS 10.3570 tGradient 3.3860 tsec 14.4860 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.686856) vs oldopt=(dt=103.68,rms=0.686977) #GCMRL# 260 dt 145.152000 rms 0.687 0.105% neg 0 invalid 762 tFOTS 10.3690 tGradient 3.4300 tsec 14.5440 #GCMRL# 261 dt 103.680000 rms 0.686 0.137% neg 0 invalid 762 tFOTS 9.7400 tGradient 3.4310 tsec 13.9170 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.685511) vs oldopt=(dt=25.92,rms=0.685569) #GCMRL# 262 dt 36.288000 rms 0.686 0.059% neg 0 invalid 762 tFOTS 10.3230 tGradient 3.3810 tsec 14.4500 #GCMRL# 263 dt 414.720000 rms 0.684 0.188% neg 0 invalid 762 tFOTS 10.3510 tGradient 3.4030 tsec 14.4950 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.682785) vs oldopt=(dt=25.92,rms=0.683104) #GCMRL# 264 dt 36.288000 rms 0.683 0.211% neg 0 invalid 762 tFOTS 10.3460 tGradient 3.4180 tsec 14.5160 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.681991) vs oldopt=(dt=103.68,rms=0.682066) #GCMRL# 265 dt 145.152000 rms 0.682 0.116% neg 0 invalid 762 tFOTS 10.3460 tGradient 3.4070 tsec 14.4950 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.681559) vs oldopt=(dt=25.92,rms=0.681623) #GCMRL# 266 dt 36.288000 rms 0.682 0.063% neg 0 invalid 762 tFOTS 10.3540 tGradient 3.3520 tsec 14.4490 #FOTS# QuadFit found better minimum quadopt=(dt=580.608,rms=0.680046) vs oldopt=(dt=414.72,rms=0.68021) #GCMRL# 267 dt 580.608000 rms 0.680 0.222% neg 0 invalid 762 tFOTS 10.3340 tGradient 3.4330 tsec 14.5110 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.67849) vs oldopt=(dt=25.92,rms=0.678848) #GCMRL# 268 dt 36.288000 rms 0.678 0.229% neg 0 invalid 762 tFOTS 10.3550 tGradient 3.3590 tsec 14.4600 #GCMRL# 269 dt 103.680000 rms 0.678 0.095% neg 0 invalid 762 tFOTS 10.3640 tGradient 3.3910 tsec 14.5010 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.677498) vs oldopt=(dt=25.92,rms=0.677551) #GCMRL# 270 dt 36.288000 rms 0.677 0.051% neg 0 invalid 762 tFOTS 10.3710 tGradient 3.3650 tsec 14.4850 #FOTS# QuadFit found better minimum quadopt=(dt=580.608,rms=0.676309) vs oldopt=(dt=414.72,rms=0.676453) #GCMRL# 271 dt 580.608000 rms 0.676 0.175% neg 0 invalid 762 tFOTS 10.3570 tGradient 3.3500 tsec 14.4510 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.675206) vs oldopt=(dt=25.92,rms=0.675471) #GCMRL# 272 dt 36.288000 rms 0.675 0.163% neg 0 invalid 762 tFOTS 9.7490 tGradient 3.3370 tsec 13.8300 #GCMRL# 273 dt 103.680000 rms 0.675 0.095% neg 0 invalid 762 tFOTS 10.3100 tGradient 3.3750 tsec 14.4270 #FOTS# QuadFit found better minimum quadopt=(dt=62.208,rms=0.674236) vs oldopt=(dt=103.68,rms=0.674328) #GCMRL# 274 dt 62.208000 rms 0.674 0.000% neg 0 invalid 762 tFOTS 9.7480 tGradient 3.3530 tsec 13.8590 #GCMRL# 275 dt 62.208000 rms 0.674 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3410 tsec 4.0900 #GCMRL# 276 dt 62.208000 rms 0.673 0.075% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3470 tsec 4.0900 #GCMRL# 277 dt 62.208000 rms 0.673 0.103% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3380 tsec 4.0810 #GCMRL# 278 dt 62.208000 rms 0.672 0.128% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3540 tsec 4.0990 #GCMRL# 279 dt 62.208000 rms 0.671 0.152% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3560 tsec 4.0980 #GCMRL# 280 dt 62.208000 rms 0.670 0.166% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3660 tsec 4.1120 #GCMRL# 281 dt 62.208000 rms 0.669 0.180% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3710 tsec 4.1160 #GCMRL# 282 dt 62.208000 rms 0.667 0.174% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3580 tsec 4.1000 #GCMRL# 283 dt 62.208000 rms 0.666 0.173% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3720 tsec 4.1170 #GCMRL# 284 dt 62.208000 rms 0.665 0.179% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3650 tsec 4.1070 #GCMRL# 285 dt 62.208000 rms 0.664 0.178% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3310 tsec 4.0740 #GCMRL# 286 dt 62.208000 rms 0.663 0.165% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3430 tsec 4.0890 #GCMRL# 287 dt 62.208000 rms 0.662 0.161% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3520 tsec 4.0930 #GCMRL# 288 dt 62.208000 rms 0.661 0.164% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3440 tsec 4.0920 #GCMRL# 289 dt 62.208000 rms 0.660 0.160% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3770 tsec 4.1210 #GCMRL# 290 dt 62.208000 rms 0.659 0.142% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3630 tsec 4.1060 #GCMRL# 291 dt 62.208000 rms 0.658 0.130% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3520 tsec 4.0930 #GCMRL# 292 dt 62.208000 rms 0.657 0.130% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3380 tsec 4.0830 #GCMRL# 293 dt 62.208000 rms 0.656 0.123% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3480 tsec 4.0960 #GCMRL# 294 dt 62.208000 rms 0.655 0.122% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3370 tsec 4.0830 #GCMRL# 295 dt 62.208000 rms 0.655 0.118% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3230 tsec 4.0640 #GCMRL# 296 dt 62.208000 rms 0.654 0.112% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3230 tsec 4.0660 #GCMRL# 297 dt 62.208000 rms 0.653 0.110% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3230 tsec 4.0640 #GCMRL# 298 dt 62.208000 rms 0.653 0.013% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3410 tsec 4.3970 #GCMRL# 299 dt 62.208000 rms 0.653 0.021% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3460 tsec 4.0910 #GCMRL# 300 dt 62.208000 rms 0.653 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3090 tsec 4.0530 #GCMRL# 301 dt 62.208000 rms 0.652 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3070 tsec 4.0480 #GCMRL# 302 dt 62.208000 rms 0.652 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3370 tsec 4.0830 #GCMRL# 303 dt 62.208000 rms 0.652 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3130 tsec 4.0560 #GCMRL# 304 dt 62.208000 rms 0.652 0.048% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3290 tsec 4.0710 #GCMRL# 305 dt 62.208000 rms 0.651 0.052% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3290 tsec 4.0700 #GCMRL# 306 dt 62.208000 rms 0.651 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3290 tsec 4.0740 #GCMRL# 307 dt 62.208000 rms 0.651 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3480 tsec 4.0920 #GCMRL# 308 dt 62.208000 rms 0.650 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3530 tsec 4.0950 #GCMRL# 309 dt 62.208000 rms 0.650 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3650 tsec 4.1120 #GCMRL# 310 dt 62.208000 rms 0.650 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4270 tsec 4.4810 #GCMRL# 311 dt 62.208000 rms 0.650 0.020% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3850 tsec 4.1310 #GCMRL# 312 dt 62.208000 rms 0.649 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3680 tsec 4.1120 #GCMRL# 313 dt 62.208000 rms 0.649 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3760 tsec 4.1190 #GCMRL# 314 dt 62.208000 rms 0.649 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3680 tsec 4.1130 #GCMRL# 315 dt 62.208000 rms 0.649 0.040% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3620 tsec 4.1100 #GCMRL# 316 dt 62.208000 rms 0.649 0.010% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3620 tsec 4.4120 #GCMRL# 317 dt 31.104000 rms 0.649 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3670 tsec 4.7300 #FOTS# QuadFit found better minimum quadopt=(dt=2.268,rms=0.648684) vs oldopt=(dt=1.62,rms=0.648685) #GCMRL# 318 dt 2.268000 rms 0.649 0.000% neg 0 invalid 762 tFOTS 7.9540 tGradient 3.3280 tsec 12.0440 #GCMRL# 319 dt 2.268000 rms 0.649 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3480 tsec 4.0930 #GCMRL# 320 dt 0.567000 rms 0.649 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3340 tsec 4.9860 #GCAMreg# pass 0 level1 4 level2 1 tsec 712.194 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.649496 #FOTS# QuadFit found better minimum quadopt=(dt=124.416,rms=0.646905) vs oldopt=(dt=103.68,rms=0.646937) #GCMRL# 322 dt 124.416000 rms 0.647 0.399% neg 0 invalid 762 tFOTS 9.7280 tGradient 3.3320 tsec 13.8060 #GCMRL# 323 dt 103.680000 rms 0.646 0.123% neg 0 invalid 762 tFOTS 9.7440 tGradient 3.3470 tsec 13.8340 #FOTS# QuadFit found better minimum quadopt=(dt=62.208,rms=0.645753) vs oldopt=(dt=103.68,rms=0.645877) #GCMRL# 324 dt 62.208000 rms 0.646 0.055% neg 0 invalid 762 tFOTS 10.3460 tGradient 3.4060 tsec 14.4970 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.645123) vs oldopt=(dt=103.68,rms=0.645225) #GCMRL# 325 dt 145.152000 rms 0.645 0.097% neg 0 invalid 762 tFOTS 10.3680 tGradient 3.3540 tsec 14.4680 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.644903) vs oldopt=(dt=25.92,rms=0.644941) #GCMRL# 326 dt 36.288000 rms 0.645 0.000% neg 0 invalid 762 tFOTS 10.9640 tGradient 3.3810 tsec 15.1080 #GCMRL# 327 dt 36.288000 rms 0.645 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3610 tsec 4.1020 #GCMRL# 328 dt 36.288000 rms 0.645 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3630 tsec 4.1040 #GCMRL# 329 dt 36.288000 rms 0.644 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3530 tsec 4.0940 #GCMRL# 330 dt 36.288000 rms 0.644 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3840 tsec 4.1260 #GCMRL# 331 dt 36.288000 rms 0.643 0.064% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3680 tsec 4.1140 #GCMRL# 332 dt 36.288000 rms 0.643 0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3700 tsec 4.1160 #GCMRL# 333 dt 36.288000 rms 0.642 0.074% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3660 tsec 4.1130 #GCMRL# 334 dt 36.288000 rms 0.642 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3750 tsec 4.1210 #GCMRL# 335 dt 36.288000 rms 0.642 0.065% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3600 tsec 4.1040 #GCMRL# 336 dt 36.288000 rms 0.641 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3560 tsec 4.1010 #GCMRL# 337 dt 36.288000 rms 0.641 0.061% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3650 tsec 4.1120 #GCMRL# 338 dt 36.288000 rms 0.640 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3540 tsec 4.1040 #GCMRL# 339 dt 36.288000 rms 0.640 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3490 tsec 4.0900 #GCMRL# 340 dt 36.288000 rms 0.640 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3410 tsec 4.0880 #GCMRL# 341 dt 36.288000 rms 0.639 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3180 tsec 4.0590 #GCMRL# 342 dt 36.288000 rms 0.639 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3170 tsec 4.0620 #GCMRL# 343 dt 36.288000 rms 0.639 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3100 tsec 4.0560 #GCMRL# 344 dt 36.288000 rms 0.638 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3140 tsec 4.0600 #GCMRL# 345 dt 36.288000 rms 0.638 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3310 tsec 4.0770 #GCMRL# 346 dt 36.288000 rms 0.638 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3510 tsec 4.0960 #GCMRL# 347 dt 36.288000 rms 0.637 0.054% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3340 tsec 4.0750 #GCMRL# 348 dt 36.288000 rms 0.637 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3330 tsec 4.0750 #GCMRL# 349 dt 36.288000 rms 0.637 0.052% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3070 tsec 4.0480 #GCMRL# 350 dt 36.288000 rms 0.636 0.052% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3260 tsec 4.0740 #GCMRL# 351 dt 36.288000 rms 0.636 0.052% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3230 tsec 4.0690 #GCMRL# 352 dt 36.288000 rms 0.636 0.048% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3260 tsec 4.0730 #GCMRL# 353 dt 36.288000 rms 0.635 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3350 tsec 4.0790 #GCMRL# 354 dt 36.288000 rms 0.635 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3380 tsec 4.0800 #GCMRL# 355 dt 36.288000 rms 0.635 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3190 tsec 4.0670 #GCMRL# 356 dt 36.288000 rms 0.634 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3100 tsec 4.0560 #GCMRL# 357 dt 36.288000 rms 0.634 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3150 tsec 4.0630 #GCMRL# 358 dt 36.288000 rms 0.634 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3220 tsec 4.0680 #GCMRL# 359 dt 36.288000 rms 0.634 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3080 tsec 4.0510 #GCMRL# 360 dt 36.288000 rms 0.633 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3190 tsec 4.0650 #GCMRL# 361 dt 36.288000 rms 0.633 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3270 tsec 4.0720 #GCMRL# 362 dt 36.288000 rms 0.633 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3070 tsec 4.0510 #GCMRL# 363 dt 36.288000 rms 0.632 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3110 tsec 4.0570 #GCMRL# 364 dt 36.288000 rms 0.632 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3370 tsec 4.0850 #GCMRL# 365 dt 36.288000 rms 0.632 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3160 tsec 4.0610 #GCMRL# 366 dt 36.288000 rms 0.632 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3160 tsec 4.0620 #GCMRL# 367 dt 36.288000 rms 0.631 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3130 tsec 4.0620 #GCMRL# 368 dt 36.288000 rms 0.631 0.035% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3240 tsec 4.0690 #GCMRL# 369 dt 36.288000 rms 0.631 0.035% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3150 tsec 4.0570 #GCMRL# 370 dt 36.288000 rms 0.631 0.040% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3220 tsec 4.0680 #GCMRL# 371 dt 36.288000 rms 0.631 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3180 tsec 4.0630 #GCMRL# 372 dt 36.288000 rms 0.630 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3250 tsec 4.0710 #GCMRL# 373 dt 36.288000 rms 0.630 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3130 tsec 4.0580 #GCMRL# 374 dt 36.288000 rms 0.630 0.035% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3230 tsec 4.0690 #GCMRL# 375 dt 36.288000 rms 0.630 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3100 tsec 4.0570 #GCMRL# 376 dt 36.288000 rms 0.629 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3260 tsec 4.0720 #GCMRL# 377 dt 36.288000 rms 0.629 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3430 tsec 4.0920 #GCMRL# 378 dt 36.288000 rms 0.629 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3240 tsec 4.0730 #GCMRL# 379 dt 36.288000 rms 0.629 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3220 tsec 4.0670 #GCMRL# 380 dt 36.288000 rms 0.629 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3200 tsec 4.0640 #GCMRL# 381 dt 36.288000 rms 0.629 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3160 tsec 4.0630 #GCMRL# 382 dt 36.288000 rms 0.628 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3150 tsec 4.0620 #GCMRL# 383 dt 36.288000 rms 0.628 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2990 tsec 4.0450 #GCMRL# 384 dt 36.288000 rms 0.628 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3140 tsec 4.0560 #GCMRL# 385 dt 36.288000 rms 0.628 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3240 tsec 4.0670 #GCMRL# 386 dt 36.288000 rms 0.628 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3230 tsec 4.0690 #GCMRL# 387 dt 36.288000 rms 0.627 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3250 tsec 4.0660 #GCMRL# 388 dt 36.288000 rms 0.627 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3060 tsec 4.3560 #GCMRL# 389 dt 36.288000 rms 0.627 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3320 tsec 4.0790 #GCMRL# 390 dt 36.288000 rms 0.627 0.008% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3110 tsec 4.0600 #GCMRL# 391 dt 36.288000 rms 0.627 0.009% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3130 tsec 4.0570 #GCMRL# 392 dt 18.144000 rms 0.627 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.3150 tsec 4.6830 #FOTS# QuadFit found better minimum quadopt=(dt=9.072,rms=0.627328) vs oldopt=(dt=6.48,rms=0.627329) setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.638365 #FOTS# QuadFit found better minimum quadopt=(dt=23.0857,rms=0.636432) vs oldopt=(dt=32,rms=0.636681) #GCMRL# 394 dt 23.085714 rms 0.636 0.303% neg 0 invalid 762 tFOTS 10.3370 tGradient 2.7640 tsec 13.8460 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.6346) vs oldopt=(dt=32,rms=0.634857) #GCMRL# 395 dt 44.800000 rms 0.635 0.288% neg 0 invalid 762 tFOTS 10.3450 tGradient 2.7800 tsec 13.8710 #FOTS# QuadFit found better minimum quadopt=(dt=166.088,rms=0.629291) vs oldopt=(dt=128,rms=0.629469) #GCMRL# 396 dt 166.087805 rms 0.629 0.837% neg 0 invalid 762 tFOTS 10.3570 tGradient 2.7670 tsec 13.8700 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.623873) vs oldopt=(dt=32,rms=0.624018) #GCMRL# 397 dt 38.400000 rms 0.624 0.861% neg 0 invalid 762 tFOTS 9.8160 tGradient 2.8240 tsec 13.4090 #FOTS# QuadFit found better minimum quadopt=(dt=21.6159,rms=0.622336) vs oldopt=(dt=32,rms=0.622668) #GCMRL# 398 dt 21.615894 rms 0.622 0.246% neg 0 invalid 762 tFOTS 9.8550 tGradient 2.8480 tsec 13.4540 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.619296) vs oldopt=(dt=32,rms=0.620049) #GCMRL# 399 dt 44.800000 rms 0.619 0.488% neg 0 invalid 762 tFOTS 9.7680 tGradient 2.7730 tsec 13.2870 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.618062) vs oldopt=(dt=32,rms=0.618213) #GCMRL# 400 dt 44.800000 rms 0.618 0.199% neg 0 invalid 762 tFOTS 10.3640 tGradient 2.7990 tsec 13.9090 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.616034) vs oldopt=(dt=32,rms=0.616252) #GCMRL# 401 dt 44.800000 rms 0.616 0.328% neg 0 invalid 762 tFOTS 9.7440 tGradient 2.7920 tsec 13.2830 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.614747) vs oldopt=(dt=32,rms=0.614776) #GCMRL# 402 dt 25.600000 rms 0.615 0.209% neg 0 invalid 762 tFOTS 9.7650 tGradient 2.7460 tsec 13.2540 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.613724) vs oldopt=(dt=32,rms=0.613823) #GCMRL# 403 dt 44.800000 rms 0.614 0.166% neg 0 invalid 762 tFOTS 9.7620 tGradient 2.7900 tsec 13.2940 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.612283) vs oldopt=(dt=32,rms=0.612293) #GCMRL# 404 dt 38.400000 rms 0.612 0.235% neg 0 invalid 762 tFOTS 9.7480 tGradient 2.7660 tsec 13.2600 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.611755) vs oldopt=(dt=8,rms=0.611873) #GCMRL# 405 dt 11.200000 rms 0.612 0.086% neg 0 invalid 762 tFOTS 9.7230 tGradient 2.8170 tsec 13.2820 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.611039) vs oldopt=(dt=32,rms=0.611056) #GCMRL# 406 dt 38.400000 rms 0.611 0.117% neg 0 invalid 762 tFOTS 9.7590 tGradient 2.8100 tsec 13.3160 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.609892) vs oldopt=(dt=32,rms=0.609901) #GCMRL# 407 dt 38.400000 rms 0.610 0.188% neg 0 invalid 762 tFOTS 9.7610 tGradient 2.8270 tsec 13.3330 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.609446) vs oldopt=(dt=8,rms=0.609529) #GCMRL# 408 dt 11.200000 rms 0.609 0.073% neg 0 invalid 762 tFOTS 9.7320 tGradient 2.8680 tsec 13.3420 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.608809) vs oldopt=(dt=32,rms=0.608853) #GCMRL# 409 dt 44.800000 rms 0.609 0.105% neg 0 invalid 762 tFOTS 9.7710 tGradient 2.8240 tsec 13.3390 #GCMRL# 410 dt 32.000000 rms 0.608 0.182% neg 0 invalid 762 tFOTS 9.7660 tGradient 2.8190 tsec 13.3350 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.607427) vs oldopt=(dt=8,rms=0.607485) #GCMRL# 411 dt 11.200000 rms 0.607 0.000% neg 0 invalid 762 tFOTS 9.7700 tGradient 2.8200 tsec 13.3520 #GCMRL# 412 dt 11.200000 rms 0.607 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7980 tsec 3.5410 #GCMRL# 413 dt 11.200000 rms 0.607 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8150 tsec 3.5630 #GCMRL# 414 dt 11.200000 rms 0.606 0.101% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8240 tsec 3.5690 #GCMRL# 415 dt 11.200000 rms 0.605 0.135% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7950 tsec 3.5370 #GCMRL# 416 dt 11.200000 rms 0.604 0.150% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8120 tsec 3.5590 #GCMRL# 417 dt 11.200000 rms 0.603 0.163% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8210 tsec 3.5670 #GCMRL# 418 dt 11.200000 rms 0.603 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7960 tsec 3.8510 #GCMRL# 419 dt 11.200000 rms 0.603 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8540 tsec 3.5960 #GCMRL# 420 dt 1.400000 rms 0.603 0.007% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8020 tsec 4.7490 #GCMRL# 421 dt 0.700000 rms 0.603 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7990 tsec 4.1710 #FOTS# QuadFit found better minimum quadopt=(dt=0.175,rms=0.602905) vs oldopt=(dt=0.125,rms=0.602906) #GCMRL# 422 dt 0.175000 rms 0.603 0.000% neg 0 invalid 762 tFOTS 7.4700 tGradient 2.8630 tsec 11.1040 #GCMRL# 423 dt 0.175000 rms 0.603 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8090 tsec 3.5590 #GCMRL# 424 dt 0.043750 rms 0.603 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8080 tsec 4.4560 #GCAMreg# pass 0 level1 3 level2 1 tsec 307.315 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.603713 #GCMRL# 426 dt 32.000000 rms 0.600 0.553% neg 0 invalid 762 tFOTS 9.7660 tGradient 2.8040 tsec 13.3160 #GCMRL# 427 dt 8.000000 rms 0.600 0.000% neg 0 invalid 762 tFOTS 9.1310 tGradient 2.7970 tsec 12.6920 #GCMRL# 428 dt 1.000000 rms 0.600 0.006% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7890 tsec 4.7330 #GCMRL# 429 dt 0.500000 rms 0.600 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8120 tsec 4.1630 #GCMRL# 430 dt 0.250000 rms 0.600 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.8130 tsec 4.1990 #FOTS# QuadFit found better minimum quadopt=(dt=0.0109375,rms=0.600018) vs oldopt=(dt=0.0078125,rms=0.600018) setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.626744 #GCMRL# 432 dt 0.000000 rms 0.626 0.116% neg 0 invalid 762 tFOTS 9.1720 tGradient 2.5200 tsec 12.4380 #GCMRL# 433 dt 0.150000 rms 0.626 0.000% neg 0 invalid 762 tFOTS 9.1580 tGradient 2.5340 tsec 13.1280 #GCAMreg# pass 0 level1 2 level2 1 tsec 32.85 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.626744 #GCMRL# 435 dt 0.000000 rms 0.626 0.116% neg 0 invalid 762 tFOTS 9.1230 tGradient 2.5230 tsec 12.3910 #GCMRL# 436 dt 0.150000 rms 0.626 0.000% neg 0 invalid 762 tFOTS 9.1360 tGradient 2.5150 tsec 13.0860 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.678638 #FOTS# QuadFit found better minimum quadopt=(dt=1.792,rms=0.672762) vs oldopt=(dt=1.28,rms=0.673108) #GCMRL# 438 dt 1.792000 rms 0.673 0.866% neg 0 invalid 762 tFOTS 9.1370 tGradient 2.3390 tsec 12.2210 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.672607) vs oldopt=(dt=0.32,rms=0.672614) #GCMRL# 439 dt 0.448000 rms 0.673 0.000% neg 0 invalid 762 tFOTS 9.1610 tGradient 2.3040 tsec 12.2270 #GCAMreg# pass 0 level1 1 level2 1 tsec 31.49 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.673231 #FOTS# QuadFit found better minimum quadopt=(dt=1.536,rms=0.670714) vs oldopt=(dt=1.28,rms=0.670802) #GCMRL# 441 dt 1.536000 rms 0.671 0.374% neg 0 invalid 762 tFOTS 9.1260 tGradient 2.2960 tsec 12.1690 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.670502) vs oldopt=(dt=0.32,rms=0.67054) #GCMRL# 442 dt 0.448000 rms 0.671 0.000% neg 0 invalid 762 tFOTS 9.1650 tGradient 2.3070 tsec 12.2330 #GCMRL# 443 dt 0.448000 rms 0.670 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3030 tsec 3.0480 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.616123 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.5925) vs oldopt=(dt=0.32,rms=0.598966) #GCMRL# 445 dt 0.448000 rms 0.592 3.834% neg 0 invalid 762 tFOTS 9.1390 tGradient 1.8570 tsec 11.7390 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.585262) vs oldopt=(dt=0.32,rms=0.587342) #GCMRL# 446 dt 0.448000 rms 0.585 1.222% neg 0 invalid 762 tFOTS 9.1530 tGradient 1.8620 tsec 11.7630 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.581063) vs oldopt=(dt=0.32,rms=0.582279) #GCMRL# 447 dt 0.448000 rms 0.581 0.717% neg 0 invalid 762 tFOTS 9.1440 tGradient 1.8530 tsec 11.7400 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.578721) vs oldopt=(dt=0.32,rms=0.579376) #GCMRL# 448 dt 0.448000 rms 0.579 0.403% neg 0 invalid 762 tFOTS 9.1680 tGradient 1.8640 tsec 11.7780 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.576816) vs oldopt=(dt=0.32,rms=0.577349) #GCMRL# 449 dt 0.448000 rms 0.577 0.329% neg 0 invalid 762 tFOTS 9.1480 tGradient 1.8620 tsec 11.7520 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.575613) vs oldopt=(dt=0.32,rms=0.57593) #GCMRL# 450 dt 0.448000 rms 0.576 0.209% neg 0 invalid 762 tFOTS 9.1540 tGradient 1.8640 tsec 11.7640 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.574411) vs oldopt=(dt=0.32,rms=0.574734) #GCMRL# 451 dt 0.448000 rms 0.574 0.209% neg 0 invalid 762 tFOTS 9.1490 tGradient 1.8760 tsec 11.7660 #GCMRL# 452 dt 0.320000 rms 0.574 0.095% neg 0 invalid 762 tFOTS 9.1180 tGradient 1.8590 tsec 11.7230 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.572984) vs oldopt=(dt=0.32,rms=0.573122) #GCMRL# 453 dt 0.384000 rms 0.573 0.153% neg 0 invalid 762 tFOTS 9.1430 tGradient 1.8520 tsec 11.7400 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.572561) vs oldopt=(dt=0.32,rms=0.572624) #GCMRL# 454 dt 0.384000 rms 0.573 0.074% neg 0 invalid 762 tFOTS 9.1240 tGradient 1.8530 tsec 11.7200 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.571947) vs oldopt=(dt=0.32,rms=0.572034) #GCMRL# 455 dt 0.384000 rms 0.572 0.107% neg 0 invalid 762 tFOTS 9.1520 tGradient 1.8500 tsec 11.7470 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.571633) vs oldopt=(dt=0.32,rms=0.571673) #GCMRL# 456 dt 0.384000 rms 0.572 0.055% neg 0 invalid 762 tFOTS 9.1250 tGradient 1.8350 tsec 11.7020 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.571144) vs oldopt=(dt=0.32,rms=0.571211) #GCMRL# 457 dt 0.384000 rms 0.571 0.086% neg 0 invalid 762 tFOTS 9.1510 tGradient 1.8560 tsec 11.7520 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.570905) vs oldopt=(dt=0.32,rms=0.570929) #GCMRL# 458 dt 0.384000 rms 0.571 0.000% neg 0 invalid 762 tFOTS 9.1580 tGradient 1.8610 tsec 11.7800 #GCMRL# 459 dt 0.192000 rms 0.571 0.040% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8620 tsec 3.2180 #GCMRL# 460 dt 0.192000 rms 0.570 0.070% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8620 tsec 2.6120 #GCMRL# 461 dt 0.192000 rms 0.570 0.017% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8730 tsec 2.9310 #GCMRL# 462 dt 0.192000 rms 0.570 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8290 tsec 2.5830 #GCMRL# 463 dt 0.192000 rms 0.570 0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8510 tsec 2.5960 #GCMRL# 464 dt 0.192000 rms 0.569 0.084% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8500 tsec 2.5990 #GCMRL# 465 dt 0.192000 rms 0.569 0.082% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8600 tsec 2.6070 #GCMRL# 466 dt 0.192000 rms 0.569 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8530 tsec 2.9080 #GCMRL# 467 dt 0.192000 rms 0.569 0.014% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8500 tsec 2.5950 #GCMRL# 468 dt 0.192000 rms 0.568 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8730 tsec 2.6200 #GCMRL# 469 dt 0.192000 rms 0.568 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8660 tsec 2.6110 #GCMRL# 470 dt 0.192000 rms 0.568 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8530 tsec 2.5970 #GCMRL# 471 dt 0.192000 rms 0.568 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8520 tsec 2.5970 #GCMRL# 472 dt 0.192000 rms 0.567 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8590 tsec 2.6080 #GCMRL# 473 dt 0.192000 rms 0.567 0.049% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8580 tsec 2.6070 #GCMRL# 474 dt 0.192000 rms 0.567 0.048% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8520 tsec 2.5970 #GCMRL# 475 dt 0.192000 rms 0.567 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8370 tsec 2.5830 #GCMRL# 476 dt 0.192000 rms 0.567 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8500 tsec 2.6000 #GCMRL# 477 dt 0.192000 rms 0.566 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8660 tsec 2.6120 #GCMRL# 478 dt 0.192000 rms 0.566 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8530 tsec 2.6050 #GCMRL# 479 dt 0.192000 rms 0.566 0.022% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8570 tsec 2.6080 #GCMRL# 480 dt 0.192000 rms 0.566 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8600 tsec 2.6260 #FOTS# QuadFit found better minimum quadopt=(dt=-0.00062779,rms=0.565987) vs oldopt=(dt=0.0003125,rms=0.565987) #GCMRL# 481 dt -0.000628 rms 0.566 0.000% neg 0 invalid 762 tFOTS 8.5400 tGradient 1.8520 tsec 11.1540 #GCMRL# 482 dt -0.000628 rms 0.566 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8590 tsec 2.6090 #GCAMreg# pass 0 level1 0 level2 1 tsec 243.365 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.566708 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.563542) vs oldopt=(dt=0.08,rms=0.564239) #GCMRL# 484 dt 0.112000 rms 0.564 0.559% neg 0 invalid 762 tFOTS 8.5170 tGradient 1.8480 tsec 11.1080 #GCMRL# 485 dt 0.320000 rms 0.558 0.998% neg 0 invalid 762 tFOTS 9.1320 tGradient 1.8430 tsec 11.7170 #GCMRL# 486 dt 0.320000 rms 0.556 0.406% neg 0 invalid 762 tFOTS 9.1310 tGradient 1.8650 tsec 11.7420 #GCMRL# 487 dt 0.320000 rms 0.555 0.182% neg 0 invalid 762 tFOTS 9.1480 tGradient 1.8620 tsec 11.7510 #GCMRL# 488 dt 0.320000 rms 0.554 0.083% neg 0 invalid 762 tFOTS 9.1420 tGradient 1.8470 tsec 11.7320 #GCMRL# 489 dt 0.320000 rms 0.554 0.000% neg 0 invalid 762 tFOTS 9.1350 tGradient 1.8480 tsec 11.7440 #GCMRL# 490 dt 0.320000 rms 0.554 0.017% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8710 tsec 2.6170 #GCMRL# 491 dt 0.320000 rms 0.554 0.020% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.8490 tsec 2.5940 GCAMregister done in 45.9754 min ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** noneg post Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.551492 #GCMRL# 493 dt 23.120000 rms 0.551 0.134% neg 0 invalid 762 tFOTS 11.5660 tGradient 4.4850 tsec 16.7980 #FOTS# QuadFit found better minimum quadopt=(dt=6.936,rms=0.550747) vs oldopt=(dt=5.78,rms=0.550747) #GCMRL# 494 dt 6.936000 rms 0.551 0.000% neg 0 invalid 762 tFOTS 11.5490 tGradient 4.4860 tsec 16.7970 #GCAMreg# pass 0 level1 5 level2 1 tsec 42.839 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.551478 #FOTS# QuadFit found better minimum quadopt=(dt=73.984,rms=0.550513) vs oldopt=(dt=92.48,rms=0.550524) #GCMRL# 496 dt 73.984000 rms 0.551 0.175% neg 0 invalid 762 tFOTS 10.9640 tGradient 4.4950 tsec 16.2040 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.550178) vs oldopt=(dt=92.48,rms=0.550243) #GCMRL# 497 dt 129.472000 rms 0.550 0.000% neg 0 invalid 762 tFOTS 10.9210 tGradient 4.5080 tsec 16.1930 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.550932 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.548902) vs oldopt=(dt=25.92,rms=0.549164) #GCMRL# 499 dt 36.288000 rms 0.549 0.368% neg 0 invalid 762 tFOTS 11.5480 tGradient 3.2800 tsec 15.5750 #FOTS# QuadFit found better minimum quadopt=(dt=86.8905,rms=0.547771) vs oldopt=(dt=103.68,rms=0.547815) iter 0, gcam->neg = 1 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 500 dt 86.890511 rms 0.548 0.000% neg 0 invalid 762 tFOTS 11.5280 tGradient 3.2830 tsec 17.7550 #GCMRL# 501 dt 86.890511 rms 0.547 0.210% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2900 tsec 4.0390 iter 0, gcam->neg = 4 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 502 dt 86.890511 rms 0.546 0.103% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2840 tsec 6.8380 iter 0, gcam->neg = 3 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 503 dt 86.890511 rms 0.546 -0.122% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2830 tsec 6.2990 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.545969) vs oldopt=(dt=25.92,rms=0.545985) #GCMRL# 504 dt 36.288000 rms 0.546 0.019% neg 0 invalid 762 tFOTS 11.5600 tGradient 3.3020 tsec 15.6080 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.54542) vs oldopt=(dt=103.68,rms=0.545514) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 505 dt 145.152000 rms 0.545 0.101% neg 0 invalid 762 tFOTS 10.9520 tGradient 3.2960 tsec 15.6280 #FOTS# QuadFit found better minimum quadopt=(dt=31.104,rms=0.545271) vs oldopt=(dt=25.92,rms=0.545278) #GCAMreg# pass 0 level1 4 level2 1 tsec 100.026 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.546006 #FOTS# QuadFit found better minimum quadopt=(dt=90.6139,rms=0.542162) vs oldopt=(dt=103.68,rms=0.542225) #GCMRL# 507 dt 90.613861 rms 0.542 0.704% neg 0 invalid 762 tFOTS 11.5680 tGradient 3.2770 tsec 15.5900 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.541248) vs oldopt=(dt=25.92,rms=0.541413) #GCMRL# 508 dt 36.288000 rms 0.541 0.000% neg 0 invalid 762 tFOTS 10.9470 tGradient 3.2790 tsec 14.9880 #GCMRL# 509 dt 36.288000 rms 0.541 0.081% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2960 tsec 4.0380 #GCMRL# 510 dt 36.288000 rms 0.540 0.104% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2750 tsec 4.0160 #GCMRL# 511 dt 36.288000 rms 0.540 0.104% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2780 tsec 4.0200 #GCMRL# 512 dt 36.288000 rms 0.539 0.081% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2780 tsec 4.0400 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.539071) vs oldopt=(dt=25.92,rms=0.539107) setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.540125 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.534717) vs oldopt=(dt=32,rms=0.534864) iter 0, gcam->neg = 7 after 8 iterations, nbhd size=0, neg = 0 #GCMRL# 514 dt 38.400000 rms 0.535 0.994% neg 0 invalid 762 tFOTS 11.5840 tGradient 2.7390 tsec 18.2750 #FOTS# QuadFit found better minimum quadopt=(dt=69.8626,rms=0.530379) vs oldopt=(dt=32,rms=0.531474) iter 0, gcam->neg = 10 after 9 iterations, nbhd size=0, neg = 0 #GCMRL# 515 dt 69.862595 rms 0.530 0.815% neg 0 invalid 762 tFOTS 11.5540 tGradient 2.7440 tsec 18.4740 #FOTS# QuadFit found better minimum quadopt=(dt=19.2,rms=0.528607) vs oldopt=(dt=32,rms=0.529317) iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 #GCMRL# 516 dt 19.200000 rms 0.529 0.327% neg 0 invalid 762 tFOTS 11.5670 tGradient 2.7560 tsec 17.5650 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.527849) vs oldopt=(dt=32,rms=0.527893) iter 0, gcam->neg = 7 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 517 dt 25.600000 rms 0.528 0.000% neg 0 invalid 762 tFOTS 11.5840 tGradient 2.7530 tsec 18.8390 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 518 dt 25.600000 rms 0.527 0.185% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7310 tsec 4.1020 iter 0, gcam->neg = 6 after 13 iterations, nbhd size=1, neg = 0 #GCMRL# 519 dt 25.600000 rms 0.525 0.282% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7400 tsec 8.2770 iter 0, gcam->neg = 3 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 520 dt 25.600000 rms 0.524 0.205% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7490 tsec 4.1240 iter 0, gcam->neg = 4 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 521 dt 25.600000 rms 0.523 0.307% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7590 tsec 4.4860 iter 0, gcam->neg = 9 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 522 dt 25.600000 rms 0.522 0.125% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7460 tsec 7.8500 iter 0, gcam->neg = 17 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 523 dt 25.600000 rms 0.521 0.188% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7340 tsec 7.2200 iter 0, gcam->neg = 23 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 524 dt 25.600000 rms 0.521 0.011% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7410 tsec 7.8440 iter 0, gcam->neg = 13 after 16 iterations, nbhd size=1, neg = 0 #GCMRL# 525 dt 25.600000 rms 0.520 0.169% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7770 tsec 9.1300 iter 0, gcam->neg = 37 after 19 iterations, nbhd size=1, neg = 0 #GCMRL# 526 dt 25.600000 rms 0.520 0.132% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7740 tsec 10.0720 iter 0, gcam->neg = 24 after 17 iterations, nbhd size=1, neg = 0 #GCMRL# 527 dt 25.600000 rms 0.519 0.087% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7650 tsec 9.4350 iter 0, gcam->neg = 48 after 18 iterations, nbhd size=1, neg = 0 #GCMRL# 528 dt 25.600000 rms 0.519 0.102% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7680 tsec 9.7520 iter 0, gcam->neg = 49 after 20 iterations, nbhd size=1, neg = 0 #GCMRL# 529 dt 25.600000 rms 0.518 0.091% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7780 tsec 10.4010 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.517748) vs oldopt=(dt=8,rms=0.517791) iter 0, gcam->neg = 3 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 530 dt 11.200000 rms 0.518 0.000% neg 0 invalid 762 tFOTS 11.5430 tGradient 2.7940 tsec 16.0440 iter 0, gcam->neg = 3 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 531 dt 11.200000 rms 0.518 0.020% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7520 tsec 4.7490 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 532 dt 11.200000 rms 0.517 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7670 tsec 5.6880 iter 0, gcam->neg = 7 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 533 dt 11.200000 rms 0.517 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7710 tsec 5.0890 iter 0, gcam->neg = 5 after 9 iterations, nbhd size=0, neg = 0 #GCMRL# 534 dt 11.200000 rms 0.517 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7710 tsec 6.9360 iter 0, gcam->neg = 5 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 535 dt 11.200000 rms 0.517 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7510 tsec 6.2950 iter 0, gcam->neg = 8 after 10 iterations, nbhd size=0, neg = 0 #GCAMreg# pass 0 level1 3 level2 1 tsec 221.231 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.517367 #FOTS# QuadFit found better minimum quadopt=(dt=52.4075,rms=0.511598) vs oldopt=(dt=32,rms=0.512207) iter 0, gcam->neg = 5 after 11 iterations, nbhd size=1, neg = 0 #GCMRL# 537 dt 52.407547 rms 0.512 1.110% neg 0 invalid 762 tFOTS 11.5490 tGradient 2.7530 tsec 19.0770 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.509177) vs oldopt=(dt=32,rms=0.509228) #GCMRL# 538 dt 38.400000 rms 0.509 0.478% neg 0 invalid 762 tFOTS 11.5400 tGradient 2.7450 tsec 15.0270 #FOTS# QuadFit found better minimum quadopt=(dt=19.9111,rms=0.508168) vs oldopt=(dt=32,rms=0.508488) iter 0, gcam->neg = 2 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 539 dt 19.911111 rms 0.508 0.000% neg 0 invalid 762 tFOTS 11.5870 tGradient 2.7490 tsec 17.2870 iter 0, gcam->neg = 1 after 7 iterations, nbhd size=1, neg = 0 #GCMRL# 540 dt 19.911111 rms 0.507 0.152% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7330 tsec 6.2840 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 541 dt 19.911111 rms 0.506 0.210% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7260 tsec 4.0960 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 #GCMRL# 542 dt 19.911111 rms 0.505 0.204% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7430 tsec 6.3640 iter 0, gcam->neg = 5 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 543 dt 19.911111 rms 0.504 0.178% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7840 tsec 6.3270 iter 0, gcam->neg = 6 after 15 iterations, nbhd size=1, neg = 0 #GCMRL# 544 dt 19.911111 rms 0.504 0.124% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7560 tsec 8.7880 iter 0, gcam->neg = 5 after 15 iterations, nbhd size=1, neg = 0 #GCMRL# 545 dt 19.911111 rms 0.503 0.134% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7390 tsec 8.7770 iter 0, gcam->neg = 10 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 546 dt 19.911111 rms 0.503 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7310 tsec 5.9710 iter 0, gcam->neg = 7 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 547 dt 19.911111 rms 0.503 0.022% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7770 tsec 5.7090 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.502371) vs oldopt=(dt=32,rms=0.502419) #GCMRL# 548 dt 25.600000 rms 0.502 0.093% neg 0 invalid 762 tFOTS 11.5790 tGradient 2.7240 tsec 15.0490 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.502063) vs oldopt=(dt=8,rms=0.502123) #GCMRL# 549 dt 11.200000 rms 0.502 0.000% neg 0 invalid 762 tFOTS 11.5460 tGradient 2.7370 tsec 15.0450 #GCMRL# 550 dt 11.200000 rms 0.502 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7470 tsec 3.4960 #GCMRL# 551 dt 11.200000 rms 0.502 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7550 tsec 3.5010 #GCMRL# 552 dt 11.200000 rms 0.501 0.064% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7330 tsec 3.4760 #GCMRL# 553 dt 11.200000 rms 0.501 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7370 tsec 3.4860 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 554 dt 11.200000 rms 0.501 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.7330 tsec 4.4200 iter 0, gcam->neg = 7 after 5 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.506848 #FOTS# QuadFit found better minimum quadopt=(dt=0.000135,rms=0.50611) vs oldopt=(dt=0.0001125,rms=0.50611) #GCMRL# 556 dt 0.000135 rms 0.506 0.146% neg 0 invalid 762 tFOTS 14.6430 tGradient 2.4720 tsec 17.8610 #GCAMreg# pass 0 level1 2 level2 1 tsec 36.077 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.506848 #GCMRL# 558 dt 0.000000 rms 0.506 0.146% neg 0 invalid 762 tFOTS 11.0020 tGradient 2.4570 tsec 14.2070 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.519019 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.517897) vs oldopt=(dt=0.32,rms=0.517958) #GCMRL# 560 dt 0.448000 rms 0.518 0.216% neg 0 invalid 762 tFOTS 11.6090 tGradient 2.3070 tsec 14.6620 #FOTS# QuadFit found better minimum quadopt=(dt=0.256,rms=0.517823) vs oldopt=(dt=0.32,rms=0.51783) #GCMRL# 561 dt 0.256000 rms 0.518 0.000% neg 0 invalid 762 tFOTS 11.6150 tGradient 2.2990 tsec 14.6720 #GCAMreg# pass 0 level1 1 level2 1 tsec 36.385 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.518562 #FOTS# QuadFit found better minimum quadopt=(dt=1.024,rms=0.516632) vs oldopt=(dt=1.28,rms=0.51666) #GCMRL# 563 dt 1.024000 rms 0.517 0.372% neg 0 invalid 762 tFOTS 11.6100 tGradient 2.3070 tsec 14.6620 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.516463) vs oldopt=(dt=0.32,rms=0.516487) #GCMRL# 564 dt 0.448000 rms 0.516 0.000% neg 0 invalid 762 tFOTS 11.5880 tGradient 2.2970 tsec 14.6430 #GCMRL# 565 dt 0.448000 rms 0.516 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.2790 tsec 3.0220 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.505341 #FOTS# QuadFit found better minimum quadopt=(dt=2.22124,rms=0.452738) vs oldopt=(dt=1.28,rms=0.462166) iter 0, gcam->neg = 2171 after 18 iterations, nbhd size=1, neg = 0 #GCMRL# 567 dt 2.221236 rms 0.463 8.348% neg 0 invalid 762 tFOTS 11.6000 tGradient 1.8450 tsec 20.5130 #FOTS# QuadFit found better minimum quadopt=(dt=0.096,rms=0.462773) vs oldopt=(dt=0.08,rms=0.462776) #GCMRL# 568 dt 0.096000 rms 0.463 0.000% neg 0 invalid 762 tFOTS 11.6130 tGradient 1.8890 tsec 14.2650 #GCAMreg# pass 0 level1 0 level2 1 tsec 41.348 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.463698 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.462303) vs oldopt=(dt=0.08,rms=0.462338) #GCMRL# 570 dt 0.112000 rms 0.462 0.301% neg 0 invalid 762 tFOTS 11.6110 tGradient 1.8370 tsec 14.1940 #FOTS# QuadFit found better minimum quadopt=(dt=0.012,rms=0.46228) vs oldopt=(dt=0.02,rms=0.462282) #GCMRL# 571 dt 0.012000 rms 0.462 0.000% neg 0 invalid 762 tFOTS 11.6380 tGradient 1.8340 tsec 14.2310 label assignment complete, 0 changed (0.00%) GCAMregister done in 14.1288 min Starting GCAMcomputeMaxPriorLabels() Morphing with label term set to 0 ******************************* Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.447578 #FOTS# QuadFit found better minimum quadopt=(dt=18.496,rms=0.447544) vs oldopt=(dt=23.12,rms=0.447546) #GCMRL# 573 dt 18.496000 rms 0.448 0.007% neg 0 invalid 762 tFOTS 11.3380 tGradient 4.1710 tsec 16.2440 #FOTS# QuadFit found better minimum quadopt=(dt=2.023,rms=0.447544) vs oldopt=(dt=1.445,rms=0.447544) #GCMRL# 574 dt 2.023000 rms 0.448 0.000% neg 0 invalid 762 tFOTS 11.3400 tGradient 4.1540 tsec 16.2440 #GCAMreg# pass 0 level1 5 level2 1 tsec 41.344 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.447544 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.44742) vs oldopt=(dt=92.48,rms=0.447423) #GCMRL# 576 dt 110.976000 rms 0.447 0.028% neg 0 invalid 762 tFOTS 10.7420 tGradient 4.1510 tsec 15.6270 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.447346) vs oldopt=(dt=92.48,rms=0.447357) #GCMRL# 577 dt 129.472000 rms 0.447 0.000% neg 0 invalid 762 tFOTS 10.7390 tGradient 4.1850 tsec 15.6710 #GCMRL# 578 dt 129.472000 rms 0.447 0.005% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1490 tsec 4.8820 #GCMRL# 579 dt 129.472000 rms 0.447 0.011% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1500 tsec 4.8800 #GCMRL# 580 dt 129.472000 rms 0.447 0.008% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1590 tsec 4.8890 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.447418 #FOTS# QuadFit found better minimum quadopt=(dt=4.88889,rms=0.447408) vs oldopt=(dt=6.48,rms=0.447409) #GCMRL# 582 dt 4.888889 rms 0.447 0.002% neg 0 invalid 762 tFOTS 11.3190 tGradient 2.9370 tsec 14.9850 #FOTS# QuadFit found better minimum quadopt=(dt=0.486,rms=0.447407) vs oldopt=(dt=0.405,rms=0.447407) #GCMRL# 583 dt 0.486000 rms 0.447 0.000% neg 0 invalid 762 tFOTS 11.3470 tGradient 2.9530 tsec 15.0470 #GCAMreg# pass 0 level1 4 level2 1 tsec 37.676 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.447407 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.446953) vs oldopt=(dt=103.68,rms=0.446977) #GCMRL# 585 dt 145.152000 rms 0.447 0.101% neg 0 invalid 762 tFOTS 10.7350 tGradient 2.9430 tsec 14.4070 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.446748) vs oldopt=(dt=25.92,rms=0.446788) #GCMRL# 586 dt 36.288000 rms 0.447 0.000% neg 0 invalid 762 tFOTS 11.3220 tGradient 2.9440 tsec 15.0160 #GCMRL# 587 dt 36.288000 rms 0.447 0.017% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.9480 tsec 3.6850 #GCMRL# 588 dt 36.288000 rms 0.447 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.9450 tsec 3.6800 #GCMRL# 589 dt 36.288000 rms 0.446 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.9400 tsec 3.6750 #GCMRL# 590 dt 36.288000 rms 0.446 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.9510 tsec 3.6810 setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.446921 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.446602) vs oldopt=(dt=8,rms=0.446628) #GCMRL# 592 dt 11.200000 rms 0.447 0.071% neg 0 invalid 762 tFOTS 11.3300 tGradient 2.3960 tsec 14.4600 #FOTS# QuadFit found better minimum quadopt=(dt=2.8,rms=0.446577) vs oldopt=(dt=2,rms=0.446582) #GCMRL# 593 dt 2.800000 rms 0.447 0.000% neg 0 invalid 762 tFOTS 11.3270 tGradient 2.3910 tsec 14.4690 #GCMRL# 594 dt 2.800000 rms 0.447 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3920 tsec 3.1240 #GCAMreg# pass 0 level1 3 level2 1 tsec 39.153 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.446565 #FOTS# QuadFit found better minimum quadopt=(dt=63.3263,rms=0.444195) vs oldopt=(dt=32,rms=0.444545) iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 596 dt 63.326316 rms 0.444 0.531% neg 0 invalid 762 tFOTS 11.3480 tGradient 2.4020 tsec 15.4310 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.442781) vs oldopt=(dt=32,rms=0.442862) #GCMRL# 597 dt 25.600000 rms 0.443 0.318% neg 0 invalid 762 tFOTS 11.3250 tGradient 2.4040 tsec 14.4640 #FOTS# QuadFit found better minimum quadopt=(dt=38.4,rms=0.44223) vs oldopt=(dt=32,rms=0.442252) #GCMRL# 598 dt 38.400000 rms 0.442 0.000% neg 0 invalid 762 tFOTS 11.3190 tGradient 2.3990 tsec 14.4660 #GCMRL# 599 dt 38.400000 rms 0.442 0.138% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3900 tsec 3.1210 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 #GCMRL# 600 dt 38.400000 rms 0.441 0.232% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4030 tsec 5.6350 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 #GCMRL# 601 dt 38.400000 rms 0.440 0.172% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4040 tsec 5.9310 iter 0, gcam->neg = 3 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 602 dt 38.400000 rms 0.438 0.305% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3910 tsec 6.8670 iter 0, gcam->neg = 4 after 11 iterations, nbhd size=1, neg = 0 #GCMRL# 603 dt 38.400000 rms 0.438 0.183% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3950 tsec 7.1860 iter 0, gcam->neg = 4 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 604 dt 38.400000 rms 0.437 0.152% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3910 tsec 5.6150 iter 0, gcam->neg = 15 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 605 dt 38.400000 rms 0.436 0.165% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3920 tsec 7.5000 iter 0, gcam->neg = 38 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 606 dt 38.400000 rms 0.436 0.115% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.4020 tsec 5.3260 iter 0, gcam->neg = 25 after 5 iterations, nbhd size=0, neg = 0 #GCMRL# 607 dt 38.400000 rms 0.435 0.072% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3910 tsec 5.3330 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.435118) vs oldopt=(dt=32,rms=0.435163) iter 0, gcam->neg = 2 after 15 iterations, nbhd size=2, neg = 0 setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.439647 #FOTS# QuadFit found better minimum quadopt=(dt=3.125,rms=0.439354) vs oldopt=(dt=2.88,rms=0.439357) #GCMRL# 609 dt 3.125000 rms 0.439 0.067% neg 0 invalid 762 tFOTS 11.3640 tGradient 2.1210 tsec 14.2170 #FOTS# QuadFit found better minimum quadopt=(dt=0.864,rms=0.439343) vs oldopt=(dt=0.72,rms=0.439344) iter 0, gcam->neg = 1 after 14 iterations, nbhd size=2, neg = 0 #GCAMreg# pass 0 level1 2 level2 1 tsec 37.434 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.439354 #FOTS# QuadFit found better minimum quadopt=(dt=8.88889,rms=0.438448) vs oldopt=(dt=11.52,rms=0.438539) iter 0, gcam->neg = 4 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 611 dt 8.888889 rms 0.439 0.192% neg 0 invalid 762 tFOTS 11.3760 tGradient 2.1310 tsec 18.6220 #FOTS# QuadFit found better minimum quadopt=(dt=8.88889,rms=0.438161) vs oldopt=(dt=11.52,rms=0.438189) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 612 dt 8.888889 rms 0.438 0.000% neg 0 invalid 762 tFOTS 11.3590 tGradient 2.1200 tsec 14.8570 iter 0, gcam->neg = 3 after 8 iterations, nbhd size=1, neg = 0 #GCMRL# 613 dt 8.888889 rms 0.438 0.142% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1300 tsec 6.0300 iter 0, gcam->neg = 13 after 18 iterations, nbhd size=1, neg = 0 #GCMRL# 614 dt 8.888889 rms 0.437 0.108% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1200 tsec 9.0850 iter 0, gcam->neg = 48 after 24 iterations, nbhd size=1, neg = 0 #GCMRL# 615 dt 8.888889 rms 0.436 0.132% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1330 tsec 10.9790 iter 0, gcam->neg = 56 after 14 iterations, nbhd size=1, neg = 0 #GCMRL# 616 dt 8.888889 rms 0.436 0.185% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1320 tsec 7.8380 iter 0, gcam->neg = 89 after 25 iterations, nbhd size=1, neg = 0 #GCMRL# 617 dt 8.888889 rms 0.435 0.244% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1180 tsec 11.3010 iter 0, gcam->neg = 110 after 19 iterations, nbhd size=1, neg = 0 #GCMRL# 618 dt 8.888889 rms 0.433 0.287% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1310 tsec 9.4120 iter 0, gcam->neg = 142 after 19 iterations, nbhd size=1, neg = 0 #GCMRL# 619 dt 8.888889 rms 0.432 0.223% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1210 tsec 9.4360 iter 0, gcam->neg = 153 after 19 iterations, nbhd size=1, neg = 0 #GCMRL# 620 dt 8.888889 rms 0.432 0.125% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1210 tsec 9.4030 iter 0, gcam->neg = 166 after 28 iterations, nbhd size=1, neg = 0 #GCMRL# 621 dt 8.888889 rms 0.432 -0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.1340 tsec 12.9490 #FOTS# QuadFit found better minimum quadopt=(dt=3.456,rms=0.431833) vs oldopt=(dt=2.88,rms=0.431833) iter 0, gcam->neg = 6 after 13 iterations, nbhd size=1, neg = 0 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.438524 #GCAMreg# pass 0 level1 1 level2 1 tsec 17.452 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.438524 #FOTS# QuadFit found better minimum quadopt=(dt=4e-05,rms=0.438524) vs oldopt=(dt=5e-05,rms=0.438524) #GCMRL# 624 dt 0.000040 rms 0.439 0.000% neg 0 invalid 762 tFOTS 14.3470 tGradient 1.9470 tsec 17.0240 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.427364 #FOTS# QuadFit found better minimum quadopt=(dt=1.17518,rms=0.411403) vs oldopt=(dt=1.28,rms=0.411502) iter 0, gcam->neg = 1384 after 21 iterations, nbhd size=1, neg = 0 #GCMRL# 626 dt 1.175176 rms 0.416 2.659% neg 0 invalid 762 tFOTS 11.3940 tGradient 1.5200 tsec 20.9270 #GCMRL# 627 dt 0.000013 rms 0.416 0.000% neg 0 invalid 762 tFOTS 14.3700 tGradient 1.5190 tsec 16.6380 #GCAMreg# pass 0 level1 0 level2 1 tsec 43.766 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.415999 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.415548) vs oldopt=(dt=0.08,rms=0.415605) #GCMRL# 629 dt 0.112000 rms 0.416 0.108% neg 0 invalid 762 tFOTS 11.3870 tGradient 1.5150 tsec 13.6350 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.415321) vs oldopt=(dt=0.08,rms=0.415347) #GCMRL# 630 dt 0.112000 rms 0.415 0.000% neg 0 invalid 762 tFOTS 11.3850 tGradient 1.5140 tsec 13.6450 #GCMRL# 631 dt 0.112000 rms 0.415 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5160 tsec 2.2550 #GCMRL# 632 dt 0.112000 rms 0.415 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 1.5180 tsec 2.2550 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 GCAMregister done in 10.8861 min writing output transformation to transforms/talairach.m3z... GCAMwrite Calls to gcamLogLikelihoodEnergy 4411 tmin = 10.4242 Calls to gcamLabelEnergy 3804 tmin = 0.7609 Calls to gcamJacobianEnergy 4411 tmin = 9.16882 Calls to gcamSmoothnessEnergy 4411 tmin = 10.5617 Calls to gcamLogLikelihoodTerm 634 tmin = 3.33945 Calls to gcamLabelTerm 573 tmin = 4.05612 Calls to gcamJacobianTerm 634 tmin = 7.99158 Calls to gcamSmoothnessTerm 634 tmin = 2.7266 Calls to gcamComputeGradient 634 tmin = 35.4297 Calls to gcamComputeMetricProperties 6799 tmin = 13.1112 mri_ca_register took 1 hours, 29 minutes and 46 seconds. #VMPC# mri_ca_register VmPeak 2022844 FSRUNTIME@ mri_ca_register 1.4961 hours 1 threads @#@FSTIME 2023:09:02:17:56:00 mri_ca_register N 9 e 5386.09 S 1.87 U 5383.92 P 99% M 1326968 F 13 R 1469041 W 0 c 39552 w 9 I 1960 O 63600 L 1.03 1.03 1.00 @#@FSLOADPOST 2023:09:02:19:25:46 mri_ca_register N 9 1.00 1.00 1.00 #-------------------------------------- #@# SubCort Seg Sat Sep 2 19:25:46 EDT 2023 mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca aseg.auto_noCCseg.mgz sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca aseg.auto_noCCseg.mgz relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 == Number of threads available to for OpenMP = 1 == reading 1 input volumes reading classifier array from /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca reading input volume from norm.mgz average std[0] = 7.2 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 5.49 Atlas used for the 3D morph was /home/aiisc/Downloads/freesurfer/average/RB_all_2020-01-02.gca average std = 7.2 using min determinant for regularization = 5.2 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15521 (20) mri peak = 0.25645 ( 6) Left_Lateral_Ventricle (4): linear fit = 0.25 x + 0.0 (7989 voxels, overlap=0.005) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (7989 voxels, peak = 5), gca=8.0 gca peak = 0.20380 (13) mri peak = 0.24754 ( 6) Right_Lateral_Ventricle (43): linear fit = 0.38 x + 0.0 (8529 voxels, overlap=0.005) Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (8529 voxels, peak = 5), gca=5.2 gca peak = 0.26283 (96) mri peak = 0.07904 (97) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (291 voxels, overlap=1.010) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (291 voxels, peak = 96), gca=95.5 gca peak = 0.15814 (97) mri peak = 0.15412 (95) Left_Pallidum (13): linear fit = 1.02 x + 0.0 (278 voxels, overlap=0.955) Left_Pallidum (13): linear fit = 1.02 x + 0.0 (278 voxels, peak = 99), gca=99.4 gca peak = 0.27624 (56) mri peak = 0.11411 (60) Right_Hippocampus (53): linear fit = 0.99 x + 0.0 (350 voxels, overlap=1.008) Right_Hippocampus (53): linear fit = 0.99 x + 0.0 (350 voxels, peak = 55), gca=55.2 gca peak = 0.28723 (59) mri peak = 0.09586 (54) Left_Hippocampus (17): linear fit = 0.94 x + 0.0 (403 voxels, overlap=1.011) Left_Hippocampus (17): linear fit = 0.94 x + 0.0 (403 voxels, peak = 56), gca=55.8 gca peak = 0.07623 (103) mri peak = 0.10468 (103) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (27954 voxels, overlap=0.665) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (27954 voxels, peak = 104), gca=103.5 gca peak = 0.07837 (105) mri peak = 0.10051 (103) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (26351 voxels, overlap=0.666) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (26351 voxels, peak = 105), gca=105.0 gca peak = 0.10165 (58) mri peak = 0.05891 (57) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (7007 voxels, overlap=0.983) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (7007 voxels, peak = 57), gca=57.1 gca peak = 0.11113 (58) mri peak = 0.05601 (62) Right_Cerebral_Cortex (42): linear fit = 1.04 x + 0.0 (7321 voxels, overlap=0.946) Right_Cerebral_Cortex (42): linear fit = 1.04 x + 0.0 (7321 voxels, peak = 61), gca=60.6 gca peak = 0.27796 (67) mri peak = 0.11853 (74) Right_Caudate (50): linear fit = 1.10 x + 0.0 (738 voxels, overlap=0.702) Right_Caudate (50): linear fit = 1.10 x + 0.0 (738 voxels, peak = 73), gca=73.4 gca peak = 0.14473 (69) mri peak = 0.09902 (74) Left_Caudate (11): linear fit = 0.99 x + 0.0 (665 voxels, overlap=1.002) Left_Caudate (11): linear fit = 0.99 x + 0.0 (665 voxels, peak = 68), gca=68.0 gca peak = 0.14301 (56) mri peak = 0.06332 (61) Left_Cerebellum_Cortex (8): linear fit = 1.07 x + 0.0 (5515 voxels, overlap=0.922) Left_Cerebellum_Cortex (8): linear fit = 1.07 x + 0.0 (5515 voxels, peak = 60), gca=59.6 gca peak = 0.14610 (55) mri peak = 0.06534 (61) Right_Cerebellum_Cortex (47): linear fit = 1.09 x + 0.0 (4882 voxels, overlap=0.746) Right_Cerebellum_Cortex (47): linear fit = 1.09 x + 0.0 (4882 voxels, peak = 60), gca=59.7 gca peak = 0.16309 (85) mri peak = 0.09058 (91) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (3566 voxels, overlap=0.562) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (3566 voxels, peak = 91), gca=90.5 gca peak = 0.15172 (84) mri peak = 0.09431 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (3604 voxels, overlap=0.589) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (3604 voxels, peak = 89), gca=89.5 gca peak = 0.30461 (58) mri peak = 0.09927 (63) Left_Amygdala (18): linear fit = 1.04 x + 0.0 (271 voxels, overlap=1.028) Left_Amygdala (18): linear fit = 1.04 x + 0.0 (271 voxels, peak = 61), gca=60.6 gca peak = 0.32293 (57) mri peak = 0.07988 (62) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (333 voxels, overlap=1.025) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (333 voxels, peak = 60), gca=59.6 gca peak = 0.11083 (90) mri peak = 0.07931 (84) Left_Thalamus (10): linear fit = 0.95 x + 0.0 (2409 voxels, overlap=0.821) Left_Thalamus (10): linear fit = 0.95 x + 0.0 (2409 voxels, peak = 86), gca=85.9 gca peak = 0.11393 (83) mri peak = 0.08570 (84) Right_Thalamus (49): linear fit = 1.00 x + 0.0 (2424 voxels, overlap=0.975) Right_Thalamus (49): linear fit = 1.00 x + 0.0 (2424 voxels, peak = 83), gca=82.6 gca peak = 0.08575 (81) mri peak = 0.06825 (77) Left_Putamen (12): linear fit = 0.99 x + 0.0 (817 voxels, overlap=0.933) Left_Putamen (12): linear fit = 0.99 x + 0.0 (817 voxels, peak = 80), gca=79.8 gca peak = 0.08618 (78) mri peak = 0.06879 (75) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1003 voxels, overlap=0.949) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1003 voxels, peak = 78), gca=78.0 gca peak = 0.08005 (78) mri peak = 0.07820 (87) Brain_Stem (16): linear fit = 1.11 x + 0.0 (7787 voxels, overlap=0.492) Brain_Stem (16): linear fit = 1.11 x + 0.0 (7787 voxels, peak = 86), gca=86.2 gca peak = 0.12854 (88) mri peak = 0.06160 (92) Right_VentralDC (60): linear fit = 1.11 x + 0.0 (804 voxels, overlap=0.686) Right_VentralDC (60): linear fit = 1.11 x + 0.0 (804 voxels, peak = 97), gca=97.2 gca peak = 0.15703 (87) mri peak = 0.08194 (92) Left_VentralDC (28): linear fit = 1.08 x + 0.0 (710 voxels, overlap=0.819) Left_VentralDC (28): linear fit = 1.08 x + 0.0 (710 voxels, peak = 94), gca=93.5 gca peak = 0.17522 (25) mri peak = 0.24221 ( 6) Third_Ventricle (14): linear fit = 0.22 x + 0.0 (288 voxels, overlap=0.045) Third_Ventricle (14): linear fit = 0.22 x + 0.0 (288 voxels, peak = 5), gca=5.4 gca peak = 0.17113 (14) mri peak = 0.21818 ( 6) Fourth_Ventricle (15): linear fit = 0.31 x + 0.0 (110 voxels, overlap=0.568) Fourth_Ventricle (15): linear fit = 0.31 x + 0.0 (110 voxels, peak = 4), gca=4.3 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.16627 (28) gca peak Third_Ventricle = 0.17522 (25) gca peak Fourth_Ventricle = 0.17113 (14) gca peak CSF = 0.20346 (36) gca peak Left_Accumbens_area = 0.70646 (62) gca peak Left_undetermined = 1.00000 (28) gca peak Left_vessel = 0.89917 (53) gca peak Left_choroid_plexus = 0.11689 (35) gca peak Right_Inf_Lat_Vent = 0.25504 (23) gca peak Right_Accumbens_area = 0.31650 (65) gca peak Right_vessel = 0.77268 (52) gca peak Right_choroid_plexus = 0.13275 (38) gca peak Fifth_Ventricle = 0.60973 (33) gca peak WM_hypointensities = 0.11013 (77) gca peak non_WM_hypointensities = 0.11354 (41) gca peak Optic_Chiasm = 0.51646 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.01 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.40 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.31706 ( 7) mri peak = 0.25645 ( 6) Left_Lateral_Ventricle (4): linear fit = 0.64 x + 0.0 (7989 voxels, overlap=0.853) Left_Lateral_Ventricle (4): linear fit = 0.64 x + 0.0 (7989 voxels, peak = 5), gca=4.5 gca peak = 0.29334 ( 5) mri peak = 0.24754 ( 6) Right_Lateral_Ventricle (43): linear fit = 0.93 x + 0.0 (8529 voxels, overlap=0.862) Right_Lateral_Ventricle (43): linear fit = 0.93 x + 0.0 (8529 voxels, peak = 5), gca=4.6 gca peak = 0.22052 (94) mri peak = 0.07904 (97) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (291 voxels, overlap=1.006) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (291 voxels, peak = 94), gca=93.5 gca peak = 0.14912 (99) mri peak = 0.15412 (95) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (278 voxels, overlap=1.001) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (278 voxels, peak = 99), gca=99.0 gca peak = 0.29364 (55) mri peak = 0.11411 (60) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (350 voxels, overlap=1.008) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (350 voxels, peak = 55), gca=55.0 gca peak = 0.28758 (56) mri peak = 0.09586 (54) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (403 voxels, overlap=1.011) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (403 voxels, peak = 56), gca=56.0 gca peak = 0.07891 (104) mri peak = 0.10468 (103) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (27954 voxels, overlap=0.689) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (27954 voxels, peak = 104), gca=104.0 gca peak = 0.07837 (105) mri peak = 0.10051 (103) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (26351 voxels, overlap=0.666) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (26351 voxels, peak = 105), gca=105.0 gca peak = 0.10220 (57) mri peak = 0.05891 (57) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (7007 voxels, overlap=0.981) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (7007 voxels, peak = 58), gca=58.4 gca peak = 0.10911 (61) mri peak = 0.05601 (62) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (7321 voxels, overlap=0.960) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (7321 voxels, peak = 61), gca=61.0 gca peak = 0.22760 (73) mri peak = 0.11853 (74) Right_Caudate (50): linear fit = 0.99 x + 0.0 (738 voxels, overlap=1.003) Right_Caudate (50): linear fit = 0.99 x + 0.0 (738 voxels, peak = 72), gca=71.9 gca peak = 0.16539 (68) mri peak = 0.09902 (74) Left_Caudate (11): linear fit = 1.00 x + 0.0 (665 voxels, overlap=1.000) Left_Caudate (11): linear fit = 1.00 x + 0.0 (665 voxels, peak = 68), gca=68.0 gca peak = 0.13190 (59) mri peak = 0.06332 (61) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (5515 voxels, overlap=0.996) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (5515 voxels, peak = 60), gca=60.5 gca peak = 0.14578 (60) mri peak = 0.06534 (61) Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (4882 voxels, overlap=0.978) Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (4882 voxels, peak = 62), gca=61.5 gca peak = 0.15248 (90) mri peak = 0.09058 (91) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (3566 voxels, overlap=0.916) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (3566 voxels, peak = 92), gca=92.2 gca peak = 0.16847 (90) mri peak = 0.09431 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (3604 voxels, overlap=0.916) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (3604 voxels, peak = 92), gca=92.2 gca peak = 0.32239 (61) mri peak = 0.09927 (63) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (271 voxels, overlap=1.020) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (271 voxels, peak = 62), gca=61.9 gca peak = 0.32344 (60) mri peak = 0.07988 (62) Right_Amygdala (54): linear fit = 1.02 x + 0.0 (333 voxels, overlap=1.022) Right_Amygdala (54): linear fit = 1.02 x + 0.0 (333 voxels, peak = 62), gca=61.5 gca peak = 0.11518 (86) mri peak = 0.07931 (84) Left_Thalamus (10): linear fit = 1.00 x + 0.0 (2409 voxels, overlap=0.961) Left_Thalamus (10): linear fit = 1.00 x + 0.0 (2409 voxels, peak = 86), gca=85.6 gca peak = 0.09537 (80) mri peak = 0.08570 (84) Right_Thalamus (49): linear fit = 1.00 x + 0.0 (2424 voxels, overlap=0.965) Right_Thalamus (49): linear fit = 1.00 x + 0.0 (2424 voxels, peak = 80), gca=79.6 gca peak = 0.08348 (80) mri peak = 0.06825 (77) Left_Putamen (12): linear fit = 1.00 x + 0.0 (817 voxels, overlap=0.927) Left_Putamen (12): linear fit = 1.00 x + 0.0 (817 voxels, peak = 80), gca=80.0 gca peak = 0.08618 (78) mri peak = 0.06879 (75) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1003 voxels, overlap=0.948) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1003 voxels, peak = 78), gca=78.0 gca peak = 0.07904 (90) mri peak = 0.07820 (87) Brain_Stem (16): linear fit = 1.00 x + 0.0 (7787 voxels, overlap=0.804) Brain_Stem (16): linear fit = 1.00 x + 0.0 (7787 voxels, peak = 90), gca=89.6 gca peak = 0.11046 (97) mri peak = 0.06160 (92) Right_VentralDC (60): linear fit = 1.01 x + 0.0 (804 voxels, overlap=0.864) Right_VentralDC (60): linear fit = 1.01 x + 0.0 (804 voxels, peak = 98), gca=98.5 gca peak = 0.14152 (92) mri peak = 0.08194 (92) Left_VentralDC (28): linear fit = 0.99 x + 0.0 (710 voxels, overlap=0.946) Left_VentralDC (28): linear fit = 0.99 x + 0.0 (710 voxels, peak = 91), gca=90.6 gca peak = 0.32031 (10) mri peak = 0.24221 ( 6) Third_Ventricle (14): linear fit = 0.52 x + 0.0 (288 voxels, overlap=1.005) Third_Ventricle (14): linear fit = 0.52 x + 0.0 (288 voxels, peak = 5), gca=5.2 gca peak = 0.46125 ( 6) mri peak = 0.21818 ( 6) Fourth_Ventricle (15): linear fit = 0.77 x + 0.0 (110 voxels, overlap=0.952) Fourth_Ventricle (15): linear fit = 0.77 x + 0.0 (110 voxels, peak = 5), gca=4.6 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.21033 (26) gca peak Third_Ventricle = 0.32031 (10) gca peak CSF = 0.27810 (15) gca peak Left_Accumbens_area = 0.65417 (61) gca peak Left_undetermined = 1.00000 (28) gca peak Left_vessel = 0.89917 (53) gca peak Left_choroid_plexus = 0.11689 (35) gca peak Right_Inf_Lat_Vent = 0.25910 (23) gca peak Right_Accumbens_area = 0.29155 (71) gca peak Right_vessel = 0.77268 (52) gca peak Right_choroid_plexus = 0.13275 (38) gca peak Fifth_Ventricle = 0.92085 (13) gca peak WM_hypointensities = 0.10414 (76) gca peak non_WM_hypointensities = 0.14695 (41) gca peak Optic_Chiasm = 0.51659 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.01 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.78 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 68777 voxels changed in iteration 0 of unlikely voxel relabeling 218 voxels changed in iteration 1 of unlikely voxel relabeling 6 voxels changed in iteration 2 of unlikely voxel relabeling 4 voxels changed in iteration 3 of unlikely voxel relabeling 1 voxels changed in iteration 4 of unlikely voxel relabeling 31533 gm and wm labels changed (%22 to gray, %78 to white out of all changed labels) 286 hippocampal voxels changed. 0 amygdala voxels changed. Reclassifying using Gibbs Priors pass 1: 64829 changed. image ll: -2.271, PF=0.500 pass 2: 15888 changed. image ll: -2.270, PF=0.500 pass 3: 4108 changed. 42700 voxels changed in iteration 0 of unlikely voxel relabeling 178 voxels changed in iteration 1 of unlikely voxel relabeling 7 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 6376 voxels changed in iteration 0 of unlikely voxel relabeling 73 voxels changed in iteration 1 of unlikely voxel relabeling 6 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 6224 voxels changed in iteration 0 of unlikely voxel relabeling 68 voxels changed in iteration 1 of unlikely voxel relabeling 11 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 4691 voxels changed in iteration 0 of unlikely voxel relabeling 24 voxels changed in iteration 1 of unlikely voxel relabeling 1 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling !!!!!!!!! ventricle segment 4 with volume 20917 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 0 with volume 569 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 0 with volume 25153 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 1 with volume 619 above threshold 100 - not erasing !!!!!!!!!! writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 1488.579620 mri_ca_label stimesec 1.971808 mri_ca_label ru_maxrss 2092728 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 1608804 mri_ca_label ru_majflt 11 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 1824 mri_ca_label ru_oublock 672 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 7 mri_ca_label ru_nivcsw 9511 auto-labeling took 24 minutes and 51 seconds. @#@FSTIME 2023:09:02:19:25:46 mri_ca_label N 10 e 1490.79 S 2.06 U 1488.57 P 99% M 2092728 F 11 R 1608808 W 0 c 9513 w 8 I 1824 O 672 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:19:50:37 mri_ca_label N 10 1.08 1.04 1.01 #-------------------------------------- #@# CC Seg Sat Sep 2 19:50:37 EDT 2023 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/cc_up.lta sub-032336_troubleshoot2_dup will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/transforms/cc_up.lta reading aseg from /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/aseg.auto_noCCseg.mgz reading norm from /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/norm.mgz MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 22444 voxels in left wm, 20141 in right wm, xrange [126, 132] searching rotation angles z=[-6 8], y=[-7 7] searching scale 1 Z rot -5.5 searching scale 1 Z rot -5.3 searching scale 1 Z rot -5.0 searching scale 1 Z rot -4.8 searching scale 1 Z rot -4.5 searching scale 1 Z rot -4.3 searching scale 1 Z rot -4.0 searching scale 1 Z rot -3.8 searching scale 1 Z rot -3.5 searching scale 1 Z rot -3.3 searching scale 1 Z rot -3.0 searching scale 1 Z rot -2.8 searching scale 1 Z rot -2.5 searching scale 1 Z rot -2.3 searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.8 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.3 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.8 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.3 searching scale 1 Z rot -0.0 searching scale 1 Z rot 0.2 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.7 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.2 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.7 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.2 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.7 searching scale 1 Z rot 3.0 searching scale 1 Z rot 3.2 searching scale 1 Z rot 3.5 searching scale 1 Z rot 3.7 searching scale 1 Z rot 4.0 searching scale 1 Z rot 4.2 searching scale 1 Z rot 4.5 searching scale 1 Z rot 4.7 searching scale 1 Z rot 5.0 searching scale 1 Z rot 5.2 searching scale 1 Z rot 5.5 searching scale 1 Z rot 5.7 searching scale 1 Z rot 6.0 searching scale 1 Z rot 6.2 searching scale 1 Z rot 6.5 searching scale 1 Z rot 6.7 searching scale 1 Z rot 7.0 searching scale 1 Z rot 7.2 searching scale 1 Z rot 7.5 searching scale 1 Z rot 7.7 searching scale 1 Z rot 8.0 searching scale 1 Z rot 8.2 global minimum found at slice 128.6, rotations (0.45, 1.48) final transformation (x=128.6, yr=0.446, zr=1.479): 0.99964 -0.02581 0.00778 0.90387; 0.02581 0.99967 0.00020 43.69207; -0.00778 0.00000 0.99997 42.00291; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 130] in xformed coordinates best xformed slice 128 min_x_fornix = 147 min_x_fornix = 146 min_x_fornix = 136 min_x_fornix = 139 min_x_fornix = 137 cc center is found at 128 81 87 eigenvectors: 0.00025 0.00173 1.00000; -0.31305 -0.94974 0.00172; 0.94974 -0.31305 0.00030; MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab error in mid anterior detected - correcting... writing aseg with callosum to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/aseg.auto.mgz... corpus callosum segmentation took 0.4 minutes #VMPC# mri_cc VmPeak 443684 mri_cc done @#@FSTIME 2023:09:02:19:50:37 mri_cc N 7 e 26.34 S 0.25 U 26.08 P 99% M 344032 F 7 R 277375 W 0 c 196 w 6 I 1096 O 664 L 1.08 1.04 1.01 @#@FSLOADPOST 2023:09:02:19:51:04 mri_cc N 7 1.06 1.03 1.01 #-------------------------------------- #@# Merge ASeg Sat Sep 2 19:51:04 EDT 2023 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Sat Sep 2 19:51:04 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_normalize -seed 1234 -f /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/tmp/control.dat -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 using control points from file /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/tmp/control.dat... assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... Reading 1028 control points... Doing gentle normalization with control points/label control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: No such file or directory error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! only using 1024 control points from file, mean 100.6, scaling by 1.09... building Voronoi diagram... performing soap bubble smoothing, sigma = 8... processing with aseg MRIcopyHeader(): source has ctab removing outliers in the aseg WM... MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 696 control points removed MRIcopyHeader(): source has ctab control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: Numerical argument out of domain error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: Numerical argument out of domain error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: Numerical argument out of domain error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! white matter peak found at 110 white matter peak found at 110 gm peak at 66 (66), valley at 34 (34) csf peak at 33, setting threshold to 55 control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: Numerical argument out of domain error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: Numerical argument out of domain error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! white matter peak found at 110 white matter peak found at 110 gm peak at 66 (66), valley at 43 (43) csf peak at 33, setting threshold to 55 control point 41 @ (250, 116, 49), MRI=0, skipping!!!!! control point 42 @ (233, 50, 49), MRI=0, skipping!!!!! control point 43 @ (233, 50, 49), MRI=0, skipping!!!!! control point 44 @ (233, 50, 49), MRI=0, skipping!!!!! error: Numerical argument out of domain error: !!!!! 11814806 control points rejected for being out of bounds !!!!!! building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 2 minutes and 37 seconds. @#@FSTIME 2023:09:02:19:51:04 mri_normalize N 11 e 158.52 S 0.93 U 157.57 P 99% M 1208884 F 0 R 683913 W 0 c 1050 w 1 I 0 O 2248 L 1.06 1.03 1.01 @#@FSLOADPOST 2023:09:02:19:53:42 mri_normalize N 11 1.14 1.06 1.01 #-------------------------------------------- #@# Mask BFS Sat Sep 2 19:53:42 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1199152 voxels in mask (pct= 7.15) Writing masked volume to brain.finalsurfs.mgz...done. @#@FSTIME 2023:09:02:19:53:42 mri_mask N 5 e 1.01 S 0.02 U 0.97 P 99% M 74240 F 7 R 17255 W 0 c 3 w 6 I 1096 O 2096 L 1.14 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:53:43 mri_mask N 5 1.12 1.06 1.01 #-------------------------------------------- #@# WM Segmentation Sat Sep 2 19:53:43 EDT 2023 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz @#@FSTIME 2023:09:02:19:53:43 AntsDenoiseImageFs N 4 e 27.79 S 0.12 U 27.65 P 99% M 350976 F 24 R 86486 W 0 c 156 w 20 I 4224 O 2304 L 1.12 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:54:11 AntsDenoiseImageFs N 4 1.08 1.05 1.01 mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 1, wsize = 13 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 13 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (105.0): 105.0 +- 5.7 [79.0 --> 125.0] CCS GM (70.0) : 68.4 +- 10.6 [30.0 --> 95.0] white_mean 105.043 white_sigma 5.65479 gray_mean 68.4019 gray_sigma 10.6461 setting bottom of white matter range wm_low to 79.0 setting top of gray matter range gray_hi to 89.7 wm_low 79.0481 wm_hi 125 gray_low 30 gray_hi 89.6942 Redoing initial intensity segmentation... Recomputing local statistics to label ambiguous voxels... wm_low 79.0481 wm_hi 125 gray_low 30 gray_hi 89.6942 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 89.6942, wm_low = 79.0481 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=89.6942, wmlow=79.0481 90102 voxels processed (0.54%) 39788 voxels white (0.24%) 50314 voxels non-white (0.30%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=74.0481, gray_hi=89.6942, wsize=13 155572 voxels tested (0.93%) 49942 voxels changed (0.30%) 31912 multi-scale searches (0.19%) Recovering bright white MRIrecoverBrightWhite() wm_low 79.0481 wm_hi 125 slack 5.65479 pct_thresh 0.33 intensity_thresh 130.655 nvox_thresh 8.58 1640 voxels tested (0.01%) 558 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=74.0481, hithr=89.6942 smoothing input volume with sigma = 0.250 71551 voxels tested (0.43%) 15858 voxels changed (0.09%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 8948 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 3446 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 7660 filled MRIfindBrightNonWM(): 8782 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 0.9 minutes writing output to wm.seg.mgz... @#@FSTIME 2023:09:02:19:54:11 mri_segment N 5 e 53.87 S 0.23 U 53.62 P 99% M 148668 F 5 R 211482 W 0 c 305 w 5 I 912 O 864 L 1.08 1.05 1.01 @#@FSLOADPOST 2023:09:02:19:55:05 mri_segment N 5 1.07 1.05 1.01 mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.38 minutes reading wm segmentation from wm.seg.mgz... MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 0 voxels added to wm to prevent paths from MTL structures to cortex 3583 additional wm voxels added 0 additional wm voxels added SEG EDIT: 92632 voxels turned on, 41603 voxels turned off. propagating editing to output volume from wm.seg.mgz writing edited volume to wm.asegedit.mgz.... @#@FSTIME 2023:09:02:19:55:05 mri_edit_wm_with_aseg N 5 e 22.88 S 0.27 U 22.60 P 99% M 462144 F 10 R 316157 W 0 c 153 w 6 I 1384 O 784 L 1.07 1.05 1.01 @#@FSLOADPOST 2023:09:02:19:55:28 mri_edit_wm_with_aseg N 5 1.19 1.08 1.02 mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 45 found - 45 modified | TOTAL: 45 pass 2 (xy+): 0 found - 45 modified | TOTAL: 45 pass 1 (xy-): 73 found - 73 modified | TOTAL: 118 pass 2 (xy-): 0 found - 73 modified | TOTAL: 118 pass 1 (yz+): 58 found - 58 modified | TOTAL: 176 pass 2 (yz+): 0 found - 58 modified | TOTAL: 176 pass 1 (yz-): 39 found - 39 modified | TOTAL: 215 pass 2 (yz-): 0 found - 39 modified | TOTAL: 215 pass 1 (xz+): 44 found - 44 modified | TOTAL: 259 pass 2 (xz+): 0 found - 44 modified | TOTAL: 259 pass 1 (xz-): 89 found - 89 modified | TOTAL: 348 pass 2 (xz-): 0 found - 89 modified | TOTAL: 348 Iteration Number : 1 pass 1 (+++): 20 found - 20 modified | TOTAL: 20 pass 2 (+++): 0 found - 20 modified | TOTAL: 20 pass 1 (+++): 37 found - 37 modified | TOTAL: 57 pass 2 (+++): 0 found - 37 modified | TOTAL: 57 pass 1 (+++): 21 found - 21 modified | TOTAL: 78 pass 2 (+++): 0 found - 21 modified | TOTAL: 78 pass 1 (+++): 45 found - 45 modified | TOTAL: 123 pass 2 (+++): 0 found - 45 modified | TOTAL: 123 Iteration Number : 1 pass 1 (++): 180 found - 180 modified | TOTAL: 180 pass 2 (++): 0 found - 180 modified | TOTAL: 180 pass 1 (+-): 112 found - 112 modified | TOTAL: 292 pass 2 (+-): 1 found - 113 modified | TOTAL: 293 pass 3 (+-): 0 found - 113 modified | TOTAL: 293 pass 1 (--): 125 found - 125 modified | TOTAL: 418 pass 2 (--): 0 found - 125 modified | TOTAL: 418 pass 1 (-+): 105 found - 105 modified | TOTAL: 523 pass 2 (-+): 0 found - 105 modified | TOTAL: 523 Iteration Number : 2 pass 1 (xy+): 14 found - 14 modified | TOTAL: 14 pass 2 (xy+): 0 found - 14 modified | TOTAL: 14 pass 1 (xy-): 3 found - 3 modified | TOTAL: 17 pass 2 (xy-): 0 found - 3 modified | TOTAL: 17 pass 1 (yz+): 4 found - 4 modified | TOTAL: 21 pass 2 (yz+): 0 found - 4 modified | TOTAL: 21 pass 1 (yz-): 7 found - 7 modified | TOTAL: 28 pass 2 (yz-): 0 found - 7 modified | TOTAL: 28 pass 1 (xz+): 6 found - 6 modified | TOTAL: 34 pass 2 (xz+): 0 found - 6 modified | TOTAL: 34 pass 1 (xz-): 4 found - 4 modified | TOTAL: 38 pass 2 (xz-): 0 found - 4 modified | TOTAL: 38 Iteration Number : 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 4 pass 2 (+++): 0 found - 2 modified | TOTAL: 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 4 Iteration Number : 2 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 6 found - 6 modified | TOTAL: 8 pass 2 (+-): 0 found - 6 modified | TOTAL: 8 pass 1 (--): 6 found - 6 modified | TOTAL: 14 pass 2 (--): 0 found - 6 modified | TOTAL: 14 pass 1 (-+): 4 found - 4 modified | TOTAL: 18 pass 2 (-+): 0 found - 4 modified | TOTAL: 18 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 1 found - 1 modified | TOTAL: 1 pass 2 (xz+): 0 found - 1 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 1055 (out of 507593: 0.207844) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done @#@FSTIME 2023:09:02:19:55:28 mri_pretess N 4 e 2.59 S 0.03 U 2.54 P 99% M 56960 F 19 R 12937 W 0 c 9 w 18 I 3528 O 792 L 1.19 1.08 1.02 @#@FSLOADPOST 2023:09:02:19:55:30 mri_pretess N 4 1.19 1.08 1.02 #-------------------------------------------- #@# Fill Sat Sep 2 19:55:30 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /home/aiisc/Downloads/freesurfer/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.12052 -0.00675 0.01220 -18.68985; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30937; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.12052 -0.00675 0.01220 -18.68985; 0.00066 1.14023 0.51394 -39.20070; -0.02193 -0.46323 0.93151 55.30937; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab Looking for area (min, max) = (350, 1400) area[0] = 1638 (min = 350, max = 1400), aspect = 0.47 (min = 0.10, max = 0.75) need search nearby using seed (126, 121, 157), TAL = (2.0, 29.0, 7.0) talairach voxel to voxel transform 0.89221 0.00043 -0.01193 17.35192; -0.00816 0.71643 -0.39517 49.78863; 0.01695 0.35629 0.87673 -34.20811; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 121, 157) --> (2.0, 29.0, 7.0) done. filling took 0.9 minutes talairach cc position changed to (2.00, 29.00, 7.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, 29.00, 7.00) SRC: (111.89, 73.55, 148.38) search lh wm seed point around talairach space (-16.00, 29.00, 7.00), SRC: (144.01, 73.26, 148.99) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... @#@FSTIME 2023:09:02:19:55:30 mri_fill N 10 e 56.05 S 0.83 U 55.20 P 99% M 914512 F 8 R 481236 W 0 c 388 w 7 I 1400 O 240 L 1.19 1.08 1.02 @#@FSLOADPOST 2023:09:02:19:56:27 mri_fill N 10 1.08 1.07 1.01 cp filled.mgz filled.auto.mgz #-------------------------------------------- #@# Tessellate lh Sat Sep 2 19:56:27 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 3 found - 3 modified | TOTAL: 6 pass 2 (xy-): 0 found - 3 modified | TOTAL: 6 pass 1 (yz+): 6 found - 6 modified | TOTAL: 12 pass 2 (yz+): 0 found - 6 modified | TOTAL: 12 pass 1 (yz-): 10 found - 10 modified | TOTAL: 22 pass 2 (yz-): 0 found - 10 modified | TOTAL: 22 pass 1 (xz+): 0 found - 0 modified | TOTAL: 22 pass 1 (xz-): 2 found - 2 modified | TOTAL: 24 pass 2 (xz-): 0 found - 2 modified | TOTAL: 24 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 2 found - 2 modified | TOTAL: 4 pass 2 (-+): 0 found - 2 modified | TOTAL: 4 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 28 (out of 231483: 0.012096) Ambiguous edge configurations... mri_pretess done @#@FSTIME 2023:09:02:19:56:27 mri_pretess N 4 e 1.32 S 0.01 U 1.30 P 99% M 40448 F 0 R 8813 W 0 c 5 w 1 I 0 O 232 L 1.08 1.07 1.01 @#@FSLOADPOST 2023:09:02:19:56:28 mri_pretess N 4 1.07 1.07 1.01 mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix 7.2.0 7.2.0 slice 40: 2718 vertices, 2933 faces slice 50: 10367 vertices, 10654 faces slice 60: 19956 vertices, 20331 faces slice 70: 30097 vertices, 30455 faces slice 80: 39507 vertices, 39807 faces slice 90: 48276 vertices, 48592 faces slice 100: 57411 vertices, 57741 faces slice 110: 66357 vertices, 66693 faces slice 120: 75181 vertices, 75510 faces slice 130: 83471 vertices, 83789 faces slice 140: 91228 vertices, 91487 faces slice 150: 98112 vertices, 98349 faces slice 160: 104358 vertices, 104560 faces slice 170: 109225 vertices, 109362 faces slice 180: 112335 vertices, 112414 faces slice 190: 112960 vertices, 112964 faces slice 200: 112960 vertices, 112964 faces slice 210: 112960 vertices, 112964 faces slice 220: 112960 vertices, 112964 faces slice 230: 112960 vertices, 112964 faces slice 240: 112960 vertices, 112964 faces slice 250: 112960 vertices, 112964 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; @#@FSTIME 2023:09:02:19:56:28 mri_tessellate N 3 e 1.12 S 0.01 U 1.09 P 99% M 35712 F 7 R 7878 W 0 c 11 w 5 I 1160 O 5304 L 1.07 1.07 1.01 @#@FSLOADPOST 2023:09:02:19:56:29 mri_tessellate N 3 1.07 1.07 1.01 rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 112960 voxel in cpt #1: X=-4 [v=112960,e=338892,f=225928] located at (-25.454224, -27.987499, 41.724319) For the whole surface: X=-4 [v=112960,e=338892,f=225928] One single component has been found nothing to do done @#@FSTIME 2023:09:02:19:56:29 mris_extract_main_component N 2 e 0.58 S 0.07 U 0.49 P 98% M 225696 F 19 R 59351 W 0 c 3 w 17 I 3256 O 7944 L 1.07 1.07 1.01 @#@FSLOADPOST 2023:09:02:19:56:30 mris_extract_main_component N 2 1.07 1.07 1.01 #-------------------------------------------- #@# Tessellate rh Sat Sep 2 19:56:30 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 7 found - 7 modified | TOTAL: 8 pass 2 (xy-): 0 found - 7 modified | TOTAL: 8 pass 1 (yz+): 6 found - 6 modified | TOTAL: 14 pass 2 (yz+): 0 found - 6 modified | TOTAL: 14 pass 1 (yz-): 7 found - 7 modified | TOTAL: 21 pass 2 (yz-): 0 found - 7 modified | TOTAL: 21 pass 1 (xz+): 1 found - 1 modified | TOTAL: 22 pass 2 (xz+): 0 found - 1 modified | TOTAL: 22 pass 1 (xz-): 0 found - 0 modified | TOTAL: 22 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 0 found - 0 modified | TOTAL: 2 pass 1 (--): 0 found - 0 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 24 (out of 245423: 0.009779) Ambiguous edge configurations... mri_pretess done @#@FSTIME 2023:09:02:19:56:30 mri_pretess N 4 e 1.26 S 0.02 U 1.24 P 100% M 40448 F 0 R 8811 W 0 c 7 w 1 I 0 O 232 L 1.07 1.07 1.01 @#@FSLOADPOST 2023:09:02:19:56:31 mri_pretess N 4 1.07 1.07 1.01 mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix 7.2.0 7.2.0 slice 40: 2590 vertices, 2800 faces slice 50: 10107 vertices, 10456 faces slice 60: 20059 vertices, 20369 faces slice 70: 30561 vertices, 30950 faces slice 80: 40187 vertices, 40502 faces slice 90: 49274 vertices, 49564 faces slice 100: 58355 vertices, 58679 faces slice 110: 67694 vertices, 68049 faces slice 120: 76769 vertices, 77100 faces slice 130: 84992 vertices, 85302 faces slice 140: 92775 vertices, 93034 faces slice 150: 99954 vertices, 100232 faces slice 160: 106507 vertices, 106719 faces slice 170: 112068 vertices, 112248 faces slice 180: 115649 vertices, 115747 faces slice 190: 116716 vertices, 116726 faces slice 200: 116716 vertices, 116726 faces slice 210: 116716 vertices, 116726 faces slice 220: 116716 vertices, 116726 faces slice 230: 116716 vertices, 116726 faces slice 240: 116716 vertices, 116726 faces slice 250: 116716 vertices, 116726 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; @#@FSTIME 2023:09:02:19:56:31 mri_tessellate N 3 e 1.11 S 0.01 U 1.09 P 99% M 35968 F 0 R 7962 W 0 c 8 w 1 I 0 O 5480 L 1.07 1.07 1.01 @#@FSLOADPOST 2023:09:02:19:56:32 mri_tessellate N 3 1.07 1.07 1.01 rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 116716 voxel in cpt #1: X=-10 [v=116716,e=350178,f=233452] located at (24.577135, -26.911169, 41.343620) For the whole surface: X=-10 [v=116716,e=350178,f=233452] One single component has been found nothing to do done @#@FSTIME 2023:09:02:19:56:32 mris_extract_main_component N 2 e 0.65 S 0.07 U 0.57 P 99% M 233088 F 0 R 60791 W 0 c 4 w 1 I 0 O 8216 L 1.07 1.07 1.01 @#@FSLOADPOST 2023:09:02:19:56:33 mris_extract_main_component N 2 1.06 1.06 1.01 #-------------------------------------------- #@# Smooth1 lh Sat Sep 2 19:56:33 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2023:09:02:19:56:33 mris_smooth N 5 e 1.85 S 0.07 U 1.78 P 99% M 180292 F 6 R 53672 W 0 c 7 w 4 I 920 O 7952 L 1.06 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:56:35 mris_smooth N 5 1.06 1.06 1.01 #-------------------------------------------- #@# Smooth1 rh Sat Sep 2 19:56:35 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2023:09:02:19:56:35 mris_smooth N 5 e 1.90 S 0.05 U 1.84 P 99% M 186096 F 0 R 51919 W 0 c 10 w 1 I 0 O 8216 L 1.06 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:56:37 mris_smooth N 5 1.06 1.06 1.01 #-------------------------------------------- #@# Inflation1 lh Sat Sep 2 19:56:37 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 46.3 mm, total surface area = 60180 mm^2 step 000: RMS=0.150 (target=0.015) step 005: RMS=0.110 (target=0.015) step 010: RMS=0.079 (target=0.015) step 015: RMS=0.064 (target=0.015) step 020: RMS=0.053 (target=0.015) step 025: RMS=0.045 (target=0.015) step 030: RMS=0.039 (target=0.015) step 035: RMS=0.035 (target=0.015) step 040: RMS=0.032 (target=0.015) step 045: RMS=0.030 (target=0.015) step 050: RMS=0.028 (target=0.015) step 055: RMS=0.027 (target=0.015) step 060: RMS=0.026 (target=0.015) writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 12.108055 mris_inflate stimesec 0.532002 mris_inflate ru_maxrss 180172 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 480832 mris_inflate ru_majflt 19 mris_inflate ru_nswap 0 mris_inflate ru_inblock 3728 mris_inflate ru_oublock 7952 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 17 mris_inflate ru_nivcsw 78 @#@FSTIME 2023:09:02:19:56:37 mris_inflate N 3 e 12.65 S 0.54 U 12.10 P 99% M 180172 F 19 R 480837 W 0 c 78 w 18 I 3728 O 7952 L 1.06 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:56:49 mris_inflate N 3 1.05 1.06 1.01 #-------------------------------------------- #@# Inflation1 rh Sat Sep 2 19:56:49 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 47.2 mm, total surface area = 62419 mm^2 step 000: RMS=0.149 (target=0.015) step 005: RMS=0.111 (target=0.015) step 010: RMS=0.079 (target=0.015) step 015: RMS=0.064 (target=0.015) step 020: RMS=0.054 (target=0.015) step 025: RMS=0.047 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.036 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.033 (target=0.015) step 050: RMS=0.031 (target=0.015) step 055: RMS=0.031 (target=0.015) step 060: RMS=0.031 (target=0.015) writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.2 minutes inflation complete. Not saving sulc mris_inflate utimesec 12.451322 mris_inflate stimesec 0.595967 mris_inflate ru_maxrss 186092 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 487739 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8216 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 57 @#@FSTIME 2023:09:02:19:56:49 mris_inflate N 3 e 13.05 S 0.60 U 12.45 P 99% M 186092 F 0 R 487744 W 0 c 57 w 1 I 0 O 8216 L 1.05 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:57:02 mris_inflate N 3 1.04 1.06 1.01 #-------------------------------------------- #@# QSphere lh Sat Sep 2 19:57:02 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 scaling brain by 0.350... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.07 +- 0.62 (0.00-->6.26) (max @ vno 89573 --> 89595) face area 0.03 +- 0.04 (-0.07-->0.69) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=175.296, avgs=0 005/300: dt: 0.9000, rms radial error=175.042, avgs=0 010/300: dt: 0.9000, rms radial error=174.498, avgs=0 015/300: dt: 0.9000, rms radial error=173.783, avgs=0 020/300: dt: 0.9000, rms radial error=172.968, avgs=0 025/300: dt: 0.9000, rms radial error=172.094, avgs=0 030/300: dt: 0.9000, rms radial error=171.187, avgs=0 035/300: dt: 0.9000, rms radial error=170.262, avgs=0 040/300: dt: 0.9000, rms radial error=169.328, avgs=0 045/300: dt: 0.9000, rms radial error=168.391, avgs=0 050/300: dt: 0.9000, rms radial error=167.454, avgs=0 055/300: dt: 0.9000, rms radial error=166.518, avgs=0 060/300: dt: 0.9000, rms radial error=165.587, avgs=0 065/300: dt: 0.9000, rms radial error=164.660, avgs=0 070/300: dt: 0.9000, rms radial error=163.736, avgs=0 075/300: dt: 0.9000, rms radial error=162.816, avgs=0 080/300: dt: 0.9000, rms radial error=161.901, avgs=0 085/300: dt: 0.9000, rms radial error=160.991, avgs=0 090/300: dt: 0.9000, rms radial error=160.084, avgs=0 095/300: dt: 0.9000, rms radial error=159.182, avgs=0 100/300: dt: 0.9000, rms radial error=158.285, avgs=0 105/300: dt: 0.9000, rms radial error=157.392, avgs=0 110/300: dt: 0.9000, rms radial error=156.504, avgs=0 115/300: dt: 0.9000, rms radial error=155.624, avgs=0 120/300: dt: 0.9000, rms radial error=154.749, avgs=0 125/300: dt: 0.9000, rms radial error=153.878, avgs=0 130/300: dt: 0.9000, rms radial error=153.012, avgs=0 135/300: dt: 0.9000, rms radial error=152.152, avgs=0 140/300: dt: 0.9000, rms radial error=151.296, avgs=0 145/300: dt: 0.9000, rms radial error=150.444, avgs=0 150/300: dt: 0.9000, rms radial error=149.597, avgs=0 155/300: dt: 0.9000, rms radial error=148.755, avgs=0 160/300: dt: 0.9000, rms radial error=147.918, avgs=0 165/300: dt: 0.9000, rms radial error=147.085, avgs=0 170/300: dt: 0.9000, rms radial error=146.258, avgs=0 175/300: dt: 0.9000, rms radial error=145.435, avgs=0 180/300: dt: 0.9000, rms radial error=144.616, avgs=0 185/300: dt: 0.9000, rms radial error=143.802, avgs=0 190/300: dt: 0.9000, rms radial error=142.993, avgs=0 195/300: dt: 0.9000, rms radial error=142.188, avgs=0 200/300: dt: 0.9000, rms radial error=141.387, avgs=0 205/300: dt: 0.9000, rms radial error=140.592, avgs=0 210/300: dt: 0.9000, rms radial error=139.801, avgs=0 215/300: dt: 0.9000, rms radial error=139.015, avgs=0 220/300: dt: 0.9000, rms radial error=138.233, avgs=0 225/300: dt: 0.9000, rms radial error=137.456, avgs=0 230/300: dt: 0.9000, rms radial error=136.683, avgs=0 235/300: dt: 0.9000, rms radial error=135.914, avgs=0 240/300: dt: 0.9000, rms radial error=135.149, avgs=0 245/300: dt: 0.9000, rms radial error=134.388, avgs=0 250/300: dt: 0.9000, rms radial error=133.632, avgs=0 255/300: dt: 0.9000, rms radial error=132.880, avgs=0 260/300: dt: 0.9000, rms radial error=132.132, avgs=0 265/300: dt: 0.9000, rms radial error=131.389, avgs=0 270/300: dt: 0.9000, rms radial error=130.649, avgs=0 275/300: dt: 0.9000, rms radial error=129.914, avgs=0 280/300: dt: 0.9000, rms radial error=129.182, avgs=0 285/300: dt: 0.9000, rms radial error=128.455, avgs=0 290/300: dt: 0.9000, rms radial error=127.732, avgs=0 295/300: dt: 0.9000, rms radial error=127.013, avgs=0 300/300: dt: 0.9000, rms radial error=126.298, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 12634.32 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00048 epoch 2 (K=40.0), pass 1, starting sse = 1893.78 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.02/13 = 0.00142 epoch 3 (K=160.0), pass 1, starting sse = 148.33 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.24/19 = 0.01285 epoch 4 (K=640.0), pass 1, starting sse = 4.04 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.32/28 = 0.01150 final distance error %100000.00 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.0259 hours FSRUNTIME@ mris_sphere 0.0259 hours 1 threads #VMPC# mris_sphere VmPeak 448512 mris_sphere done @#@FSTIME 2023:09:02:19:57:02 mris_sphere N 9 e 93.17 S 4.05 U 89.09 P 99% M 184376 F 13 R 3219863 W 0 c 549 w 8 I 1872 O 7952 L 1.04 1.06 1.01 @#@FSLOADPOST 2023:09:02:19:58:36 mris_sphere N 9 1.03 1.05 1.00 #-------------------------------------------- #@# QSphere rh Sat Sep 2 19:58:36 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 scaling brain by 0.344... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.06 +- 0.60 (0.00-->6.56) (max @ vno 49865 --> 50710) face area 0.03 +- 0.04 (-0.13-->0.70) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=175.298, avgs=0 005/300: dt: 0.9000, rms radial error=175.045, avgs=0 010/300: dt: 0.9000, rms radial error=174.503, avgs=0 015/300: dt: 0.9000, rms radial error=173.789, avgs=0 020/300: dt: 0.9000, rms radial error=172.976, avgs=0 025/300: dt: 0.9000, rms radial error=172.105, avgs=0 030/300: dt: 0.9000, rms radial error=171.201, avgs=0 035/300: dt: 0.9000, rms radial error=170.279, avgs=0 040/300: dt: 0.9000, rms radial error=169.348, avgs=0 045/300: dt: 0.9000, rms radial error=168.414, avgs=0 050/300: dt: 0.9000, rms radial error=167.479, avgs=0 055/300: dt: 0.9000, rms radial error=166.545, avgs=0 060/300: dt: 0.9000, rms radial error=165.614, avgs=0 065/300: dt: 0.9000, rms radial error=164.687, avgs=0 070/300: dt: 0.9000, rms radial error=163.762, avgs=0 075/300: dt: 0.9000, rms radial error=162.842, avgs=0 080/300: dt: 0.9000, rms radial error=161.926, avgs=0 085/300: dt: 0.9000, rms radial error=161.013, avgs=0 090/300: dt: 0.9000, rms radial error=160.107, avgs=0 095/300: dt: 0.9000, rms radial error=159.206, avgs=0 100/300: dt: 0.9000, rms radial error=158.311, avgs=0 105/300: dt: 0.9000, rms radial error=157.422, avgs=0 110/300: dt: 0.9000, rms radial error=156.537, avgs=0 115/300: dt: 0.9000, rms radial error=155.657, avgs=0 120/300: dt: 0.9000, rms radial error=154.781, avgs=0 125/300: dt: 0.9000, rms radial error=153.911, avgs=0 130/300: dt: 0.9000, rms radial error=153.045, avgs=0 135/300: dt: 0.9000, rms radial error=152.184, avgs=0 140/300: dt: 0.9000, rms radial error=151.328, avgs=0 145/300: dt: 0.9000, rms radial error=150.477, avgs=0 150/300: dt: 0.9000, rms radial error=149.631, avgs=0 155/300: dt: 0.9000, rms radial error=148.789, avgs=0 160/300: dt: 0.9000, rms radial error=147.952, avgs=0 165/300: dt: 0.9000, rms radial error=147.119, avgs=0 170/300: dt: 0.9000, rms radial error=146.291, avgs=0 175/300: dt: 0.9000, rms radial error=145.468, avgs=0 180/300: dt: 0.9000, rms radial error=144.650, avgs=0 185/300: dt: 0.9000, rms radial error=143.836, avgs=0 190/300: dt: 0.9000, rms radial error=143.028, avgs=0 195/300: dt: 0.9000, rms radial error=142.224, avgs=0 200/300: dt: 0.9000, rms radial error=141.424, avgs=0 205/300: dt: 0.9000, rms radial error=140.629, avgs=0 210/300: dt: 0.9000, rms radial error=139.839, avgs=0 215/300: dt: 0.9000, rms radial error=139.053, avgs=0 220/300: dt: 0.9000, rms radial error=138.271, avgs=0 225/300: dt: 0.9000, rms radial error=137.494, avgs=0 230/300: dt: 0.9000, rms radial error=136.720, avgs=0 235/300: dt: 0.9000, rms radial error=135.952, avgs=0 240/300: dt: 0.9000, rms radial error=135.187, avgs=0 245/300: dt: 0.9000, rms radial error=134.427, avgs=0 250/300: dt: 0.9000, rms radial error=133.671, avgs=0 255/300: dt: 0.9000, rms radial error=132.920, avgs=0 260/300: dt: 0.9000, rms radial error=132.172, avgs=0 265/300: dt: 0.9000, rms radial error=131.429, avgs=0 270/300: dt: 0.9000, rms radial error=130.689, avgs=0 275/300: dt: 0.9000, rms radial error=129.954, avgs=0 280/300: dt: 0.9000, rms radial error=129.223, avgs=0 285/300: dt: 0.9000, rms radial error=128.496, avgs=0 290/300: dt: 0.9000, rms radial error=127.773, avgs=0 295/300: dt: 0.9000, rms radial error=127.054, avgs=0 300/300: dt: 0.9000, rms radial error=126.339, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13134.72 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00048 epoch 2 (K=40.0), pass 1, starting sse = 1976.47 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.02/13 = 0.00132 epoch 3 (K=160.0), pass 1, starting sse = 156.45 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.23/20 = 0.01152 epoch 4 (K=640.0), pass 1, starting sse = 4.62 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.12/27 = 0.00449 final distance error %100000.00 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.0272 hours FSRUNTIME@ mris_sphere 0.0272 hours 1 threads #VMPC# mris_sphere VmPeak 454452 mris_sphere done @#@FSTIME 2023:09:02:19:58:36 mris_sphere N 9 e 97.95 S 4.06 U 93.87 P 99% M 190612 F 0 R 3398240 W 0 c 577 w 1 I 0 O 8216 L 1.03 1.05 1.00 @#@FSLOADPOST 2023:09:02:20:00:14 mris_sphere N 9 1.00 1.03 1.00 #@# Fix Topology lh Sat Sep 2 20:00:14 EDT 2023 mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 sub-032336_troubleshoot2_dup lh reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 7.2.0 7.2.0 before topology correction, eno=-4 (nv=112960, nf=225928, ne=338892, g=3) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 431 ambiguous faces found in tessellation segmenting defects... 12 defects found, arbitrating ambiguous regions... analyzing neighboring defects... 12 defects to be corrected 0 vertices coincident reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8251 (-4.9126) -vertex loglikelihood: -7.0253 (-3.5127) -normal dot loglikelihood: -3.6483 (-3.6483) -quad curv loglikelihood: -6.3617 (-3.1809) Total Loglikelihood : -26.8605 CORRECTING DEFECT 0 (vertices=24, convex hull=30, v0=1686) After retessellation of defect 0 (v0=1686), euler #=-9 (112677,337896,225210) : difference with theory (-9) = 0 CORRECTING DEFECT 1 (vertices=12, convex hull=26, v0=2501) After retessellation of defect 1 (v0=2501), euler #=-8 (112680,337913,225225) : difference with theory (-8) = 0 CORRECTING DEFECT 2 (vertices=77, convex hull=61, v0=5381) After retessellation of defect 2 (v0=5381), euler #=-7 (112699,337993,225287) : difference with theory (-7) = 0 CORRECTING DEFECT 3 (vertices=25, convex hull=41, v0=10367) After retessellation of defect 3 (v0=10367), euler #=-6 (112708,338033,225319) : difference with theory (-6) = 0 CORRECTING DEFECT 4 (vertices=25, convex hull=49, v0=48022) After retessellation of defect 4 (v0=48022), euler #=-5 (112717,338078,225356) : difference with theory (-5) = 0 CORRECTING DEFECT 5 (vertices=5, convex hull=24, v0=53151) After retessellation of defect 5 (v0=53151), euler #=-4 (112719,338091,225368) : difference with theory (-4) = 0 CORRECTING DEFECT 6 (vertices=10, convex hull=13, v0=57661) After retessellation of defect 6 (v0=57661), euler #=-3 (112721,338101,225377) : difference with theory (-3) = 0 CORRECTING DEFECT 7 (vertices=5, convex hull=29, v0=59750) After retessellation of defect 7 (v0=59750), euler #=-2 (112723,338114,225389) : difference with theory (-2) = 0 CORRECTING DEFECT 8 (vertices=40, convex hull=33, v0=75686) After retessellation of defect 8 (v0=75686), euler #=-1 (112726,338132,225405) : difference with theory (-1) = 0 CORRECTING DEFECT 9 (vertices=14, convex hull=40, v0=77252) After retessellation of defect 9 (v0=77252), euler #=0 (112729,338153,225424) : difference with theory (0) = 0 CORRECTING DEFECT 10 (vertices=21, convex hull=55, v0=81421) After retessellation of defect 10 (v0=81421), euler #=1 (112741,338209,225469) : difference with theory (1) = 0 CORRECTING DEFECT 11 (vertices=29, convex hull=25, v0=87353) After retessellation of defect 11 (v0=87353), euler #=2 (112744,338226,225484) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.21 (0.13-->4.04) (max @ vno 81174 --> 84604) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.21 (0.13-->4.04) (max @ vno 81174 --> 84604) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 59 mutations (42.8%), 79 crossovers (57.2%), 3 vertices were eliminated building final representation... 216 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=112744, nf=225484, ne=338226, g=0) writing corrected surface to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 21 intersecting terminating search with 0 intersecting topology fixing took 0.3 minutes FSRUNTIME@ mris_fix_topology lh 0.0057 hours 1 threads #VMPC# mris_fix_topology VmPeak 739240 @#@FSTIME 2023:09:02:20:00:14 mris_fix_topology N 14 e 20.45 S 0.26 U 20.17 P 99% M 709804 F 11 R 208294 W 0 c 148 w 7 I 1520 O 10600 L 1.00 1.03 1.00 @#@FSLOADPOST 2023:09:02:20:00:34 mris_fix_topology N 14 1.00 1.03 1.00 #@# Fix Topology rh Sat Sep 2 20:00:34 EDT 2023 mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 sub-032336_troubleshoot2_dup rh reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 7.2.0 7.2.0 before topology correction, eno=-10 (nv=116716, nf=233452, ne=350178, g=6) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 1348 ambiguous faces found in tessellation segmenting defects... 16 defects found, arbitrating ambiguous regions... analyzing neighboring defects... 16 defects to be corrected 0 vertices coincident reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.8040 (-4.9020) -vertex loglikelihood: -6.9600 (-3.4800) -normal dot loglikelihood: -3.7021 (-3.7021) -quad curv loglikelihood: -6.2143 (-3.1071) Total Loglikelihood : -26.6804 CORRECTING DEFECT 0 (vertices=171, convex hull=79, v0=35) After retessellation of defect 0 (v0=35), euler #=-13 (115920,347498,231565) : difference with theory (-13) = 0 CORRECTING DEFECT 1 (vertices=44, convex hull=81, v0=2360) After retessellation of defect 1 (v0=2360), euler #=-12 (115934,347574,231628) : difference with theory (-12) = 0 CORRECTING DEFECT 2 (vertices=136, convex hull=81, v0=14817) After retessellation of defect 2 (v0=14817), euler #=-11 (115955,347673,231707) : difference with theory (-11) = 0 CORRECTING DEFECT 3 (vertices=58, convex hull=69, v0=54273) After retessellation of defect 3 (v0=54273), euler #=-10 (115964,347728,231754) : difference with theory (-10) = 0 CORRECTING DEFECT 4 (vertices=5, convex hull=42, v0=59767) After retessellation of defect 4 (v0=59767), euler #=-9 (115966,347750,231775) : difference with theory (-9) = 0 CORRECTING DEFECT 5 (vertices=60, convex hull=79, v0=62598) After retessellation of defect 5 (v0=62598), euler #=-8 (115980,347824,231836) : difference with theory (-8) = 0 CORRECTING DEFECT 6 (vertices=5, convex hull=31, v0=63849) After retessellation of defect 6 (v0=63849), euler #=-7 (115982,347837,231848) : difference with theory (-7) = 0 CORRECTING DEFECT 7 (vertices=57, convex hull=39, v0=64766) After retessellation of defect 7 (v0=64766), euler #=-6 (115998,347900,231896) : difference with theory (-6) = 0 CORRECTING DEFECT 8 (vertices=10, convex hull=22, v0=65431) After retessellation of defect 8 (v0=65431), euler #=-5 (115999,347911,231907) : difference with theory (-5) = 0 CORRECTING DEFECT 9 (vertices=35, convex hull=27, v0=73742) After retessellation of defect 9 (v0=73742), euler #=-4 (116006,347939,231929) : difference with theory (-4) = 0 CORRECTING DEFECT 10 (vertices=51, convex hull=80, v0=82339) After retessellation of defect 10 (v0=82339), euler #=-3 (116020,348013,231990) : difference with theory (-3) = 0 CORRECTING DEFECT 11 (vertices=7, convex hull=13, v0=83838) After retessellation of defect 11 (v0=83838), euler #=-2 (116022,348021,231997) : difference with theory (-2) = 0 CORRECTING DEFECT 12 (vertices=26, convex hull=22, v0=86352) After retessellation of defect 12 (v0=86352), euler #=-1 (116027,348042,232014) : difference with theory (-1) = 0 CORRECTING DEFECT 13 (vertices=42, convex hull=33, v0=88069) After retessellation of defect 13 (v0=88069), euler #=0 (116036,348080,232044) : difference with theory (0) = 0 CORRECTING DEFECT 14 (vertices=70, convex hull=36, v0=93920) After retessellation of defect 14 (v0=93920), euler #=1 (116044,348115,232072) : difference with theory (1) = 0 CORRECTING DEFECT 15 (vertices=41, convex hull=34, v0=108497) After retessellation of defect 15 (v0=108497), euler #=2 (116050,348144,232096) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.21 (0.09-->7.22) (max @ vno 17604 --> 24490) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.21 (0.09-->7.22) (max @ vno 17604 --> 24490) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 49 mutations (34.3%), 94 crossovers (65.7%), 52 vertices were eliminated building final representation... 666 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=116050, nf=232096, ne=348144, g=0) writing corrected surface to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 87 intersecting 001: 2 intersecting step 1 with no progress (num=5, old_num=2) 002: 5 intersecting terminating search with 0 intersecting topology fixing took 0.7 minutes FSRUNTIME@ mris_fix_topology rh 0.0111 hours 1 threads #VMPC# mris_fix_topology VmPeak 743160 @#@FSTIME 2023:09:02:20:00:34 mris_fix_topology N 14 e 39.94 S 0.31 U 39.62 P 99% M 713832 F 0 R 211057 W 0 c 276 w 1 I 0 O 10904 L 1.00 1.03 1.00 @#@FSLOADPOST 2023:09:02:20:01:14 mris_fix_topology N 14 1.00 1.02 1.00 mris_euler_number ../surf/lh.orig.premesh euler # = v-e+f = 2g-2: 112744 - 338226 + 225484 = 2 --> 0 holes F =2V-4: 225484 = 225488-4 (0) 2E=3F: 676452 = 676452 (0) total defect index = 0 mris_euler_number ../surf/rh.orig.premesh euler # = v-e+f = 2g-2: 116050 - 348144 + 232096 = 2 --> 0 holes F =2V-4: 232096 = 232100-4 (0) 2E=3F: 696288 = 696288 (0) total defect index = 0 Sat Sep 2 20:01:15 EDT 2023 setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts /home/aiisc/Downloads/freesurfer/bin/defect2seg --s sub-032336_troubleshoot2_dup freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b defect2seg 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux pid 1065303 mri_label2vol --defects /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig.nofix /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.defect_labels /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz 1000 0 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/surface.defects.mgz mri_label2vol supposed to be reproducible but seed not set Changing input type 0 to MRI_INT Converting defects to volume: offset=1000, merge=0 Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/surface.defects.mgz mris_defects_pointset -s /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig.nofix -d /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.defect_labels -o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.defects.pointset Reading in surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig.nofix Reading in defect segmentation /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.defect_labels #VMPC# mris_defects_pointset 146160 mris_defects_pointset done mri_label2vol --defects /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig.nofix /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.defect_labels /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/surface.defects.mgz 2000 1 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/surface.defects.mgz mri_label2vol supposed to be reproducible but seed not set Converting defects to volume: offset=2000, merge=1 MRIcopyHeader(): source has ctab Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/surface.defects.mgz mris_defects_pointset -s /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig.nofix -d /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.defect_labels -o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.defects.pointset Reading in surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig.nofix Reading in defect segmentation /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.defect_labels #VMPC# mris_defects_pointset 150440 mris_defects_pointset done Started at Sat Sep 2 20:01:15 EDT 2023 Ended at Sat Sep 2 20:01:18 EDT 2023 Defect2seg-Run-Time-Sec 3 Defect2seg-Run-Time-Min 0.06 Defect2seg-Run-Time-Hours 0.00 tkmeditfv sub-032336_troubleshoot2_dup brain.finalsurfs.mgz -defect defect2seg Done @#@FSTIME 2023:09:02:20:01:15 defect2seg N 2 e 3.70 S 0.25 U 3.43 P 99% M 218292 F 32 R 196742 W 0 c 30 w 217 I 5512 O 360 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:01:18 defect2seg N 2 1.00 1.02 1.00 mris_remesh --remesh --iters 3 --input /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig.premesh --output /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig iters = 3 standard remeshing without target adjusted l: 0.706847 remeshing to edge length 0.706847 with 3 iterations avg qual before : 0.893346 after: 0.97122 Removing intersections Remeshed surface quality stats nv0 = 112744 nv = 117995 1.04657 Area 235986 0.29934 0.03327 0.059583 0.4578 Corner 707958 60.00000 8.79527 13.380439 152.4250 Edge 353979 0.83936 0.08182 0.458593 1.2393 Hinge 353979 9.90855 10.43891 0.000000 126.8961 mris_remesh done @#@FSTIME 2023:09:02:20:01:18 mris_remesh N 7 e 19.24 S 0.35 U 18.87 P 99% M 626892 F 20 R 236027 W 0 c 84 w 18 I 3568 O 8304 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:01:38 mris_remesh N 7 1.00 1.02 1.00 mris_remesh --remesh --iters 3 --input /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig.premesh --output /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig iters = 3 standard remeshing without target adjusted l: 0.708633 remeshing to edge length 0.708633 with 3 iterations avg qual before : 0.892468 after: 0.971109 Removing intersections Remeshed surface quality stats nv0 = 116050 nv = 121299 1.04523 Area 242594 0.30093 0.03355 0.082640 0.4693 Corner 727782 60.00000 8.81355 19.211972 138.4648 Edge 363891 0.84161 0.08229 0.447569 1.2568 Hinge 363891 9.80389 10.24790 0.000000 120.6144 mris_remesh done @#@FSTIME 2023:09:02:20:01:38 mris_remesh N 7 e 18.76 S 0.30 U 18.45 P 99% M 643464 F 0 R 248407 W 0 c 90 w 1 I 0 O 8536 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:01:57 mris_remesh N 7 1.00 1.02 1.00 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours writing corrected surface to ../surf/lh.orig @#@FSTIME 2023:09:02:20:01:57 mris_remove_intersection N 2 e 1.76 S 0.10 U 1.64 P 99% M 292432 F 19 R 77143 W 0 c 10 w 18 I 3304 O 8304 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:01:58 mris_remove_intersection N 2 1.00 1.02 1.00 rm -f ../surf/lh.inflated /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours writing corrected surface to ../surf/rh.orig @#@FSTIME 2023:09:02:20:01:58 mris_remove_intersection N 2 e 1.78 S 0.09 U 1.68 P 99% M 298844 F 0 R 78872 W 0 c 12 w 1 I 0 O 8536 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:02:00 mris_remove_intersection N 2 1.00 1.02 1.00 rm -f ../surf/rh.inflated #-------------------------------------------- #@# AutoDetGWStats lh Sat Sep 2 20:02:00 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 226673 voxels (1.35%) border gray 284867 voxels (1.70%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (100.0): 99.2 +- 9.7 [70.0 --> 110.0] CCS GM (68.0) : 68.7 +- 11.5 [30.0 --> 110.0] white_mean = 99.2373 +/- 9.73201, gray_mean = 68.7147 +/- 11.5358 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=177 nbins=178 intensity peaks found at WM=105+-7.0, GM=65+-7.8 white_mode = 105, gray_mode = 65 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 53.5 (was 70.000000) setting MAX_BORDER_WHITE to 114.7 (was 105.000000) setting MIN_BORDER_WHITE to 65.0 (was 85.000000) setting MAX_CSF to 41.9 (was 40.000000) setting MAX_GRAY to 95.3 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 53.5 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 30.4 (was 40.000000) When placing the white surface white_border_hi = 114.732; white_border_low = 65; white_outside_low = 53.4642; white_inside_hi = 120; white_outside_hi = 114.732; When placing the pial surface pial_border_hi = 53.4642; pial_border_low = 30.3927; pial_outside_low = 10; pial_inside_hi = 95.268; pial_outside_hi = 47.6963; #VMPC# mris_autodet_gwstats VmPeak 236020 mris_autodet_gwstats done @#@FSTIME 2023:09:02:20:02:00 mris_autodet_gwstats N 8 e 3.49 S 0.05 U 3.42 P 99% M 210712 F 20 R 59038 W 0 c 20 w 17 I 3808 O 8 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:02:04 mris_autodet_gwstats N 8 1.00 1.02 1.00 #-------------------------------------------- #@# AutoDetGWStats rh Sat Sep 2 20:02:04 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 226673 voxels (1.35%) border gray 284867 voxels (1.70%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (100.0): 99.2 +- 9.7 [70.0 --> 110.0] CCS GM (68.0) : 68.7 +- 11.5 [30.0 --> 110.0] white_mean = 99.2373 +/- 9.73201, gray_mean = 68.7147 +/- 11.5358 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=177 nbins=178 intensity peaks found at WM=105+-6.1, GM=65+-7.8 white_mode = 105, gray_mode = 65 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 53.5 (was 70.000000) setting MAX_BORDER_WHITE to 114.7 (was 105.000000) setting MIN_BORDER_WHITE to 65.0 (was 85.000000) setting MAX_CSF to 41.9 (was 40.000000) setting MAX_GRAY to 95.3 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 53.5 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 30.4 (was 40.000000) When placing the white surface white_border_hi = 114.732; white_border_low = 65; white_outside_low = 53.4642; white_inside_hi = 120; white_outside_hi = 114.732; When placing the pial surface pial_border_hi = 53.4642; pial_border_low = 30.3927; pial_outside_low = 10; pial_inside_hi = 95.268; pial_outside_hi = 47.6963; #VMPC# mris_autodet_gwstats VmPeak 240544 mris_autodet_gwstats done @#@FSTIME 2023:09:02:20:02:04 mris_autodet_gwstats N 8 e 3.49 S 0.08 U 3.41 P 99% M 215188 F 0 R 60819 W 0 c 25 w 1 I 0 O 8 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:02:07 mris_autodet_gwstats N 8 1.00 1.02 1.00 #-------------------------------------------- #@# WhitePreAparc lh Sat Sep 2 20:02:07 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 7.2.0 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 Reading in input surface ../surf/lh.orig Smoothing surface with 5 iterations Area 235986 0.26249 0.06249 0.002971 0.5570 Corner 707958 60.00000 9.67203 10.036019 150.3790 Edge 353979 0.78258 0.11464 0.071311 1.3298 Hinge 353979 6.56787 6.56054 0.000074 127.7956 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 MRIfindBrightNonWM(): 12575 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 MRIcopyHeader(): source has ctab #FML# MRISripMidline(): nmarked=6777, nmarked2=12, nripped=6777 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 58998: xyz = (-29.5653,-16.5639,12.452) oxyz = (-29.5653,-16.5639,12.452) wxzy = (-29.5653,-16.5639,12.452) pxyz = (0,0,0) CBVO Creating mask 117995 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6777 #FML# MRISripMidline(): nmarked=6777, nmarked2=12, nripped=6777 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=2 had to be increased for 105 vertices, nripped=6777 mean border=76.4, 197 (197) missing vertices, mean dist 0.2 [0.9 (%34.8)->0.8 (%65.2))] %46 local maxima, %48 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1442 min Finding expansion regions mean absolute distance = 0.84 +- 1.06 3071 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=aiisc, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=4512557.0, rms=14.055 001: dt: 0.5000, sse=2435150.0, rms=10.206 (27.388%) 002: dt: 0.5000, sse=1445225.9, rms=7.719 (24.365%) 003: dt: 0.5000, sse=946461.9, rms=6.071 (21.352%) 004: dt: 0.5000, sse=702936.4, rms=5.093 (16.109%) 005: dt: 0.5000, sse=594806.3, rms=4.598 (9.728%) 006: dt: 0.5000, sse=556431.2, rms=4.399 (4.324%) 007: dt: 0.5000, sse=537343.7, rms=4.299 (2.280%) 008: dt: 0.5000, sse=520847.7, rms=4.203 (2.231%) rms = 4.1639/4.2026, sse=515830.9/520847.6, time step reduction 1 of 3 to 0.250 0 0 1 009: dt: 0.5000, sse=515830.9, rms=4.164 (0.921%) 010: dt: 0.2500, sse=297727.2, rms=2.729 (34.461%) 011: dt: 0.2500, sse=266181.2, rms=2.264 (17.046%) 012: dt: 0.2500, sse=236659.8, rms=2.166 (4.310%) 013: dt: 0.2500, sse=232162.6, rms=2.072 (4.365%) rms = 2.0306/2.0717, sse=226484.5/232162.6, time step reduction 2 of 3 to 0.125 0 0 1 014: dt: 0.2500, sse=226484.5, rms=2.031 (1.983%) 015: dt: 0.1250, sse=207126.8, rms=1.823 (10.245%) 016: dt: 0.1250, sse=202972.6, rms=1.767 (3.076%) rms = 1.7674/1.7665, sse=203236.5/202972.6, time step reduction 3 of 3 to 0.062 0 1 1 RMS increased, rejecting step 017: dt: 0.1250, sse=203236.5, rms=1.767 (-0.051%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6777 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6964, nmarked2=12, nripped=6964 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=1 had to be increased for 148 vertices, nripped=6964 mean border=80.9, 188 (83) missing vertices, mean dist -0.3 [0.4 (%75.3)->0.2 (%24.7))] %66 local maxima, %28 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0946 min Finding expansion regions mean absolute distance = 0.38 +- 0.63 2390 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=aiisc, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1022927.6, rms=6.182 018: dt: 0.5000, sse=577717.8, rms=4.258 (31.111%) rms = 4.3693/4.2585, sse=595943.1/577717.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=392797.5, rms=3.133 (26.425%) 020: dt: 0.2500, sse=302222.1, rms=2.363 (24.567%) 021: dt: 0.2500, sse=262973.6, rms=1.957 (17.201%) 022: dt: 0.2500, sse=248507.4, rms=1.822 (6.908%) 023: dt: 0.2500, sse=241706.2, rms=1.716 (5.813%) rms = 1.6848/1.7158, sse=240071.0/241706.2, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=240071.0, rms=1.685 (1.809%) 025: dt: 0.1250, sse=225238.8, rms=1.479 (12.205%) 026: dt: 0.1250, sse=222012.5, rms=1.425 (3.647%) rms = 1.4168/1.4252, sse=220667.3/222012.5, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=220667.3, rms=1.417 (0.592%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6964 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7060, nmarked2=12, nripped=7060 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 148 vertices, nripped=7060 mean border=84.4, 173 (48) missing vertices, mean dist -0.2 [0.3 (%77.7)->0.2 (%22.3))] %83 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0497 min Finding expansion regions mean absolute distance = 0.24 +- 0.35 1972 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=aiisc, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=604709.6, rms=4.420 028: dt: 0.5000, sse=531197.7, rms=3.975 (10.067%) rms = 4.1077/3.9751, sse=544057.5/531197.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 029: dt: 0.2500, sse=313918.3, rms=2.500 (37.111%) 030: dt: 0.2500, sse=256306.0, rms=1.909 (23.643%) 031: dt: 0.2500, sse=240396.0, rms=1.685 (11.718%) rms = 1.6469/1.6852, sse=235783.1/240396.0, time step reduction 2 of 3 to 0.125 0 0 1 032: dt: 0.2500, sse=235783.1, rms=1.647 (2.273%) 033: dt: 0.1250, sse=211904.2, rms=1.297 (21.235%) 034: dt: 0.1250, sse=206755.4, rms=1.217 (6.212%) rms = 1.2206/1.2166, sse=208080.7/206755.4, time step reduction 3 of 3 to 0.062 0 1 1 RMS increased, rejecting step 035: dt: 0.1250, sse=208080.7, rms=1.221 (-0.326%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7060 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7113, nmarked2=12, nripped=7113 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 159 vertices, nripped=7113 mean border=85.2, 204 (42) missing vertices, mean dist -0.0 [0.2 (%55.8)->0.2 (%44.2))] %87 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0316 min Finding expansion regions mean absolute distance = 0.17 +- 0.27 2049 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=aiisc, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=235774.8, rms=1.699 rms = 2.8069/1.6994, sse=352799.4/235774.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 036: dt: 0.2500, sse=197364.0, rms=1.075 (36.748%) rms = 1.1305/1.0749, sse=201204.5/197364.1, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 037: dt: 0.1250, sse=194953.9, rms=1.021 (5.000%) 038: dt: 0.1250, sse=191602.9, rms=0.931 (8.863%) rms = 0.9254/0.9307, sse=190852.6/191602.9, time step reduction 3 of 3 to 0.062 0 0 1 039: dt: 0.1250, sse=190852.6, rms=0.925 (0.564%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/lh.white.preaparc #ET# mris_place_surface 2.96 minutes #VMPC# mris_place_surfaces VmPeak 2016016 mris_place_surface done @#@FSTIME 2023:09:02:20:02:07 mris_place_surface N 18 e 183.36 S 0.64 U 182.69 P 99% M 1752172 F 13 R 459483 W 0 c 1056 w 11 I 2160 O 8304 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:05:11 mris_place_surface N 18 1.00 1.00 1.00 #-------------------------------------------- #@# WhitePreAparc rh Sat Sep 2 20:05:11 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 7.2.0 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 Reading in input surface ../surf/rh.orig Smoothing surface with 5 iterations Area 242594 0.26435 0.06249 0.003534 0.5715 Corner 727782 60.00000 9.64322 12.587699 150.1850 Edge 363891 0.78546 0.11417 0.078086 1.3786 Hinge 363891 6.51021 6.47088 0.000016 103.1572 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 MRIfindBrightNonWM(): 12575 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 MRIcopyHeader(): source has ctab removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6731, nmarked2=0, nripped=6731 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 60650: xyz = (33.9173,-14.6239,81.5941) oxyz = (33.9173,-14.6239,81.5941) wxzy = (33.9173,-14.6239,81.5941) pxyz = (0,0,0) CBVO Creating mask 121299 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6731 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6731, nmarked2=0, nripped=6731 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=2 had to be increased for 71 vertices, nripped=6731 mean border=76.8, 182 (182) missing vertices, mean dist 0.3 [0.8 (%33.7)->0.8 (%66.3))] %48 local maxima, %46 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1527 min Finding expansion regions mean absolute distance = 0.84 +- 1.03 2987 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=aiisc, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=4510790.0, rms=13.838 001: dt: 0.5000, sse=2458787.0, rms=10.097 (27.030%) 002: dt: 0.5000, sse=1457103.5, rms=7.630 (24.437%) 003: dt: 0.5000, sse=943239.8, rms=5.977 (21.662%) 004: dt: 0.5000, sse=688839.8, rms=4.954 (17.115%) 005: dt: 0.5000, sse=574416.3, rms=4.415 (10.890%) 006: dt: 0.5000, sse=526160.0, rms=4.160 (5.772%) 007: dt: 0.5000, sse=504491.1, rms=4.035 (3.003%) 008: dt: 0.5000, sse=496440.5, rms=3.972 (1.557%) rms = 3.9294/3.9721, sse=486771.8/496440.5, time step reduction 1 of 3 to 0.250 0 0 1 009: dt: 0.5000, sse=486771.8, rms=3.929 (1.074%) 010: dt: 0.2500, sse=285084.6, rms=2.544 (35.257%) 011: dt: 0.2500, sse=240237.0, rms=2.129 (16.320%) 012: dt: 0.2500, sse=230240.8, rms=2.016 (5.321%) 013: dt: 0.2500, sse=223403.3, rms=1.945 (3.515%) rms = 1.9030/1.9447, sse=223064.3/223403.3, time step reduction 2 of 3 to 0.125 0 0 1 014: dt: 0.2500, sse=223064.3, rms=1.903 (2.143%) 015: dt: 0.1250, sse=206212.2, rms=1.724 (9.405%) rms = 1.6800/1.7241, sse=203426.7/206212.2, time step reduction 3 of 3 to 0.062 0 0 1 016: dt: 0.1250, sse=203426.7, rms=1.680 (2.556%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6731 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6998, nmarked2=0, nripped=6998 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=1 had to be increased for 100 vertices, nripped=6998 mean border=81.4, 106 (27) missing vertices, mean dist -0.3 [0.4 (%76.3)->0.2 (%23.7))] %67 local maxima, %27 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1010 min Finding expansion regions mean absolute distance = 0.39 +- 0.62 2599 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=aiisc, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=1054425.0, rms=6.178 017: dt: 0.5000, sse=577183.6, rms=4.156 (32.721%) rms = 4.1909/4.1564, sse=579266.5/577183.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=402452.2, rms=3.111 (25.145%) 019: dt: 0.2500, sse=301583.3, rms=2.306 (25.893%) 020: dt: 0.2500, sse=259862.2, rms=1.859 (19.362%) 021: dt: 0.2500, sse=244176.7, rms=1.661 (10.646%) 022: dt: 0.2500, sse=236481.6, rms=1.551 (6.627%) 023: dt: 0.2500, sse=232626.5, rms=1.498 (3.457%) rms = 1.4975/1.4976, sse=232914.2/232626.5, time step reduction 2 of 3 to 0.125 0 1 1 024: dt: 0.2500, sse=232914.2, rms=1.497 (0.006%) 025: dt: 0.1250, sse=221114.8, rms=1.319 (11.932%) rms = 1.2854/1.3188, sse=219228.8/221114.8, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=219228.8, rms=1.285 (2.533%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6998 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7010, nmarked2=0, nripped=7010 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 115 vertices, nripped=7010 mean border=85.1, 97 (14) missing vertices, mean dist -0.2 [0.3 (%78.7)->0.2 (%21.3))] %85 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0533 min Finding expansion regions mean absolute distance = 0.24 +- 0.34 2144 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=aiisc, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=660396.0, rms=4.604 027: dt: 0.5000, sse=493922.2, rms=3.701 (19.626%) rms = 3.9730/3.7007, sse=535356.4/493922.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=301211.5, rms=2.319 (37.323%) 029: dt: 0.2500, sse=245639.1, rms=1.739 (25.013%) 030: dt: 0.2500, sse=229591.0, rms=1.522 (12.519%) rms = 1.4806/1.5216, sse=226561.5/229591.0, time step reduction 2 of 3 to 0.125 0 0 1 031: dt: 0.2500, sse=226561.5, rms=1.481 (2.694%) 032: dt: 0.1250, sse=210194.0, rms=1.214 (18.000%) 033: dt: 0.1250, sse=207382.7, rms=1.162 (4.265%) rms = 1.1669/1.1623, sse=207594.8/207382.7, time step reduction 3 of 3 to 0.062 0 1 1 RMS increased, rejecting step 034: dt: 0.1250, sse=207594.8, rms=1.167 (-0.396%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=7010 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=7047, nmarked2=0, nripped=7047 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 127 vertices, nripped=7047 mean border=85.9, 98 (7) missing vertices, mean dist -0.0 [0.2 (%57.0)->0.2 (%43.0))] %88 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0336 min Finding expansion regions mean absolute distance = 0.17 +- 0.25 2064 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=aiisc, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=235948.2, rms=1.647 rms = 2.6479/1.6471, sse=342825.8/235948.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=198270.8, rms=1.018 (38.221%) rms = 0.9862/1.0176, sse=197760.5/198270.8, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=197760.5, rms=0.986 (3.085%) 037: dt: 0.1250, sse=193927.1, rms=0.903 (8.469%) rms = 0.8751/0.9026, sse=192551.5/193927.1, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=192551.5, rms=0.875 (3.053%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/rh.white.preaparc #ET# mris_place_surface 2.96 minutes #VMPC# mris_place_surfaces VmPeak 2001216 mris_place_surface done @#@FSTIME 2023:09:02:20:05:11 mris_place_surface N 18 e 183.52 S 0.74 U 182.77 P 99% M 1737352 F 0 R 456603 W 0 c 832 w 1 I 0 O 8536 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:08:14 mris_place_surface N 18 1.00 1.00 1.00 #-------------------------------------------- #@# CortexLabel lh Sat Sep 2 20:08:14 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 0 ../label/lh.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 4 non-cortical segments detected only using segment with 8425 vertices erasing segment 1 (vno[0] = 38663) erasing segment 2 (vno[0] = 73444) erasing segment 3 (vno[0] = 81424) @#@FSTIME 2023:09:02:20:08:14 mri_label2label N 5 e 10.82 S 0.10 U 10.70 P 99% M 291984 F 10 R 86253 W 0 c 45 w 7 I 1488 O 9480 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:08:25 mri_label2label N 5 1.00 1.00 1.00 #-------------------------------------------- #@# CortexLabel+HipAmyg lh Sat Sep 2 20:08:25 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 4 non-cortical segments detected only using segment with 6677 vertices erasing segment 1 (vno[0] = 38663) erasing segment 2 (vno[0] = 73444) erasing segment 3 (vno[0] = 81424) @#@FSTIME 2023:09:02:20:08:25 mri_label2label N 5 e 10.86 S 0.11 U 10.74 P 99% M 291856 F 0 R 86279 W 0 c 65 w 1 I 0 O 9616 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:08:36 mri_label2label N 5 1.00 1.00 1.00 #-------------------------------------------- #@# CortexLabel rh Sat Sep 2 20:08:36 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 0 ../label/rh.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 8 non-cortical segments detected only using segment with 8254 vertices erasing segment 1 (vno[0] = 42317) erasing segment 2 (vno[0] = 74130) erasing segment 3 (vno[0] = 74167) erasing segment 4 (vno[0] = 75027) erasing segment 5 (vno[0] = 75694) erasing segment 6 (vno[0] = 76971) erasing segment 7 (vno[0] = 100089) @#@FSTIME 2023:09:02:20:08:36 mri_label2label N 5 e 10.62 S 0.12 U 10.49 P 99% M 313056 F 0 R 94018 W 0 c 75 w 1 I 0 O 9552 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:08:47 mri_label2label N 5 1.00 1.00 1.00 #-------------------------------------------- #@# CortexLabel+HipAmyg rh Sat Sep 2 20:08:47 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 7 non-cortical segments detected only using segment with 6616 vertices erasing segment 1 (vno[0] = 42317) erasing segment 2 (vno[0] = 74130) erasing segment 3 (vno[0] = 74149) erasing segment 4 (vno[0] = 75694) erasing segment 5 (vno[0] = 76971) erasing segment 6 (vno[0] = 100089) @#@FSTIME 2023:09:02:20:08:47 mri_label2label N 5 e 10.62 S 0.10 U 10.51 P 99% M 308960 F 0 R 90945 W 0 c 79 w 1 I 0 O 9688 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:08:57 mri_label2label N 5 1.00 1.00 1.00 #-------------------------------------------- #@# Smooth2 lh Sat Sep 2 20:08:57 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2023:09:02:20:08:57 mris_smooth N 7 e 2.10 S 0.07 U 2.02 P 99% M 182516 F 0 R 54134 W 0 c 5 w 1 I 0 O 8304 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:08:59 mris_smooth N 7 1.00 1.00 1.00 #-------------------------------------------- #@# Smooth2 rh Sat Sep 2 20:08:59 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2023:09:02:20:08:59 mris_smooth N 7 e 2.17 S 0.07 U 2.10 P 99% M 187468 F 0 R 56213 W 0 c 9 w 1 I 0 O 8536 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:09:02 mris_smooth N 7 1.00 1.00 1.00 #-------------------------------------------- #@# Inflation2 lh Sat Sep 2 20:09:02 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 46.1 mm, total surface area = 70818 mm^2 step 000: RMS=0.174 (target=0.015) step 005: RMS=0.114 (target=0.015) step 010: RMS=0.086 (target=0.015) step 015: RMS=0.070 (target=0.015) step 020: RMS=0.058 (target=0.015) step 025: RMS=0.047 (target=0.015) step 030: RMS=0.038 (target=0.015) step 035: RMS=0.032 (target=0.015) step 040: RMS=0.027 (target=0.015) step 045: RMS=0.024 (target=0.015) step 050: RMS=0.022 (target=0.015) step 055: RMS=0.020 (target=0.015) step 060: RMS=0.019 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.2 minutes mris_inflate utimesec 14.341406 mris_inflate stimesec 0.611889 mris_inflate ru_maxrss 182536 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 463652 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 9232 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 117 @#@FSTIME 2023:09:02:20:09:02 mris_inflate N 2 e 14.96 S 0.61 U 14.34 P 99% M 182536 F 0 R 463657 W 0 c 117 w 1 I 0 O 9232 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:09:17 mris_inflate N 2 1.00 1.00 1.00 #-------------------------------------------- #@# Inflation2 rh Sat Sep 2 20:09:17 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 47.0 mm, total surface area = 73085 mm^2 step 000: RMS=0.172 (target=0.015) step 005: RMS=0.114 (target=0.015) step 010: RMS=0.084 (target=0.015) step 015: RMS=0.069 (target=0.015) step 020: RMS=0.057 (target=0.015) step 025: RMS=0.046 (target=0.015) step 030: RMS=0.038 (target=0.015) step 035: RMS=0.031 (target=0.015) step 040: RMS=0.026 (target=0.015) step 045: RMS=0.023 (target=0.015) step 050: RMS=0.021 (target=0.015) step 055: RMS=0.019 (target=0.015) step 060: RMS=0.018 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.2 minutes mris_inflate utimesec 14.649819 mris_inflate stimesec 0.067989 mris_inflate ru_maxrss 188396 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 50188 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 9488 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 75 @#@FSTIME 2023:09:02:20:09:17 mris_inflate N 2 e 14.73 S 0.07 U 14.64 P 99% M 188524 F 0 R 50193 W 0 c 75 w 1 I 0 O 9488 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:09:31 mris_inflate N 2 1.00 1.00 1.00 #-------------------------------------------- #@# Curv .H and .K lh Sat Sep 2 20:09:31 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 5.281*4pi (66.360) --> -4 handles ICI = 132.7, FI = 1376.6, variation=21697.015 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. @#@FSTIME 2023:09:02:20:09:31 mris_curvature N 4 e 1.13 S 0.04 U 1.08 P 99% M 136020 F 5 R 36431 W 0 c 8 w 4 I 608 O 1856 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:09:32 mris_curvature N 4 1.00 1.00 1.00 rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 199 vertices thresholded to be in k1 ~ [-0.21 0.27], k2 ~ [-0.12 0.06] total integrated curvature = 0.663*4pi (8.335) --> 0 handles ICI = 1.4, FI = 8.7, variation=148.679 123 vertices thresholded to be in [-0.01 0.02] writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 145 vertices thresholded to be in [-0.15 0.13] done. writing mean curvature to ./lh.inflated.H...curvature mean = -0.018, std = 0.023 done. @#@FSTIME 2023:09:02:20:09:32 mris_curvature N 12 e 32.35 S 0.09 U 32.25 P 99% M 320476 F 0 R 82604 W 0 c 166 w 1 I 0 O 1856 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:10:05 mris_curvature N 12 1.00 1.00 1.00 #-------------------------------------------- #@# Curv .H and .K rh Sat Sep 2 20:10:05 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 11.903*4pi (149.575) --> -11 handles ICI = 136.6, FI = 1390.0, variation=21882.452 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. @#@FSTIME 2023:09:02:20:10:05 mris_curvature N 4 e 1.15 S 0.05 U 1.10 P 99% M 139600 F 0 R 37971 W 0 c 8 w 1 I 0 O 1904 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:10:06 mris_curvature N 4 1.00 1.00 1.00 rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 213 vertices thresholded to be in k1 ~ [-0.26 0.25], k2 ~ [-0.16 0.06] total integrated curvature = 0.653*4pi (8.212) --> 0 handles ICI = 1.4, FI = 9.1, variation=150.954 126 vertices thresholded to be in [-0.01 0.03] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 158 vertices thresholded to be in [-0.16 0.13] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.018, std = 0.023 done. @#@FSTIME 2023:09:02:20:10:06 mris_curvature N 12 e 33.53 S 0.13 U 33.39 P 99% M 329176 F 0 R 85479 W 0 c 207 w 1 I 0 O 1904 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:10:40 mris_curvature N 12 1.00 1.00 1.00 #-------------------------------------------- #@# Sphere lh Sat Sep 2 20:10:40 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.321... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=aiisc, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %44.44 pass 1: epoch 2 of 3 starting distance error %19.59 unfolding complete - removing small folds... starting distance error %19.48 removing remaining folds... final distance error %19.52 MRISunfold() return, current seed 1234 -01: dt=0.0000, 7 negative triangles VmPeak 507816 122: dt=0.9900, 7 negative triangles 123: dt=0.9900, 2 negative triangles 124: dt=0.9900, 2 negative triangles 125: dt=0.9900, 2 negative triangles 126: dt=0.9900, 4 negative triangles 127: dt=0.9900, 2 negative triangles 128: dt=0.9900, 1 negative triangles 129: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.0778 hours FSRUNTIME@ mris_sphere 0.0778 hours 1 threads #VMPC# mris_sphere VmPeak 507816 mris_sphere done @#@FSTIME 2023:09:02:20:10:40 mris_sphere N 4 e 279.94 S 10.26 U 269.65 P 99% M 243840 F 0 R 8010856 W 0 c 1599 w 1 I 0 O 8304 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:15:20 mris_sphere N 4 1.00 1.00 1.00 #-------------------------------------------- #@# Sphere rh Sat Sep 2 20:15:20 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.318... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=aiisc, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %44.32 pass 1: epoch 2 of 3 starting distance error %19.33 unfolding complete - removing small folds... starting distance error %19.33 removing remaining folds... final distance error %19.33 MRISunfold() return, current seed 1234 -01: dt=0.0000, 124 negative triangles VmPeak 514384 058: dt=0.9900, 124 negative triangles 059: dt=0.9900, 37 negative triangles 060: dt=0.9900, 26 negative triangles 061: dt=0.9900, 25 negative triangles 062: dt=0.9900, 22 negative triangles 063: dt=0.9900, 22 negative triangles 064: dt=0.9900, 18 negative triangles 065: dt=0.9900, 15 negative triangles 066: dt=0.9900, 15 negative triangles 067: dt=0.9900, 17 negative triangles 068: dt=0.9900, 15 negative triangles 069: dt=0.9900, 16 negative triangles 070: dt=0.9900, 19 negative triangles 071: dt=0.9900, 17 negative triangles 072: dt=0.9900, 14 negative triangles 073: dt=0.9900, 11 negative triangles 074: dt=0.9900, 10 negative triangles 075: dt=0.9900, 7 negative triangles 076: dt=0.9900, 7 negative triangles 077: dt=0.9900, 4 negative triangles 078: dt=0.9900, 4 negative triangles 079: dt=0.9900, 4 negative triangles 080: dt=0.9900, 3 negative triangles 081: dt=0.9900, 2 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.0553 hours FSRUNTIME@ mris_sphere 0.0553 hours 1 threads #VMPC# mris_sphere VmPeak 514384 mris_sphere done @#@FSTIME 2023:09:02:20:15:20 mris_sphere N 4 e 199.17 S 5.20 U 193.95 P 99% M 250376 F 0 R 4089211 W 0 c 1125 w 1 I 0 O 8536 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:18:39 mris_sphere N 4 1.00 1.00 1.00 #-------------------------------------------- #@# Surf Reg lh Sat Sep 2 20:18:39 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_register -curv ../surf/lh.sphere /home/aiisc/Downloads/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts cmdline mris_register -curv ../surf/lh.sphere /home/aiisc/Downloads/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.2.0 7.2.0 reading surface from ../surf/lh.sphere... reading template parameterization from /home/aiisc/Downloads/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=aiisc, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=aiisc, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=aiisc, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = -0.000, std = 5.154 curvature mean = 0.036, std = 0.820 curvature mean = 0.016, std = 0.868 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (3.50, -5.00, -14.00) sse = 204107.6, elapsed since starting=0.2920 min MRISrigidBodyAlignGlobal() done 0.29 min curvature mean = 0.007, std = 0.841 curvature mean = 0.007, std = 0.950 curvature mean = 0.003, std = 0.852 curvature mean = 0.003, std = 0.980 curvature mean = 0.002, std = 0.855 curvature mean = 0.000, std = 0.992 2 Reading smoothwm curvature mean = -0.021, std = 0.288 curvature mean = 0.040, std = 0.249 curvature mean = 0.066, std = 0.357 curvature mean = 0.038, std = 0.307 curvature mean = 0.032, std = 0.558 curvature mean = 0.037, std = 0.334 curvature mean = 0.016, std = 0.699 curvature mean = 0.037, std = 0.346 curvature mean = 0.005, std = 0.807 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... -01: dt=0.0000, 0 negative triangles VmPeak 497996 registration took 0.09 hours #VMPC# mris_register VmPeak 497996 FSRUNTIME@ mris_register 0.0870 hours 1 threads @#@FSTIME 2023:09:02:20:18:39 mris_register N 4 e 313.24 S 8.04 U 305.17 P 99% M 234248 F 16 R 6542233 W 0 c 1758 w 21 I 7552 O 8304 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:23:52 mris_register N 4 1.00 1.00 1.00 ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Sat Sep 2 20:23:52 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_register -curv ../surf/rh.sphere /home/aiisc/Downloads/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts cmdline mris_register -curv ../surf/rh.sphere /home/aiisc/Downloads/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.2.0 7.2.0 reading surface from ../surf/rh.sphere... reading template parameterization from /home/aiisc/Downloads/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=aiisc, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=aiisc, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host=aiisc, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = -0.000, std = 5.075 curvature mean = 0.013, std = 0.809 curvature mean = 0.020, std = 0.860 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (5.00, -5.00, -10.00) sse = 210174.8, elapsed since starting=0.3126 min MRISrigidBodyAlignGlobal() done 0.31 min curvature mean = 0.001, std = 0.830 curvature mean = 0.008, std = 0.947 curvature mean = -0.001, std = 0.840 curvature mean = 0.003, std = 0.979 curvature mean = -0.003, std = 0.842 curvature mean = 0.001, std = 0.992 2 Reading smoothwm curvature mean = -0.019, std = 0.278 curvature mean = 0.034, std = 0.244 curvature mean = 0.070, std = 0.360 curvature mean = 0.033, std = 0.300 curvature mean = 0.030, std = 0.573 curvature mean = 0.032, std = 0.327 curvature mean = 0.014, std = 0.715 curvature mean = 0.031, std = 0.340 curvature mean = 0.003, std = 0.821 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... -01: dt=0.0000, 0 negative triangles VmPeak 504100 registration took 0.09 hours #VMPC# mris_register VmPeak 504100 FSRUNTIME@ mris_register 0.0873 hours 1 threads @#@FSTIME 2023:09:02:20:23:52 mris_register N 4 e 314.29 S 8.21 U 305.97 P 99% M 240368 F 0 R 6345033 W 0 c 4004 w 12 I 5584 O 8536 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:29:06 mris_register N 4 1.07 1.03 1.01 ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Sat Sep 2 20:29:06 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white @#@FSTIME 2023:09:02:20:29:06 mris_jacobian N 3 e 0.73 S 0.07 U 0.65 P 99% M 181864 F 3 R 54100 W 0 c 5 w 3 I 624 O 928 L 1.07 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:29:07 mris_jacobian N 3 1.07 1.03 1.01 #-------------------------------------------- #@# Jacobian white rh Sat Sep 2 20:29:07 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white @#@FSTIME 2023:09:02:20:29:07 mris_jacobian N 3 e 0.75 S 0.06 U 0.69 P 100% M 186812 F 0 R 56161 W 0 c 6 w 1 I 0 O 952 L 1.07 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:29:08 mris_jacobian N 3 1.07 1.03 1.01 #-------------------------------------------- #@# AvgCurv lh Sat Sep 2 20:29:08 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mrisp_paint -a 5 /home/aiisc/Downloads/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /home/aiisc/Downloads/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... @#@FSTIME 2023:09:02:20:29:08 mrisp_paint N 5 e 0.59 S 0.04 U 0.54 P 98% M 140996 F 6 R 38217 W 0 c 7 w 6 I 1096 O 928 L 1.07 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:29:09 mrisp_paint N 5 1.07 1.03 1.01 #-------------------------------------------- #@# AvgCurv rh Sat Sep 2 20:29:09 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mrisp_paint -a 5 /home/aiisc/Downloads/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /home/aiisc/Downloads/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... @#@FSTIME 2023:09:02:20:29:09 mrisp_paint N 5 e 0.60 S 0.05 U 0.54 P 99% M 144600 F 0 R 39241 W 0 c 4 w 1 I 0 O 952 L 1.07 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:29:09 mrisp_paint N 5 1.06 1.03 1.01 #----------------------------------------- #@# Cortical Parc lh Sat Sep 2 20:29:09 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-032336_troubleshoot2_dup lh ../surf/lh.sphere.reg /home/aiisc/Downloads/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /home/aiisc/Downloads/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1032 labels changed using aseg relabeling using gibbs priors... 000: 2801 changed, 117995 examined... 001: 674 changed, 12012 examined... 002: 151 changed, 3854 examined... 003: 51 changed, 952 examined... 004: 16 changed, 324 examined... 005: 6 changed, 93 examined... 006: 2 changed, 39 examined... 007: 0 changed, 15 examined... 273 labels changed using aseg 000: 89 total segments, 50 labels (151 vertices) changed 001: 42 total segments, 2 labels (3 vertices) changed 002: 40 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1593 vertices marked for relabeling... 1593 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 7 seconds. @#@FSTIME 2023:09:02:20:29:09 mris_ca_label N 11 e 7.20 S 0.49 U 6.70 P 99% M 1016376 F 9 R 368049 W 0 c 45 w 10 I 64288 O 1848 L 1.06 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:29:16 mris_ca_label N 11 1.06 1.03 1.01 #----------------------------------------- #@# Cortical Parc rh Sat Sep 2 20:29:16 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-032336_troubleshoot2_dup rh ../surf/rh.sphere.reg /home/aiisc/Downloads/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /home/aiisc/Downloads/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 906 labels changed using aseg relabeling using gibbs priors... 000: 2652 changed, 121299 examined... 001: 622 changed, 11384 examined... 002: 133 changed, 3583 examined... 003: 30 changed, 825 examined... 004: 24 changed, 187 examined... 005: 7 changed, 155 examined... 006: 6 changed, 45 examined... 007: 2 changed, 39 examined... 008: 0 changed, 12 examined... 236 labels changed using aseg 000: 96 total segments, 45 labels (146 vertices) changed 001: 51 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 3 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1446 vertices marked for relabeling... 1446 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 7 seconds. @#@FSTIME 2023:09:02:20:29:16 mris_ca_label N 11 e 7.08 S 0.45 U 6.63 P 99% M 1059152 F 0 R 347480 W 0 c 48 w 3 I 36352 O 1904 L 1.06 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:29:23 mris_ca_label N 11 1.05 1.03 1.01 #-------------------------------------------- #@# WhiteSurfs lh Sat Sep 2 20:29:24 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot 7.2.0 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 235986 0.33241 0.12507 0.001025 1.7610 Corner 707958 60.00000 15.28339 0.245730 178.6694 Edge 353979 0.88852 0.20913 0.019483 3.1269 Hinge 353979 11.72971 12.42492 0.000096 179.9756 Reading in aparc ../label/lh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 MRIfindBrightNonWM(): 12575 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf Ripping BG MRIcopyHeader(): source has ctab MRISripBasalGanglia(): -2 2 0.5 ripped 389 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 58998: xyz = (-29.5558,-16.5144,12.5023) oxyz = (-29.5558,-16.5144,12.5023) wxzy = (-29.5558,-16.5144,12.5023) pxyz = (0,0,0) CBVO Creating mask 117995 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=2 had to be increased for 195 vertices, nripped=9111 mean border=76.3, 182 (182) missing vertices, mean dist 0.3 [2.0 (%11.0)->0.6 (%89.0))] %43 local maxima, %49 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1317 min Finding expansion regions mean absolute distance = 0.74 +- 0.99 2807 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=aiisc, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=2384218.2, rms=10.096 001: dt: 0.5000, sse=785355.3, rms=5.325 (47.260%) 002: dt: 0.5000, sse=505324.4, rms=3.973 (25.382%) rms = 3.9366/3.9733, sse=498360.5/505324.4, time step reduction 1 of 3 to 0.250 0 0 1 003: dt: 0.5000, sse=498360.4, rms=3.937 (0.923%) 004: dt: 0.2500, sse=273559.0, rms=2.234 (43.251%) 005: dt: 0.2500, sse=242226.5, rms=1.899 (14.987%) 006: dt: 0.2500, sse=236175.0, rms=1.816 (4.366%) 007: dt: 0.2500, sse=234442.2, rms=1.758 (3.224%) rms = 1.7340/1.7577, sse=232022.5/234442.2, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=232022.5, rms=1.734 (1.349%) 009: dt: 0.1250, sse=218946.3, rms=1.563 (9.868%) rms = 1.5407/1.5629, sse=216908.4/218946.3, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=216908.4, rms=1.541 (1.421%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=1 had to be increased for 101 vertices, nripped=9111 mean border=80.7, 151 (72) missing vertices, mean dist -0.3 [0.4 (%73.5)->0.2 (%26.5))] %65 local maxima, %27 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0916 min Finding expansion regions mean absolute distance = 0.37 +- 0.63 2081 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=aiisc, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=912858.5, rms=5.826 011: dt: 0.5000, sse=531409.6, rms=4.014 (31.103%) rms = 4.1529/4.0143, sse=548005.5/531409.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=355402.2, rms=2.875 (28.380%) 013: dt: 0.2500, sse=267869.1, rms=2.067 (28.091%) 014: dt: 0.2500, sse=247204.6, rms=1.714 (17.094%) 015: dt: 0.2500, sse=230525.8, rms=1.590 (7.214%) 016: dt: 0.2500, sse=226132.9, rms=1.530 (3.778%) rms = 1.5298/1.5303, sse=226813.4/226132.9, time step reduction 2 of 3 to 0.125 0 1 1 017: dt: 0.2500, sse=226813.4, rms=1.530 (0.028%) 018: dt: 0.1250, sse=214501.4, rms=1.328 (13.174%) rms = 1.2969/1.3283, sse=216955.1/214501.4, time step reduction 3 of 3 to 0.062 0 1 1 019: dt: 0.1250, sse=216955.1, rms=1.297 (2.366%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 130 vertices, nripped=9111 mean border=84.3, 135 (50) missing vertices, mean dist -0.2 [0.3 (%78.2)->0.2 (%21.8))] %82 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0492 min Finding expansion regions mean absolute distance = 0.24 +- 0.34 1866 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=aiisc, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=602102.2, rms=4.429 020: dt: 0.5000, sse=518072.6, rms=3.930 (11.267%) rms = 4.0500/3.9299, sse=529840.8/518072.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 021: dt: 0.2500, sse=309062.6, rms=2.461 (37.372%) 022: dt: 0.2500, sse=250371.3, rms=1.856 (24.598%) 023: dt: 0.2500, sse=232825.7, rms=1.642 (11.499%) rms = 1.5951/1.6424, sse=229104.8/232825.7, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=229104.8, rms=1.595 (2.884%) 025: dt: 0.1250, sse=215653.0, rms=1.273 (20.185%) 026: dt: 0.1250, sse=205627.1, rms=1.200 (5.719%) rms = 1.2002/1.2003, sse=206553.8/205627.1, time step reduction 3 of 3 to 0.062 0 1 1 027: dt: 0.1250, sse=206553.8, rms=1.200 (0.006%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 126 vertices, nripped=9111 mean border=85.0, 152 (37) missing vertices, mean dist -0.0 [0.2 (%56.0)->0.2 (%44.0))] %86 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0312 min Finding expansion regions mean absolute distance = 0.17 +- 0.27 1858 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=aiisc, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=235649.1, rms=1.698 rms = 2.7539/1.6984, sse=350098.8/235649.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=197208.8, rms=1.048 (38.275%) rms = 1.0947/1.0483, sse=201098.2/197208.8, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 029: dt: 0.1250, sse=194629.7, rms=0.989 (5.669%) 030: dt: 0.1250, sse=191275.6, rms=0.878 (11.257%) rms = 0.8693/0.8776, sse=190749.5/191275.6, time step reduction 3 of 3 to 0.062 0 0 1 031: dt: 0.1250, sse=190749.5, rms=0.869 (0.940%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/lh.white #ET# mris_place_surface 2.41 minutes #VMPC# mris_place_surfaces VmPeak 1902124 mris_place_surface done @#@FSTIME 2023:09:02:20:29:24 mris_place_surface N 25 e 150.68 S 0.67 U 149.99 P 99% M 1638420 F 3 R 444295 W 0 c 952 w 3 I 368 O 8304 L 1.05 1.03 1.01 @#@FSLOADPOST 2023:09:02:20:31:54 mris_place_surface N 25 1.00 1.02 1.00 #-------------------------------------------- #@# WhiteSurfs rh Sat Sep 2 20:31:54 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot 7.2.0 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 242594 0.33317 0.12296 0.001501 1.8182 Corner 727782 60.00000 14.91911 0.705602 178.3360 Edge 363891 0.88869 0.20425 0.014419 3.3714 Hinge 363891 11.51672 12.06831 0.000028 179.9980 Reading in aparc ../label/rh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 MRIfindBrightNonWM(): 12575 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf Ripping BG MRIcopyHeader(): source has ctab MRISripBasalGanglia(): -2 2 0.5 ripped 319 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 60650: xyz = (34.0762,-14.2937,81.7323) oxyz = (34.0762,-14.2937,81.7323) wxzy = (34.0762,-14.2937,81.7323) pxyz = (0,0,0) CBVO Creating mask 121299 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=2 had to be increased for 131 vertices, nripped=8880 mean border=76.7, 235 (235) missing vertices, mean dist 0.4 [1.9 (%10.0)->0.6 (%90.0))] %45 local maxima, %48 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1397 min Finding expansion regions mean absolute distance = 0.75 +- 0.95 2562 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=aiisc, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=2625521.8, rms=10.458 001: dt: 0.5000, sse=871265.7, rms=5.605 (46.405%) 002: dt: 0.5000, sse=514746.8, rms=3.946 (29.606%) 003: dt: 0.5000, sse=485010.6, rms=3.772 (4.411%) 004: dt: 0.5000, sse=450946.8, rms=3.562 (5.559%) rms = 3.7376/3.5619, sse=480772.0/450946.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 005: dt: 0.2500, sse=295828.1, rms=2.386 (33.009%) 006: dt: 0.2500, sse=248061.4, rms=1.882 (21.124%) 007: dt: 0.2500, sse=231446.7, rms=1.670 (11.268%) rms = 1.6288/1.6700, sse=228742.5/231446.7, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=228742.5, rms=1.629 (2.469%) 009: dt: 0.1250, sse=219273.7, rms=1.487 (8.697%) rms = 1.4577/1.4871, sse=217354.4/219273.7, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=217354.4, rms=1.458 (1.981%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=1 had to be increased for 87 vertices, nripped=8880 mean border=81.2, 142 (82) missing vertices, mean dist -0.3 [0.4 (%74.4)->0.2 (%25.6))] %65 local maxima, %27 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0985 min Finding expansion regions mean absolute distance = 0.38 +- 0.62 2199 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=aiisc, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=950500.4, rms=5.855 011: dt: 0.5000, sse=539453.6, rms=3.983 (31.981%) rms = 4.0192/3.9826, sse=541880.1/539453.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=374404.8, rms=2.927 (26.494%) 013: dt: 0.2500, sse=279692.7, rms=2.094 (28.483%) 014: dt: 0.2500, sse=242239.6, rms=1.645 (21.449%) 015: dt: 0.2500, sse=230083.2, rms=1.471 (10.555%) 016: dt: 0.2500, sse=225966.3, rms=1.405 (4.506%) rms = 1.3756/1.4047, sse=224013.2/225966.3, time step reduction 2 of 3 to 0.125 0 0 1 017: dt: 0.2500, sse=224013.2, rms=1.376 (2.074%) 018: dt: 0.1250, sse=215016.6, rms=1.218 (11.436%) rms = 1.1978/1.2182, sse=213947.2/215016.6, time step reduction 3 of 3 to 0.062 0 0 1 019: dt: 0.1250, sse=213947.2, rms=1.198 (1.679%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 117 vertices, nripped=8880 mean border=85.0, 135 (65) missing vertices, mean dist -0.2 [0.3 (%79.3)->0.2 (%20.7))] %83 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0530 min Finding expansion regions mean absolute distance = 0.25 +- 0.34 2085 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=aiisc, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=662684.8, rms=4.657 020: dt: 0.5000, sse=490975.1, rms=3.675 (21.083%) rms = 3.9172/3.6754, sse=523967.2/490975.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 021: dt: 0.2500, sse=301300.1, rms=2.295 (37.556%) 022: dt: 0.2500, sse=244398.2, rms=1.673 (27.116%) 023: dt: 0.2500, sse=227693.4, rms=1.453 (13.117%) 024: dt: 0.2500, sse=224249.2, rms=1.400 (3.656%) rms = 1.3876/1.4002, sse=223362.7/224249.1, time step reduction 2 of 3 to 0.125 0 0 1 025: dt: 0.2500, sse=223362.7, rms=1.388 (0.895%) 026: dt: 0.1250, sse=209417.7, rms=1.145 (17.473%) rms = 1.1061/1.1452, sse=207256.3/209417.7, time step reduction 3 of 3 to 0.062 0 0 1 027: dt: 0.1250, sse=207256.3, rms=1.106 (3.416%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 114.7320100; border_low = 65.0000000; outside_low = 53.4642260; outside_hi = 114.7320100; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 118 vertices, nripped=8880 mean border=85.8, 143 (56) missing vertices, mean dist -0.0 [0.2 (%57.2)->0.2 (%42.8))] %87 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0338 min Finding expansion regions mean absolute distance = 0.17 +- 0.25 1872 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=aiisc, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=235707.9, rms=1.617 rms = 2.5865/1.6168, sse=341227.4/235707.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 028: dt: 0.2500, sse=199831.1, rms=0.976 (39.630%) rms = 0.9742/0.9760, sse=201983.0/199831.1, time step reduction 2 of 3 to 0.125 0 1 1 029: dt: 0.2500, sse=201983.0, rms=0.974 (0.188%) 030: dt: 0.1250, sse=195817.8, rms=0.859 (11.838%) rms = 0.8339/0.8589, sse=196057.5/195817.8, time step reduction 3 of 3 to 0.062 0 1 1 031: dt: 0.1250, sse=196057.5, rms=0.834 (2.905%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/rh.white #ET# mris_place_surface 2.50 minutes #VMPC# mris_place_surfaces VmPeak 1902724 mris_place_surface done @#@FSTIME 2023:09:02:20:31:54 mris_place_surface N 25 e 155.94 S 0.51 U 155.41 P 99% M 1639012 F 0 R 445361 W 0 c 901 w 1 I 0 O 8536 L 1.00 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:34:30 mris_place_surface N 25 1.02 1.03 1.00 #-------------------------------------------- #@# T1PialSurf lh Sat Sep 2 20:34:30 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white 7.2.0 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white Reading in input surface ../surf/lh.white Not smoothing input surface Area 235986 0.33424 0.13540 0.001257 1.9680 Corner 707958 60.00000 16.43963 0.296928 178.5080 Edge 353979 0.89202 0.22233 0.021368 3.0004 Hinge 353979 11.79655 12.62515 0.000096 179.9521 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 MRIfindBrightNonWM(): 12575 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 62.8303 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label INFO: rip surface needed but not specified, so using input surface Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRIcopyHeader(): source has ctab MRISripSegs(): -2 2 0.5 ripped 0 vertex 58998: xyz = (-29.5256,-16.5541,12.4888) oxyz = (-29.5256,-16.5541,12.4888) wxzy = (-29.5256,-16.5541,12.4888) pxyz = (-29.5256,-16.5541,12.4888) CBVO Creating mask 117995 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=2 had to be increased for 255 vertices, nripped=7127 mean border=49.1, 226 (226) missing vertices, mean dist 1.7 [0.2 (%0.0)->2.2 (%100.0))] %13 local maxima, %57 large gradients and %24 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0966 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=aiisc, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=29556706.0, rms=36.444 001: dt: 0.5000, sse=19508006.0, rms=29.565 (18.877%) 002: dt: 0.5000, sse=12944653.0, rms=24.030 (18.721%) 003: dt: 0.5000, sse=9264176.0, rms=20.274 (15.630%) 004: dt: 0.5000, sse=7135681.5, rms=17.741 (12.492%) 005: dt: 0.5000, sse=5717418.0, rms=15.829 (10.777%) 006: dt: 0.5000, sse=4413422.0, rms=13.840 (12.566%) 007: dt: 0.5000, sse=3217478.8, rms=11.722 (15.302%) 008: dt: 0.5000, sse=2257641.0, rms=9.692 (17.317%) 009: dt: 0.5000, sse=1681169.9, rms=8.235 (15.035%) 010: dt: 0.5000, sse=1393850.2, rms=7.400 (10.134%) 011: dt: 0.5000, sse=1320391.5, rms=7.169 (3.124%) 012: dt: 0.5000, sse=1250619.4, rms=6.942 (3.169%) rms = 6.9407/6.9421, sse=1251251.1/1250619.4, time step reduction 1 of 3 to 0.250 0 1 1 013: dt: 0.5000, sse=1251251.1, rms=6.941 (0.020%) 014: dt: 0.2500, sse=846143.7, rms=5.446 (21.532%) 015: dt: 0.2500, sse=769496.1, rms=5.116 (6.064%) rms = 5.1170/5.1160, sse=770393.6/769496.2, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 016: dt: 0.1250, sse=713208.9, rms=4.859 (5.032%) 017: dt: 0.1250, sse=637443.0, rms=4.488 (7.631%) 018: dt: 0.1250, sse=616173.6, rms=4.378 (2.453%) rms = 4.3429/4.3777, sse=609661.5/616173.6, time step reduction 3 of 3 to 0.062 0 0 1 019: dt: 0.1250, sse=609661.5, rms=4.343 (0.795%) maximum number of reductions reached, breaking from loop positioning took 1.1 minutes Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=1 had to be increased for 3483 vertices, nripped=7127 mean border=47.0, 850 (18) missing vertices, mean dist 0.1 [0.1 (%57.5)->0.4 (%42.5))] %26 local maxima, %43 large gradients and %24 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0289 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=aiisc, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=852227.8, rms=5.304 rms = 6.9981/5.3042, sse=1315383.8/852227.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 020: dt: 0.2500, sse=703978.5, rms=4.627 (12.766%) rms = 4.6361/4.6271, sse=706208.1/703978.5, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 021: dt: 0.1250, sse=685545.6, rms=4.535 (1.979%) 022: dt: 0.1250, sse=656610.9, rms=4.387 (3.273%) 023: dt: 0.1250, sse=645074.2, rms=4.326 (1.387%) rms = 4.2927/4.3262, sse=638751.7/645074.3, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=638751.8, rms=4.293 (0.776%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 3863 vertices, nripped=7127 mean border=44.6, 954 (16) missing vertices, mean dist 0.1 [0.1 (%42.8)->0.3 (%57.2))] %45 local maxima, %24 large gradients and %25 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0166 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=aiisc, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=852766.1, rms=5.294 rms = 7.3806/5.2941, sse=1440473.3/852766.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=696537.5, rms=4.576 (13.560%) rms = 4.6162/4.5762, sse=704744.1/696537.5, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 026: dt: 0.1250, sse=676024.6, rms=4.473 (2.249%) 027: dt: 0.1250, sse=645932.4, rms=4.318 (3.480%) rms = 4.2793/4.3177, sse=638678.1/645932.5, time step reduction 3 of 3 to 0.062 0 0 1 028: dt: 0.1250, sse=638678.1, rms=4.279 (0.887%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=117995 Gdiag_no=-1 vno start=0, stop=117995 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 3111 vertices, nripped=7127 mean border=43.2, 2039 (15) missing vertices, mean dist 0.0 [0.1 (%48.4)->0.2 (%51.6))] %47 local maxima, %20 large gradients and %25 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0108 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=aiisc, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=718479.2, rms=4.681 rms = 6.7490/4.6813, sse=1241627.6/718479.2, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 029: dt: 0.2500, sse=649057.8, rms=4.332 (7.468%) rms = 4.3254/4.3317, sse=646654.0/649057.7, time step reduction 2 of 3 to 0.125 0 0 1 030: dt: 0.2500, sse=646653.9, rms=4.325 (0.145%) 031: dt: 0.1250, sse=607851.4, rms=4.116 (4.832%) 032: dt: 0.1250, sse=586936.4, rms=4.002 (2.787%) rms = 3.9714/4.0017, sse=581381.0/586936.4, time step reduction 3 of 3 to 0.062 0 0 1 033: dt: 0.1250, sse=581380.9, rms=3.971 (0.757%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Pinning medial wall to white surface removing intersecting faces 000: 4 intersecting terminating search with 0 intersecting Writing output to ../surf/lh.pial.T1 #ET# mris_place_surface 2.29 minutes #VMPC# mris_place_surfaces VmPeak 1226884 mris_place_surface done @#@FSTIME 2023:09:02:20:34:30 mris_place_surface N 28 e 143.28 S 0.32 U 142.94 P 99% M 963008 F 0 R 260362 W 0 c 877 w 1 I 0 O 8304 L 1.02 1.03 1.00 @#@FSLOADPOST 2023:09:02:20:36:54 mris_place_surface N 28 1.00 1.01 1.00 #-------------------------------------------- #@# T1PialSurf rh Sat Sep 2 20:36:54 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white 7.2.0 7.2.0 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white Reading in input surface ../surf/rh.white Not smoothing input surface Area 242594 0.33481 0.13361 0.001040 1.9416 Corner 727782 60.00000 16.03722 0.253669 178.6112 Edge 363891 0.89196 0.21851 0.014419 2.9846 Hinge 363891 11.56341 12.08018 0.000028 179.9868 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=36294, wmmin=5, clip=110 MRIfindBrightNonWM(): 12575 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 62.8303 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label INFO: rip surface needed but not specified, so using input surface Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRIcopyHeader(): source has ctab MRISripSegs(): -2 2 0.5 ripped 0 vertex 60650: xyz = (34.2223,-14.25,81.7433) oxyz = (34.2223,-14.25,81.7433) wxzy = (34.2223,-14.25,81.7433) pxyz = (34.2223,-14.25,81.7433) CBVO Creating mask 121299 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 2; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=2 had to be increased for 205 vertices, nripped=7002 mean border=49.4, 330 (330) missing vertices, mean dist 1.6 [0.0 (%0.0)->2.3 (%100.0))] %12 local maxima, %55 large gradients and %27 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1016 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=aiisc, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=31322330.0, rms=36.969 001: dt: 0.5000, sse=21033232.0, rms=30.254 (18.164%) 002: dt: 0.5000, sse=14235919.0, rms=24.840 (17.894%) 003: dt: 0.5000, sse=10379360.0, rms=21.160 (14.814%) 004: dt: 0.5000, sse=8109669.0, rms=18.657 (11.830%) 005: dt: 0.5000, sse=6543648.0, rms=16.711 (10.427%) 006: dt: 0.5000, sse=5051221.0, rms=14.619 (12.524%) 007: dt: 0.5000, sse=3670868.2, rms=12.371 (15.374%) 008: dt: 0.5000, sse=2547225.5, rms=10.181 (17.704%) 009: dt: 0.5000, sse=1861262.5, rms=8.572 (15.805%) 010: dt: 0.5000, sse=1515478.5, rms=7.632 (10.965%) 011: dt: 0.5000, sse=1387281.9, rms=7.250 (4.997%) 012: dt: 0.5000, sse=1302473.8, rms=6.986 (3.648%) 013: dt: 0.5000, sse=1280612.6, rms=6.914 (1.036%) 014: dt: 0.5000, sse=1244165.8, rms=6.794 (1.735%) rms = 6.7687/6.7936, sse=1237291.4/1244165.7, time step reduction 1 of 3 to 0.250 0 0 1 015: dt: 0.5000, sse=1237291.4, rms=6.769 (0.366%) 016: dt: 0.2500, sse=808535.0, rms=5.177 (23.515%) 017: dt: 0.2500, sse=727079.8, rms=4.818 (6.940%) rms = 4.8275/4.8178, sse=729786.5/727079.7, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 018: dt: 0.1250, sse=665554.0, rms=4.526 (6.050%) 019: dt: 0.1250, sse=581930.7, rms=4.096 (9.502%) 020: dt: 0.1250, sse=561189.9, rms=3.982 (2.790%) rms = 3.9598/3.9819, sse=557361.5/561189.9, time step reduction 3 of 3 to 0.062 0 0 1 021: dt: 0.1250, sse=557361.5, rms=3.960 (0.556%) maximum number of reductions reached, breaking from loop positioning took 1.3 minutes Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 1; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=1 had to be increased for 4049 vertices, nripped=7002 mean border=47.5, 1176 (28) missing vertices, mean dist 0.1 [0.1 (%59.2)->0.4 (%40.8))] %24 local maxima, %42 large gradients and %26 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0297 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=aiisc, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=788005.2, rms=4.903 rms = 6.7131/4.9029, sse=1269250.6/788005.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 022: dt: 0.2500, sse=649761.6, rms=4.238 (13.569%) rms = 4.2758/4.2376, sse=657512.0/649761.6, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 023: dt: 0.1250, sse=632568.2, rms=4.147 (2.139%) 024: dt: 0.1250, sse=606979.4, rms=4.008 (3.363%) rms = 3.9662/4.0075, sse=599649.3/606979.4, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=599649.3, rms=3.966 (1.031%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 0.5; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 4365 vertices, nripped=7002 mean border=45.3, 1282 (16) missing vertices, mean dist 0.1 [0.1 (%44.4)->0.3 (%55.6))] %43 local maxima, %24 large gradients and %27 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0169 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=aiisc, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=790574.6, rms=4.905 rms = 7.1718/4.9049, sse=1417298.2/790574.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 026: dt: 0.2500, sse=647741.1, rms=4.216 (14.045%) rms = 4.3121/4.2160, sse=666363.5/647741.0, time step reduction 2 of 3 to 0.125 0 1 1 RMS increased, rejecting step 027: dt: 0.1250, sse=630047.4, rms=4.123 (2.217%) 028: dt: 0.1250, sse=607536.1, rms=4.000 (2.964%) rms = 3.9742/4.0004, sse=602746.1/607536.1, time step reduction 3 of 3 to 0.062 0 0 1 029: dt: 0.1250, sse=602746.1, rms=3.974 (0.654%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 95.2679900; border_hi = 53.4642260; border_low = 30.3926730; outside_low = 10.0000000; outside_hi = 47.6963390; sigma = 0.25; max_thickness = 10; step_size=0.5; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=121299 Gdiag_no=-1 vno start=0, stop=121299 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 3433 vertices, nripped=7002 mean border=44.0, 2562 (9) missing vertices, mean dist 0.0 [0.1 (%49.2)->0.2 (%50.8))] %46 local maxima, %20 large gradients and %27 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0110 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=aiisc, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=679075.7, rms=4.374 rms = 6.5205/4.3740, sse=1212545.4/679075.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 030: dt: 0.2500, sse=613497.3, rms=4.031 (7.852%) rms = 4.0185/4.0306, sse=610005.2/613497.3, time step reduction 2 of 3 to 0.125 0 0 1 031: dt: 0.2500, sse=610005.2, rms=4.018 (0.301%) 032: dt: 0.1250, sse=571948.2, rms=3.804 (5.339%) 033: dt: 0.1250, sse=555272.6, rms=3.708 (2.512%) rms = 3.6962/3.7084, sse=553002.5/555272.5, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=553002.6, rms=3.696 (0.329%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Pinning medial wall to white surface removing intersecting faces 000: 12 intersecting terminating search with 0 intersecting Writing output to ../surf/rh.pial.T1 #ET# mris_place_surface 2.44 minutes #VMPC# mris_place_surfaces VmPeak 1246708 mris_place_surface done @#@FSTIME 2023:09:02:20:36:54 mris_place_surface N 28 e 152.30 S 0.37 U 151.91 P 99% M 982976 F 0 R 265418 W 0 c 921 w 1 I 0 O 8536 L 1.00 1.01 1.00 @#@FSLOADPOST 2023:09:02:20:39:26 mris_place_surface N 28 1.00 1.00 1.00 #@# white curv lh Sat Sep 2 20:39:26 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv @#@FSTIME 2023:09:02:20:39:26 mris_place_surface N 5 e 1.29 S 0.05 U 1.23 P 99% M 163176 F 0 R 43250 W 0 c 7 w 2 I 0 O 928 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:27 mris_place_surface N 5 1.00 1.00 1.00 #@# white area lh Sat Sep 2 20:39:27 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area @#@FSTIME 2023:09:02:20:39:27 mris_place_surface N 3 e 0.60 S 0.04 U 0.55 P 99% M 163176 F 0 R 43249 W 0 c 3 w 1 I 0 O 928 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:28 mris_place_surface N 3 1.00 1.00 1.00 #@# pial curv lh Sat Sep 2 20:39:28 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial @#@FSTIME 2023:09:02:20:39:28 mris_place_surface N 5 e 1.28 S 0.05 U 1.22 P 99% M 163180 F 0 R 43252 W 0 c 8 w 1 I 0 O 928 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:29 mris_place_surface N 5 1.00 1.00 1.00 #@# pial area lh Sat Sep 2 20:39:29 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial @#@FSTIME 2023:09:02:20:39:29 mris_place_surface N 3 e 0.60 S 0.06 U 0.53 P 99% M 163176 F 0 R 43251 W 0 c 5 w 1 I 0 O 928 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:30 mris_place_surface N 3 1.00 1.00 1.00 #@# thickness lh Sat Sep 2 20:39:30 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 117995 vertices processed 25000 of 117995 vertices processed 50000 of 117995 vertices processed 75000 of 117995 vertices processed 100000 of 117995 vertices processed 0 of 117995 vertices processed 25000 of 117995 vertices processed 50000 of 117995 vertices processed 75000 of 117995 vertices processed 100000 of 117995 vertices processed thickness calculation complete, 0:126 truncations. 61422 vertices at 0 distance 114112 vertices at 1 distance 47429 vertices at 2 distance 10120 vertices at 3 distance 2150 vertices at 4 distance 483 vertices at 5 distance 142 vertices at 6 distance 56 vertices at 7 distance 26 vertices at 8 distance 13 vertices at 9 distance 15 vertices at 10 distance 12 vertices at 11 distance 5 vertices at 12 distance 1 vertices at 13 distance 1 vertices at 14 distance 0 vertices at 15 distance 0 vertices at 16 distance 1 vertices at 17 distance 1 vertices at 18 distance 0 vertices at 19 distance 1 vertices at 20 distance writing curvature file ../surf/lh.thickness @#@FSTIME 2023:09:02:20:39:30 mris_place_surface N 6 e 23.72 S 0.06 U 23.65 P 99% M 163192 F 0 R 49388 W 0 c 109 w 1 I 0 O 928 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:54 mris_place_surface N 6 1.00 1.00 1.00 #@# area and vertex vol lh Sat Sep 2 20:39:54 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub-032336_troubleshoot2_dup lh /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.volume masking with /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Total face volume 182481 Total vertex volume 182309 (mask=0) #@# sub-032336_troubleshoot2_dup lh 182309 vertexvol Done @#@FSTIME 2023:09:02:20:39:54 vertexvol N 4 e 1.21 S 0.11 U 1.09 P 99% M 270784 F 9 R 76909 W 0 c 12 w 29 I 1320 O 2784 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:55 vertexvol N 4 1.00 1.00 1.00 #@# white curv rh Sat Sep 2 20:39:55 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv @#@FSTIME 2023:09:02:20:39:55 mris_place_surface N 5 e 1.33 S 0.05 U 1.27 P 100% M 167524 F 0 R 45005 W 0 c 9 w 1 I 0 O 952 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:56 mris_place_surface N 5 1.00 1.00 1.00 #@# white area rh Sat Sep 2 20:39:56 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area @#@FSTIME 2023:09:02:20:39:56 mris_place_surface N 3 e 0.61 S 0.04 U 0.57 P 99% M 167524 F 0 R 45003 W 0 c 9 w 2 I 0 O 952 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:57 mris_place_surface N 3 1.00 1.00 1.00 #@# pial curv rh Sat Sep 2 20:39:57 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial @#@FSTIME 2023:09:02:20:39:57 mris_place_surface N 5 e 1.30 S 0.03 U 1.26 P 99% M 167524 F 0 R 45004 W 0 c 8 w 1 I 0 O 952 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:58 mris_place_surface N 5 1.00 1.00 1.00 #@# pial area rh Sat Sep 2 20:39:58 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial @#@FSTIME 2023:09:02:20:39:58 mris_place_surface N 3 e 0.61 S 0.05 U 0.56 P 100% M 167656 F 0 R 45006 W 0 c 4 w 1 I 0 O 952 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:39:59 mris_place_surface N 3 1.00 1.00 1.00 #@# thickness rh Sat Sep 2 20:39:59 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 121299 vertices processed 25000 of 121299 vertices processed 50000 of 121299 vertices processed 75000 of 121299 vertices processed 100000 of 121299 vertices processed 0 of 121299 vertices processed 25000 of 121299 vertices processed 50000 of 121299 vertices processed 75000 of 121299 vertices processed 100000 of 121299 vertices processed thickness calculation complete, 28:232 truncations. 62379 vertices at 0 distance 115597 vertices at 1 distance 49850 vertices at 2 distance 11476 vertices at 3 distance 2389 vertices at 4 distance 588 vertices at 5 distance 153 vertices at 6 distance 74 vertices at 7 distance 38 vertices at 8 distance 10 vertices at 9 distance 9 vertices at 10 distance 11 vertices at 11 distance 4 vertices at 12 distance 5 vertices at 13 distance 1 vertices at 14 distance 2 vertices at 15 distance 1 vertices at 16 distance 2 vertices at 17 distance 3 vertices at 18 distance 2 vertices at 19 distance 4 vertices at 20 distance writing curvature file ../surf/rh.thickness @#@FSTIME 2023:09:02:20:39:59 mris_place_surface N 6 e 24.05 S 0.08 U 23.97 P 99% M 167632 F 0 R 51316 W 0 c 128 w 1 I 0 O 952 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:40:23 mris_place_surface N 6 1.00 1.00 1.00 #@# area and vertex vol rh Sat Sep 2 20:40:23 EDT 2023 cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub-032336_troubleshoot2_dup rh /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.volume masking with /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Total face volume 191038 Total vertex volume 190849 (mask=0) #@# sub-032336_troubleshoot2_dup rh 190849 vertexvol Done @#@FSTIME 2023:09:02:20:40:23 vertexvol N 4 e 1.23 S 0.11 U 1.12 P 99% M 278216 F 0 R 79009 W 0 c 9 w 22 I 0 O 2856 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:40:24 vertexvol N 4 1.00 1.00 1.00 #----------------------------------------- #@# Curvature Stats lh Sat Sep 2 20:40:24 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub-032336_troubleshoot2_dup lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-032336_troubleshoot2_dup/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 209 ] Gb_filter = 0 WARN: k2 lookup min: -9.810986 WARN: k2 explicit min: -8.715651 vertex = 4013 WARN: S lookup min: -2.260435 WARN: S explicit min: 0.000000 vertex = 970 WARN: C lookup max: 57.010811 WARN: C explicit max: 34.360020 vertex = 64749 @#@FSTIME 2023:09:02:20:40:24 mris_curvature_stats N 11 e 1.84 S 0.07 U 1.75 P 99% M 163044 F 8 R 43912 W 0 c 14 w 8 I 1008 O 7464 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:40:26 mris_curvature_stats N 11 1.00 1.00 1.00 #----------------------------------------- #@# Curvature Stats rh Sat Sep 2 20:40:26 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-032336_troubleshoot2_dup rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-032336_troubleshoot2_dup/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 231 ] Gb_filter = 0 WARN: S lookup min: -0.241390 WARN: S explicit min: 0.000000 vertex = 251 @#@FSTIME 2023:09:02:20:40:26 mris_curvature_stats N 11 e 1.80 S 0.08 U 1.72 P 100% M 167556 F 0 R 45103 W 0 c 10 w 1 I 0 O 7656 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:40:28 mris_curvature_stats N 11 1.00 1.00 1.00 #-------------------------------------------- #@# Cortical ribbon mask Sat Sep 2 20:40:28 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub-032336_troubleshoot2_dup SUBJECTS_DIR is /home/aiisc/Downloads/freesurfer/subjects loading input data... Running hemis serially Processing left hemi MRIcopyHeader(): source has ctab computing distance to left white surface MRIcopyHeader(): source has ctab computing distance to left pial surface Processing right hemi MRIcopyHeader(): source has ctab computing distance to right white surface MRIcopyHeader(): source has ctab computing distance to right pial surface hemi masks overlap voxels = 201 MRIcopyHeader(): source has ctab writing volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/ribbon.mgz mris_volmask took 3.08 minutes writing ribbon files MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab @#@FSTIME 2023:09:02:20:40:28 mris_volmask N 12 e 184.59 S 0.75 U 183.82 P 99% M 910040 F 9 R 495765 W 0 c 1114 w 6 I 1320 O 792 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:43:32 mris_volmask N 12 1.06 1.02 1.00 #----------------------------------------- #@# Cortical Parc 2 lh Sat Sep 2 20:43:32 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-032336_troubleshoot2_dup lh ../surf/lh.sphere.reg /home/aiisc/Downloads/freesurfer/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /home/aiisc/Downloads/freesurfer/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 23 labels changed using aseg relabeling using gibbs priors... 000: 8195 changed, 117995 examined... 001: 1828 changed, 31548 examined... 002: 556 changed, 9793 examined... 003: 271 changed, 3202 examined... 004: 135 changed, 1514 examined... 005: 66 changed, 776 examined... 006: 26 changed, 379 examined... 007: 20 changed, 161 examined... 008: 5 changed, 112 examined... 009: 2 changed, 34 examined... 010: 0 changed, 10 examined... 12 labels changed using aseg 000: 221 total segments, 130 labels (1202 vertices) changed 001: 94 total segments, 4 labels (81 vertices) changed 002: 90 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 21 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1016 vertices marked for relabeling... 1016 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2023:09:02:20:43:32 mris_ca_label N 11 e 9.54 S 0.77 U 8.76 P 99% M 1582332 F 0 R 615418 W 0 c 65 w 3 I 42432 O 1856 L 1.06 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:43:42 mris_ca_label N 11 1.05 1.02 1.00 #----------------------------------------- #@# Cortical Parc 2 rh Sat Sep 2 20:43:42 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-032336_troubleshoot2_dup rh ../surf/rh.sphere.reg /home/aiisc/Downloads/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /home/aiisc/Downloads/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 25 labels changed using aseg relabeling using gibbs priors... 000: 8398 changed, 121299 examined... 001: 1879 changed, 32737 examined... 002: 499 changed, 10230 examined... 003: 206 changed, 2935 examined... 004: 88 changed, 1253 examined... 005: 49 changed, 529 examined... 006: 29 changed, 273 examined... 007: 16 changed, 161 examined... 008: 10 changed, 94 examined... 009: 2 changed, 57 examined... 010: 2 changed, 14 examined... 011: 4 changed, 12 examined... 012: 1 changed, 14 examined... 013: 0 changed, 7 examined... 13 labels changed using aseg 000: 234 total segments, 147 labels (1957 vertices) changed 001: 93 total segments, 6 labels (19 vertices) changed 002: 88 total segments, 1 labels (1 vertices) changed 003: 87 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 26 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 874 vertices marked for relabeling... 874 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2023:09:02:20:43:42 mris_ca_label N 11 e 10.24 S 0.83 U 9.40 P 99% M 1668424 F 0 R 732900 W 0 c 40 w 3 I 42776 O 1904 L 1.05 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:43:52 mris_ca_label N 11 1.05 1.02 1.00 #----------------------------------------- #@# Cortical Parc 3 lh Sat Sep 2 20:43:52 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-032336_troubleshoot2_dup lh ../surf/lh.sphere.reg /home/aiisc/Downloads/freesurfer/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /home/aiisc/Downloads/freesurfer/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1372 labels changed using aseg relabeling using gibbs priors... 000: 1738 changed, 117995 examined... 001: 423 changed, 8179 examined... 002: 118 changed, 2402 examined... 003: 62 changed, 725 examined... 004: 36 changed, 347 examined... 005: 22 changed, 218 examined... 006: 16 changed, 130 examined... 007: 13 changed, 89 examined... 008: 11 changed, 78 examined... 009: 7 changed, 63 examined... 010: 10 changed, 48 examined... 011: 4 changed, 52 examined... 012: 2 changed, 19 examined... 013: 3 changed, 11 examined... 014: 1 changed, 12 examined... 015: 2 changed, 8 examined... 016: 1 changed, 11 examined... 017: 0 changed, 6 examined... 322 labels changed using aseg 000: 53 total segments, 20 labels (106 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 1 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 644 vertices marked for relabeling... 644 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 7 seconds. @#@FSTIME 2023:09:02:20:43:52 mris_ca_label N 11 e 7.17 S 0.42 U 6.74 P 99% M 878976 F 0 R 282193 W 0 c 36 w 3 I 42976 O 1848 L 1.05 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:43:59 mris_ca_label N 11 1.12 1.04 1.01 #----------------------------------------- #@# Cortical Parc 3 rh Sat Sep 2 20:43:59 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-032336_troubleshoot2_dup rh ../surf/rh.sphere.reg /home/aiisc/Downloads/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /home/aiisc/Downloads/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1374 labels changed using aseg relabeling using gibbs priors... 000: 1856 changed, 121299 examined... 001: 454 changed, 8610 examined... 002: 170 changed, 2506 examined... 003: 91 changed, 931 examined... 004: 51 changed, 485 examined... 005: 28 changed, 266 examined... 006: 26 changed, 152 examined... 007: 17 changed, 139 examined... 008: 16 changed, 89 examined... 009: 8 changed, 81 examined... 010: 7 changed, 47 examined... 011: 2 changed, 33 examined... 012: 0 changed, 14 examined... 473 labels changed using aseg 000: 59 total segments, 26 labels (327 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 1 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 493 vertices marked for relabeling... 493 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 7 seconds. @#@FSTIME 2023:09:02:20:44:00 mris_ca_label N 11 e 7.40 S 0.37 U 7.01 P 99% M 914876 F 0 R 292267 W 0 c 36 w 3 I 42952 O 1904 L 1.12 1.04 1.01 @#@FSLOADPOST 2023:09:02:20:44:07 mris_ca_label N 11 1.10 1.04 1.00 #----------------------------------------- #@# WM/GM Contrast lh Sat Sep 2 20:44:07 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts pctsurfcon --s sub-032336_troubleshoot2_dup --lh-only Log file is /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts/pctsurfcon.log Sat Sep 2 20:44:07 EDT 2023 setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts /home/aiisc/Downloads/freesurfer/bin/pctsurfcon pctsurfcon 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /home/aiisc/Downloads/freesurfer mri_vol2surf --mov /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067462/lh.wm.mgh --regheader sub-032336_troubleshoot2_dup --cortex srcvol = /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00003; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Reading surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 67248 Masking with /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067462/lh.wm.mgh Dim: 117995 1 1 mri_vol2surf --mov /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067462/lh.gm.mgh --projfrac 0.3 --regheader sub-032336_troubleshoot2_dup --cortex srcvol = /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00003; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Reading surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Done reading source surface Reading thickness /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 81347 Masking with /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067462/lh.gm.mgh Dim: 117995 1 1 mri_concat /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067462/lh.wm.mgh /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067462/lh.gm.mgh --paired-diff-norm --mul 100 --o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.w-g.pct.mgh mri_segstats --in /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.w-g.pct.mgh --annot sub-032336_troubleshoot2_dup lh aparc --sum /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/stats/lh.w-g.pct.stats --snr 7.2.0 cwd cmdline mri_segstats --in /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.w-g.pct.mgh --annot sub-032336_troubleshoot2_dup lh aparc --sum /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/stats/lh.w-g.pct.stats --snr sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.annot Seg base 1000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.w-g.pct.mgh Vertex Area is 0.668473 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2023:09:02:20:44:07 pctsurfcon N 3 e 2.50 S 0.27 U 2.21 P 99% M 227432 F 21 R 168647 W 0 c 12 w 80 I 2912 O 2888 L 1.10 1.04 1.00 @#@FSLOADPOST 2023:09:02:20:44:09 pctsurfcon N 3 1.10 1.04 1.00 #----------------------------------------- #@# WM/GM Contrast rh Sat Sep 2 20:44:09 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts pctsurfcon --s sub-032336_troubleshoot2_dup --rh-only Log file is /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts/pctsurfcon.log Sat Sep 2 20:44:09 EDT 2023 setenv SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects cd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts /home/aiisc/Downloads/freesurfer/bin/pctsurfcon pctsurfcon 7.2.0 Linux aiisc-OptiPlex-3050 6.2.0-31-generic #31~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 16 13:45:26 UTC 2 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /home/aiisc/Downloads/freesurfer mri_vol2surf --mov /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067530/rh.wm.mgh --regheader sub-032336_troubleshoot2_dup --cortex srcvol = /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00003; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Reading surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 69017 Masking with /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067530/rh.wm.mgh Dim: 121299 1 1 mri_vol2surf --mov /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067530/rh.gm.mgh --projfrac 0.3 --regheader sub-032336_troubleshoot2_dup --cortex srcvol = /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00003; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Reading surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Done reading source surface Reading thickness /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 83750 Masking with /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067530/rh.gm.mgh Dim: 121299 1 1 mri_concat /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067530/rh.wm.mgh /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/tmp.pctsurfcon.1067530/rh.gm.mgh --paired-diff-norm --mul 100 --o /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.w-g.pct.mgh mri_segstats --in /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.w-g.pct.mgh --annot sub-032336_troubleshoot2_dup rh aparc --sum /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/stats/rh.w-g.pct.stats --snr 7.2.0 cwd cmdline mri_segstats --in /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.w-g.pct.mgh --annot sub-032336_troubleshoot2_dup rh aparc --sum /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/stats/rh.w-g.pct.stats --snr sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.annot Seg base 2000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.w-g.pct.mgh Vertex Area is 0.669611 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2023:09:02:20:44:09 pctsurfcon N 3 e 2.53 S 0.27 U 2.25 P 100% M 231216 F 0 R 172189 W 0 c 22 w 67 I 0 O 2960 L 1.10 1.04 1.00 @#@FSLOADPOST 2023:09:02:20:44:12 pctsurfcon N 3 1.09 1.04 1.00 #----------------------------------------- #@# Relabel Hypointensities Sat Sep 2 20:44:12 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... MRIcopyHeader(): source has ctab 768 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... MRIcopyHeader(): source has ctab 1141 voxels changed to hypointensity... MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 1888 hypointense voxels neighboring cortex changed @#@FSTIME 2023:09:02:20:44:12 mri_relabel_hypointensities N 3 e 11.36 S 0.39 U 10.95 P 99% M 454436 F 9 R 325437 W 0 c 79 w 7 I 1360 O 656 L 1.09 1.04 1.00 @#@FSLOADPOST 2023:09:02:20:44:23 mri_relabel_hypointensities N 3 1.08 1.03 1.00 #----------------------------------------- #@# APas-to-ASeg Sat Sep 2 20:44:23 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/ribbon.mgz --threads 1 --lh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label --lh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white --lh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial --rh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label --rh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white --rh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects outvol aseg.mgz 4 avail.processors, using 1 Loading aseg.presurf.hypos.mgz MRIcopyHeader(): source has ctab Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/ribbon.mgz Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 103674 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 853268 mri_surf2volseg done @#@FSTIME 2023:09:02:20:44:23 mri_surf2volseg N 20 e 9.70 S 0.25 U 9.45 P 99% M 824264 F 8 R 229781 W 0 c 64 w 7 I 1280 O 664 L 1.08 1.03 1.00 @#@FSLOADPOST 2023:09:02:20:44:33 mri_surf2volseg N 20 1.07 1.03 1.00 mri_brainvol_stats sub-032336_troubleshoot2_dup ComputeBrainVolumeStats2 VoxelVol=1, KeepCSF=1 #CBVS2 MaskVol 4459447.0 #CBVS2 BrainSegVol 942821.0 #CBVS2 BrainSegVolNotVent 890099.0 #CBVS2 SupraTentVol 854631.0 #CBVS2 SupraTentVolNotVent 801909.0 #CBVS2 lhCtxGM 182726.4 #CBVS2 rhCtxGM 191273.8 #CBVS2 lhCerebralWM 188060.0 #CBVS2 rhCerebralWM 195905.0 #CBVS2 SubCortGMVol 44339.0 #CBVS2 CerebellumVol 88190.0 #CBVS2 CerebellumGMVol 68416.0 #CBVS2 VentChorVol 48323.0 #CBVS2 3rd4th5thCSF 4399.0 #CBVS2 AllCSF 52722.0 #CBVS2 CCVol 3186.0 @#@FSTIME 2023:09:02:20:44:33 mri_brainvol_stats N 1 e 3.30 S 0.15 U 3.13 P 99% M 206712 F 23 R 122410 W 0 c 26 w 21 I 4008 O 8 L 1.07 1.03 1.00 @#@FSLOADPOST 2023:09:02:20:44:36 mri_brainvol_stats N 1 1.06 1.03 1.00 #----------------------------------------- #@# AParc-to-ASeg aparc Sat Sep 2 20:44:36 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.annot 1000 --lh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label --lh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white --lh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial --rh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.annot 2000 --rh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label --rh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white --rh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects outvol aparc+aseg.mgz 4 avail.processors, using 1 Loading aseg.mgz MRIcopyHeader(): source has ctab Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8722 vertices from lh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.annot Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8561 vertices from rh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 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--lh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label --lh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white --lh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial --rh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label --rh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white --rh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects outvol aparc.a2009s+aseg.mgz 4 avail.processors, using 1 Loading aseg.mgz MRIcopyHeader(): source has ctab Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8722 vertices from lh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.a2009s.annot Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8561 vertices from rh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 373474 ndotcheck = 11093 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 837424 mri_surf2volseg done @#@FSTIME 2023:09:02:20:45:38 mri_surf2volseg N 25 e 61.25 S 0.27 U 60.98 P 99% M 809560 F 0 R 229041 W 0 c 359 w 1 I 0 O 808 L 1.02 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:46:39 mri_surf2volseg N 25 1.01 1.02 1.00 #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Sat Sep 2 20:46:39 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label --lh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white --lh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial --rh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label --rh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white --rh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects outvol aparc.DKTatlas+aseg.mgz 4 avail.processors, using 1 Loading aseg.mgz MRIcopyHeader(): source has ctab Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8722 vertices from lh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.DKTatlas.annot Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8561 vertices from rh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 373474 ndotcheck = 11093 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 837328 mri_surf2volseg done @#@FSTIME 2023:09:02:20:46:39 mri_surf2volseg N 25 e 61.34 S 0.24 U 61.09 P 99% M 809476 F 0 R 228994 W 0 c 341 w 1 I 0 O 752 L 1.01 1.02 1.00 @#@FSLOADPOST 2023:09:02:20:47:40 mri_surf2volseg N 25 1.00 1.01 1.00 #----------------------------------------- #@# WMParc Sat Sep 2 20:47:40 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri mri_surf2volseg --o wmparc.mgz --label-wm --i aparc+aseg.mgz --threads 1 --lh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.annot 3000 --lh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label --lh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white --lh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial --rh-annot /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.annot 4000 --rh-cortex-mask /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label --rh-white /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white --rh-pial /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects outvol wmparc.mgz 4 avail.processors, using 1 Loading aparc+aseg.mgz MRIcopyHeader(): source has ctab Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 8722 vertices from lh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.aparc.annot Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 8561 vertices from rh hemi Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nrelabeled = 380779 ndotcheck = 3855 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 837440 mri_surf2volseg done @#@FSTIME 2023:09:02:20:47:41 mri_surf2volseg N 25 e 31.50 S 0.24 U 31.25 P 99% M 809480 F 0 R 226053 W 0 c 169 w 1 I 0 O 848 L 1.00 1.01 1.00 @#@FSLOADPOST 2023:09:02:20:48:12 mri_surf2volseg N 25 1.00 1.01 1.00 mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-032336_troubleshoot2_dup --surf-wm-vol --ctab /home/aiisc/Downloads/freesurfer/WMParcStatsLUT.txt --etiv setting seed for random number genererator to 1234 7.2.0 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-032336_troubleshoot2_dup --surf-wm-vol --ctab /home/aiisc/Downloads/freesurfer/WMParcStatsLUT.txt --etiv sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab Reporting on 70 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2023:09:02:20:48:12 mri_segstats N 24 e 213.61 S 0.75 U 212.84 P 99% M 239728 F 0 R 1206297 W 0 c 1283 w 3 I 56 O 24 L 1.00 1.01 1.00 @#@FSLOADPOST 2023:09:02:20:51:46 mri_segstats N 24 1.01 1.01 1.00 #----------------------------------------- #@# Parcellation Stats lh Sat Sep 2 20:51:46 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-032336_troubleshoot2_dup lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 182481 Total vertex volume 182309 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1484 982 2290 2.312 0.385 0.123 0.025 15 1.6 bankssts 970 642 1531 2.127 0.648 0.131 0.023 15 0.9 caudalanteriorcingulate 2159 1417 3327 2.291 0.319 0.113 0.024 18 2.1 caudalmiddlefrontal 1852 1229 2818 2.069 0.387 0.137 0.029 25 2.0 cuneus 677 431 1422 2.628 0.734 0.109 0.024 4 0.7 entorhinal 3921 2647 8005 2.542 0.577 0.121 0.026 43 3.9 fusiform 5012 3310 7207 2.076 0.385 0.119 0.027 54 5.6 inferiorparietal 4761 3352 10541 2.606 0.640 0.129 0.029 67 5.4 inferiortemporal 1278 862 2132 2.126 0.802 0.115 0.031 17 1.3 isthmuscingulate 6034 3814 8333 1.904 0.540 0.131 0.036 88 8.3 lateraloccipital 3540 2485 6050 2.223 0.468 0.133 0.033 49 4.3 lateralorbitofrontal 3321 2340 5126 2.005 0.471 0.138 0.035 46 4.5 lingual 2603 1832 4191 2.111 0.493 0.127 0.028 38 2.8 medialorbitofrontal 4769 3080 8960 2.488 0.523 0.116 0.024 58 4.6 middletemporal 1009 625 1745 2.380 0.587 0.089 0.018 9 0.7 parahippocampal 1525 955 2480 2.305 0.515 0.109 0.024 12 1.4 paracentral 2439 1713 4449 2.330 0.415 0.115 0.025 22 2.6 parsopercularis 906 624 1635 2.203 0.441 0.149 0.037 16 1.3 parsorbitalis 1787 1176 2841 2.202 0.403 0.125 0.027 19 2.0 parstriangularis 1810 1276 2269 1.875 0.349 0.130 0.032 20 2.3 pericalcarine 5699 3724 8950 2.141 0.470 0.118 0.025 58 6.0 postcentral 1372 982 2290 2.042 0.570 0.141 0.030 25 1.6 posteriorcingulate 5807 3667 9026 2.327 0.470 0.107 0.024 45 5.5 precentral 4326 2929 7163 2.264 0.477 0.114 0.024 39 4.2 precuneus 1393 1017 2758 2.356 0.530 0.132 0.029 24 1.6 rostralanteriorcingulate 7022 5163 11487 2.078 0.359 0.142 0.031 107 8.9 rostralmiddlefrontal 8489 5876 14507 2.261 0.420 0.122 0.026 91 9.1 superiorfrontal 6560 4284 9012 1.983 0.434 0.124 0.031 104 8.1 superiorparietal 6036 3839 10809 2.516 0.536 0.103 0.020 49 5.3 superiortemporal 5995 4125 9724 2.247 0.377 0.129 0.030 74 7.0 supramarginal 327 266 854 2.555 0.333 0.180 0.045 8 0.6 frontalpole 613 434 2050 3.296 0.664 0.109 0.027 6 0.6 temporalpole 676 422 1104 2.340 0.369 0.115 0.022 6 0.5 transversetemporal 3101 2115 5223 2.474 0.703 0.115 0.034 25 4.3 insula @#@FSTIME 2023:09:02:20:51:46 mris_anatomical_stats N 14 e 6.71 S 0.17 U 6.53 P 99% M 419516 F 9 R 124186 W 0 c 40 w 8 I 1520 O 24 L 1.01 1.01 1.00 @#@FSLOADPOST 2023:09:02:20:51:52 mris_anatomical_stats N 14 1.01 1.00 1.00 mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-032336_troubleshoot2_dup lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 182481 Total vertex volume 182309 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1484 1021 2290 2.312 0.385 0.136 0.039 31 2.3 bankssts 970 787 1531 2.127 0.648 0.178 0.044 153 1.7 caudalanteriorcingulate 2159 1471 3327 2.291 0.319 0.118 0.027 26 2.3 caudalmiddlefrontal 1852 1573 2818 2.069 0.387 0.151 0.038 37 2.7 cuneus 677 721 1422 2.628 0.734 0.295 0.095 29 3.5 entorhinal 3921 3466 8005 2.542 0.577 0.163 0.045 63 7.9 fusiform 5012 3787 7207 2.076 0.385 0.139 0.037 73 7.2 inferiorparietal 4761 4609 10541 2.606 0.640 0.175 0.047 107 9.4 inferiortemporal 1278 1161 2132 2.126 0.802 0.196 0.062 52 3.1 isthmuscingulate 6034 5087 8333 1.904 0.540 0.159 0.041 106 10.4 lateraloccipital 3540 3005 6050 2.223 0.468 0.162 0.044 61 6.3 lateralorbitofrontal 3321 2885 5126 2.005 0.471 0.159 0.041 75 5.8 lingual 2603 2181 4191 2.111 0.493 0.151 0.041 53 4.0 medialorbitofrontal 4769 4034 8960 2.488 0.523 0.142 0.036 82 6.9 middletemporal 1009 913 1745 2.380 0.587 0.188 0.058 19 2.8 parahippocampal 1525 1208 2480 2.305 0.515 0.130 0.031 19 2.0 paracentral 2439 2053 4449 2.330 0.415 0.129 0.026 24 2.6 parsopercularis 906 910 1635 2.203 0.441 0.181 0.044 15 1.7 parsorbitalis 1787 1378 2841 2.202 0.403 0.141 0.031 25 2.3 parstriangularis 1810 1187 2269 1.875 0.349 0.129 0.033 26 2.4 pericalcarine 5699 4640 8950 2.141 0.470 0.133 0.028 55 6.6 postcentral 1372 1269 2290 2.042 0.570 0.187 0.055 57 3.0 posteriorcingulate 5807 4061 9026 2.327 0.470 0.108 0.024 59 5.6 precentral 4326 3309 7163 2.264 0.477 0.137 0.033 56 6.1 precuneus 1393 1381 2758 2.356 0.530 0.165 0.035 25 2.1 rostralanteriorcingulate 7022 5999 11487 2.078 0.359 0.160 0.035 131 10.3 rostralmiddlefrontal 8489 6943 14507 2.261 0.420 0.140 0.031 123 10.3 superiorfrontal 6560 5034 9012 1.983 0.434 0.144 0.036 96 9.5 superiorparietal 6036 4643 10809 2.516 0.536 0.124 0.029 66 7.1 superiortemporal 5995 4560 9724 2.247 0.377 0.136 0.033 78 7.5 supramarginal 327 431 854 2.555 0.333 0.219 0.043 4 0.7 frontalpole 613 790 2050 3.296 0.664 0.150 0.027 3 0.7 temporalpole 676 519 1104 2.340 0.369 0.119 0.026 9 0.6 transversetemporal 3101 2024 5223 2.474 0.703 0.144 0.044 54 5.7 insula @#@FSTIME 2023:09:02:20:51:52 mris_anatomical_stats N 14 e 6.72 S 0.17 U 6.54 P 99% M 419492 F 0 R 124192 W 0 c 42 w 1 I 0 O 24 L 1.01 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:51:59 mris_anatomical_stats N 14 1.01 1.00 1.00 #----------------------------------------- #@# Parcellation Stats rh Sat Sep 2 20:51:59 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-032336_troubleshoot2_dup rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 191038 Total vertex volume 190849 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1115 728 1681 2.357 0.404 0.098 0.020 6 0.9 bankssts 988 678 1492 1.941 0.595 0.124 0.020 12 0.8 caudalanteriorcingulate 2227 1482 3699 2.361 0.364 0.119 0.026 20 2.4 caudalmiddlefrontal 1766 1174 3179 2.243 0.466 0.139 0.032 21 2.5 cuneus 551 364 1543 2.914 0.877 0.104 0.028 5 0.6 entorhinal 3905 2658 7955 2.548 0.592 0.122 0.026 43 4.0 fusiform 7460 4999 12672 2.303 0.413 0.118 0.025 87 7.5 inferiorparietal 4948 3505 11065 2.583 0.612 0.135 0.032 71 6.4 inferiortemporal 1145 785 1895 2.170 0.713 0.120 0.029 15 1.2 isthmuscingulate 5969 3852 8841 2.074 0.537 0.133 0.031 80 7.4 lateraloccipital 3753 2623 6477 2.251 0.552 0.134 0.034 57 5.1 lateralorbitofrontal 3560 2483 5870 2.120 0.485 0.151 0.036 57 5.2 lingual 3107 2225 5090 2.090 0.510 0.132 0.032 51 3.7 medialorbitofrontal 4632 3193 8790 2.445 0.456 0.118 0.025 52 4.8 middletemporal 1047 658 1503 2.022 0.545 0.083 0.019 5 0.8 parahippocampal 2256 1429 3651 2.345 0.498 0.106 0.022 17 2.1 paracentral 1531 1062 2781 2.399 0.428 0.135 0.036 20 2.4 parsopercularis 1178 819 2147 2.203 0.464 0.135 0.033 16 1.6 parsorbitalis 1730 1209 3117 2.412 0.422 0.133 0.034 20 2.5 parstriangularis 1885 1301 2405 1.913 0.439 0.119 0.027 18 1.9 pericalcarine 5526 3415 7684 2.057 0.457 0.107 0.021 52 4.8 postcentral 1493 1080 2510 2.161 0.486 0.142 0.031 22 1.9 posteriorcingulate 6398 3962 9699 2.310 0.454 0.106 0.022 48 6.2 precentral 4458 3031 7362 2.264 0.467 0.120 0.024 49 4.3 precuneus 908 681 1802 2.286 0.529 0.136 0.032 13 1.2 rostralanteriorcingulate 8579 6175 13771 2.091 0.379 0.135 0.029 117 10.1 rostralmiddlefrontal 8754 6073 15322 2.293 0.443 0.125 0.026 99 9.7 superiorfrontal 7021 4548 9974 2.003 0.421 0.120 0.027 88 7.9 superiorparietal 5159 3284 9548 2.579 0.479 0.101 0.020 44 4.2 superiortemporal 5194 3498 8256 2.281 0.371 0.112 0.022 49 5.1 supramarginal 430 315 993 2.408 0.336 0.172 0.043 11 0.7 frontalpole 610 429 2043 3.476 0.692 0.144 0.044 8 1.1 temporalpole 522 327 836 2.282 0.315 0.128 0.026 6 0.5 transversetemporal 2933 1974 5197 2.594 0.749 0.106 0.027 21 3.0 insula @#@FSTIME 2023:09:02:20:51:59 mris_anatomical_stats N 14 e 7.05 S 0.16 U 6.89 P 99% M 430688 F 0 R 127525 W 0 c 57 w 3 I 0 O 24 L 1.01 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:52:06 mris_anatomical_stats N 14 1.00 1.00 1.00 mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-032336_troubleshoot2_dup rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 191038 Total vertex volume 190849 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1115 676 1681 2.357 0.404 0.114 0.027 17 1.2 bankssts 988 846 1492 1.941 0.595 0.161 0.044 28 1.6 caudalanteriorcingulate 2227 1628 3699 2.361 0.364 0.126 0.030 27 2.5 caudalmiddlefrontal 1766 1763 3179 2.243 0.466 0.176 0.044 41 3.2 cuneus 551 689 1543 2.914 0.877 0.267 0.068 15 2.0 entorhinal 3905 3431 7955 2.548 0.592 0.166 0.048 94 7.7 fusiform 7460 6073 12672 2.303 0.413 0.140 0.034 103 10.3 inferiorparietal 4948 5069 11065 2.583 0.612 0.189 0.049 171 10.2 inferiortemporal 1145 1009 1895 2.170 0.713 0.188 0.055 29 2.7 isthmuscingulate 5969 4849 8841 2.074 0.537 0.151 0.038 152 9.7 lateraloccipital 3753 3215 6477 2.251 0.552 0.164 0.046 71 6.9 lateralorbitofrontal 3560 3180 5870 2.120 0.485 0.166 0.047 67 7.0 lingual 3107 2732 5090 2.090 0.510 0.156 0.043 56 4.7 medialorbitofrontal 4632 3949 8790 2.445 0.456 0.145 0.035 76 6.8 middletemporal 1047 885 1503 2.022 0.545 0.165 0.045 14 2.5 parahippocampal 2256 1706 3651 2.345 0.498 0.126 0.030 30 3.0 paracentral 1531 1242 2781 2.399 0.428 0.143 0.034 64 1.9 parsopercularis 1178 1160 2147 2.203 0.464 0.162 0.036 16 1.7 parsorbitalis 1730 1396 3117 2.412 0.422 0.134 0.031 20 2.0 parstriangularis 1885 1245 2405 1.913 0.439 0.126 0.033 37 2.3 pericalcarine 5526 4131 7684 2.057 0.457 0.119 0.024 56 5.5 postcentral 1493 1310 2510 2.161 0.486 0.192 0.058 52 3.4 posteriorcingulate 6398 4383 9699 2.310 0.454 0.106 0.024 74 5.8 precentral 4458 3416 7362 2.264 0.467 0.131 0.033 59 5.7 precuneus 908 898 1802 2.286 0.529 0.184 0.042 26 1.5 rostralanteriorcingulate 8579 7123 13771 2.091 0.379 0.151 0.033 138 11.4 rostralmiddlefrontal 8754 7224 15322 2.293 0.443 0.143 0.032 158 11.2 superiorfrontal 7021 5538 9974 2.003 0.421 0.140 0.032 92 9.4 superiorparietal 5159 4069 9548 2.579 0.479 0.118 0.025 49 4.8 superiortemporal 5194 3738 8256 2.281 0.371 0.121 0.027 55 6.0 supramarginal 430 536 993 2.408 0.336 0.214 0.044 5 0.9 frontalpole 610 753 2043 3.476 0.692 0.186 0.042 6 1.1 temporalpole 522 408 836 2.282 0.315 0.117 0.023 4 0.5 transversetemporal 2933 1862 5197 2.594 0.749 0.133 0.034 57 4.3 insula @#@FSTIME 2023:09:02:20:52:06 mris_anatomical_stats N 14 e 7.67 S 0.15 U 7.51 P 99% M 430680 F 0 R 127524 W 0 c 41 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:52:14 mris_anatomical_stats N 14 1.00 1.00 1.00 #----------------------------------------- #@# Parcellation Stats 2 lh Sat Sep 2 20:52:14 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-032336_troubleshoot2_dup lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 182481 Total vertex volume 182309 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1201 890 1944 2.142 0.382 0.172 0.041 21 2.3 G_and_S_frontomargin 1148 767 2075 2.234 0.561 0.119 0.028 13 1.3 G_and_S_occipital_inf 1147 705 1897 2.217 0.539 0.116 0.027 10 1.2 G_and_S_paracentral 1463 1018 2788 2.448 0.386 0.137 0.032 19 2.0 G_and_S_subcentral 676 583 1470 2.193 0.393 0.196 0.049 18 1.2 G_and_S_transv_frontopol 2087 1494 3586 2.262 0.432 0.125 0.026 28 2.2 G_and_S_cingul-Ant 1128 759 1803 2.250 0.462 0.101 0.018 8 0.9 G_and_S_cingul-Mid-Ant 1052 728 1662 2.185 0.351 0.120 0.024 11 1.0 G_and_S_cingul-Mid-Post 473 343 1143 2.519 0.540 0.147 0.037 9 0.6 G_cingul-Post-dorsal 319 217 745 2.538 0.692 0.118 0.033 4 0.4 G_cingul-Post-ventral 1628 1058 2667 2.103 0.386 0.136 0.034 26 1.8 G_cuneus 1463 1047 3324 2.541 0.426 0.133 0.035 19 1.9 G_front_inf-Opercular 380 226 774 2.487 0.246 0.118 0.029 6 0.3 G_front_inf-Orbital 1126 721 2211 2.404 0.317 0.129 0.029 16 1.3 G_front_inf-Triangul 3061 2262 5884 2.203 0.335 0.142 0.032 57 3.6 G_front_middle 5843 4047 11391 2.366 0.456 0.129 0.028 76 6.6 G_front_sup 632 441 1165 2.684 0.533 0.134 0.051 8 1.2 G_Ins_lg_and_S_cent_ins 530 405 1567 3.106 0.630 0.152 0.049 8 1.1 G_insular_short 1679 1073 2383 1.816 0.541 0.143 0.046 34 2.9 G_occipital_middle 1077 650 1427 1.776 0.600 0.127 0.039 18 1.7 G_occipital_sup 1428 931 3400 2.709 0.439 0.130 0.029 22 1.5 G_oc-temp_lat-fusifor 2385 1673 4040 2.067 0.483 0.153 0.040 41 3.5 G_oc-temp_med-Lingual 1453 911 3125 2.589 0.717 0.107 0.025 15 1.3 G_oc-temp_med-Parahip 2067 1462 4290 2.319 0.506 0.144 0.041 41 2.9 G_orbital 2044 1342 3748 2.257 0.386 0.130 0.033 31 2.5 G_pariet_inf-Angular 3073 2132 5674 2.307 0.392 0.134 0.030 46 3.5 G_pariet_inf-Supramar 2778 1807 4030 1.948 0.469 0.140 0.041 70 4.5 G_parietal_sup 2161 1328 3875 2.276 0.424 0.121 0.028 28 2.3 G_postcentral 2089 1209 3876 2.542 0.389 0.110 0.025 21 2.0 G_precentral 1952 1302 4092 2.462 0.499 0.126 0.030 26 2.1 G_precuneus 947 666 2006 2.311 0.420 0.139 0.032 20 1.1 G_rectus 613 406 945 2.302 0.739 0.109 0.034 7 0.8 G_subcallosal 542 319 1118 2.632 0.308 0.121 0.024 7 0.4 G_temp_sup-G_T_transv 2129 1303 5105 2.925 0.449 0.122 0.029 26 2.4 G_temp_sup-Lateral 446 312 1150 3.176 0.431 0.094 0.021 2 0.4 G_temp_sup-Plan_polar 1317 853 1983 2.242 0.344 0.102 0.024 12 1.2 G_temp_sup-Plan_tempo 2543 1783 6850 2.818 0.625 0.135 0.033 47 3.0 G_temporal_inf 2604 1645 5972 2.711 0.520 0.130 0.029 43 3.0 G_temporal_middle 320 217 366 1.958 0.406 0.101 0.017 2 0.2 Lat_Fis-ant-Horizont 388 280 502 2.045 0.349 0.112 0.021 2 0.4 Lat_Fis-ant-Vertical 1194 784 1380 2.078 0.335 0.104 0.023 7 1.1 Lat_Fis-post 1847 1166 2571 1.831 0.511 0.137 0.035 28 2.4 Pole_occipital 1484 1092 4595 3.056 0.734 0.135 0.033 20 1.8 Pole_temporal 2111 1503 2638 1.915 0.432 0.125 0.030 20 2.6 S_calcarine 2688 1778 3119 1.969 0.486 0.101 0.020 13 2.4 S_central 706 490 933 1.992 0.406 0.112 0.021 5 0.6 S_cingul-Marginalis 424 289 588 2.323 0.449 0.089 0.020 2 0.3 S_circular_insula_ant 1478 952 1872 2.235 0.636 0.084 0.012 5 0.9 S_circular_insula_inf 1620 1063 1959 2.156 0.386 0.100 0.022 7 1.6 S_circular_insula_sup 1070 726 1897 2.438 0.563 0.115 0.024 11 1.0 S_collat_transv_ant 348 236 527 2.097 0.516 0.127 0.026 3 0.4 S_collat_transv_post 2024 1385 2662 2.035 0.353 0.115 0.023 15 2.2 S_front_inf 1404 970 1796 1.984 0.336 0.119 0.024 12 1.5 S_front_middle 2144 1523 3243 2.147 0.298 0.114 0.025 19 2.1 S_front_sup 210 166 353 2.321 0.321 0.168 0.045 3 0.5 S_interm_prim-Jensen 2429 1650 3083 2.020 0.304 0.117 0.022 21 2.3 S_intrapariet_and_P_trans 838 538 937 1.826 0.363 0.128 0.029 9 1.0 S_oc_middle_and_Lunatus 795 522 927 1.949 0.330 0.109 0.021 6 0.7 S_oc_sup_and_transversal 425 273 505 2.073 0.313 0.100 0.028 3 0.4 S_occipital_ant 1049 681 1271 2.221 0.358 0.093 0.016 4 0.8 S_oc-temp_lat 1667 1153 2146 2.110 0.361 0.103 0.019 8 1.5 S_oc-temp_med_and_Lingual 259 185 331 1.925 0.376 0.119 0.028 2 0.3 S_orbital_lateral 638 433 701 1.827 0.427 0.118 0.022 5 0.6 S_orbital_med-olfact 1445 1031 2126 2.098 0.388 0.140 0.031 17 1.9 S_orbital-H_Shaped 1914 1266 2384 2.086 0.345 0.105 0.017 13 1.5 S_parieto_occipital 1328 846 1162 1.565 0.580 0.133 0.032 25 1.4 S_pericallosal 2821 1890 3469 2.028 0.348 0.111 0.021 20 2.8 S_postcentral 1230 806 1594 2.232 0.326 0.106 0.021 8 1.2 S_precentral-inf-part 810 529 952 2.091 0.323 0.095 0.014 4 0.6 S_precentral-sup-part 897 651 1099 1.870 0.338 0.136 0.024 9 1.1 S_suborbital 990 677 1420 2.136 0.537 0.105 0.019 5 0.9 S_subparietal 1554 1081 1906 2.075 0.296 0.117 0.021 12 1.6 S_temporal_inf 5643 3719 7601 2.213 0.369 0.105 0.020 39 5.0 S_temporal_sup 397 264 511 2.170 0.313 0.091 0.012 1 0.3 S_temporal_transverse @#@FSTIME 2023:09:02:20:52:14 mris_anatomical_stats N 14 e 7.90 S 0.18 U 7.72 P 99% M 419492 F 0 R 124018 W 0 c 44 w 1 I 0 O 40 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:52:22 mris_anatomical_stats N 14 1.00 1.00 1.00 #----------------------------------------- #@# Parcellation Stats 2 rh Sat Sep 2 20:52:22 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-032336_troubleshoot2_dup rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 191038 Total vertex volume 190849 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 860 564 1179 2.015 0.369 0.129 0.026 12 0.9 G_and_S_frontomargin 968 651 1722 2.388 0.492 0.144 0.034 15 1.3 G_and_S_occipital_inf 1397 854 2237 2.158 0.575 0.116 0.026 15 1.5 G_and_S_paracentral 1404 926 2442 2.394 0.342 0.123 0.029 16 1.5 G_and_S_subcentral 924 754 1792 2.060 0.383 0.158 0.035 18 1.3 G_and_S_transv_frontopol 2949 2084 4827 2.143 0.409 0.120 0.025 34 3.1 G_and_S_cingul-Ant 1216 836 1975 2.233 0.443 0.110 0.021 11 1.1 G_and_S_cingul-Mid-Ant 1210 855 2007 2.284 0.388 0.114 0.025 10 1.3 G_and_S_cingul-Mid-Post 411 313 913 2.377 0.468 0.166 0.046 9 0.6 G_cingul-Post-dorsal 299 201 725 2.654 0.666 0.114 0.030 3 0.3 G_cingul-Post-ventral 1651 1082 3159 2.259 0.486 0.143 0.036 24 2.4 G_cuneus 1128 793 2487 2.558 0.408 0.146 0.041 18 2.1 G_front_inf-Opercular 348 227 829 2.643 0.327 0.137 0.038 5 0.5 G_front_inf-Orbital 566 412 1274 2.525 0.284 0.147 0.040 9 0.9 G_front_inf-Triangul 4400 3124 8515 2.250 0.371 0.148 0.032 81 5.5 G_front_middle 5915 4142 11831 2.398 0.489 0.135 0.030 84 7.2 G_front_sup 480 328 1008 2.780 0.526 0.114 0.033 5 0.5 G_Ins_lg_and_S_cent_ins 595 424 1673 3.177 1.008 0.117 0.035 5 0.8 G_insular_short 1906 1234 3548 2.194 0.529 0.128 0.031 31 2.4 G_occipital_middle 1160 742 1630 1.921 0.396 0.134 0.039 18 1.8 G_occipital_sup 1727 1103 4165 2.768 0.550 0.124 0.029 24 1.8 G_oc-temp_lat-fusifor 2231 1550 4279 2.239 0.481 0.158 0.041 42 3.4 G_oc-temp_med-Lingual 1259 779 2813 2.545 0.849 0.092 0.025 10 1.2 G_oc-temp_med-Parahip 2585 1824 5516 2.398 0.532 0.134 0.035 48 3.4 G_orbital 2439 1632 5057 2.448 0.438 0.129 0.028 37 2.8 G_pariet_inf-Angular 2479 1680 4855 2.428 0.325 0.122 0.026 34 2.6 G_pariet_inf-Supramar 2342 1491 3948 2.111 0.466 0.141 0.039 45 3.7 G_parietal_sup 1930 1061 2980 2.223 0.405 0.105 0.022 21 1.7 G_postcentral 2478 1392 4431 2.496 0.428 0.107 0.023 23 2.4 G_precentral 1971 1315 4172 2.484 0.482 0.135 0.029 33 2.1 G_precuneus 891 652 1867 2.241 0.482 0.143 0.042 21 1.3 G_rectus 521 362 892 2.477 0.748 0.141 0.048 7 1.0 G_subcallosal 383 239 704 2.396 0.272 0.126 0.029 6 0.4 G_temp_sup-G_T_transv 1905 1156 4442 2.869 0.399 0.125 0.029 29 2.0 G_temp_sup-Lateral 711 513 1610 2.960 0.582 0.112 0.031 6 0.9 G_temp_sup-Plan_polar 895 569 1455 2.384 0.369 0.082 0.015 4 0.6 G_temp_sup-Plan_tempo 3025 2127 7649 2.698 0.609 0.140 0.036 52 4.0 G_temporal_inf 2733 1904 5975 2.520 0.455 0.124 0.028 38 3.0 G_temporal_middle 305 210 459 2.555 0.556 0.139 0.042 3 0.5 Lat_Fis-ant-Horizont 102 84 171 2.273 0.294 0.126 0.026 0 0.2 Lat_Fis-ant-Vertical 1450 944 1720 2.180 0.386 0.101 0.020 8 1.2 Lat_Fis-post 2730 1736 3622 1.843 0.558 0.141 0.036 41 3.9 Pole_occipital 1603 1151 4434 2.938 0.736 0.140 0.039 23 2.4 Pole_temporal 1894 1334 2455 2.058 0.428 0.122 0.024 16 1.9 S_calcarine 2878 1887 3198 1.898 0.451 0.102 0.018 16 2.4 S_central 1252 862 1598 2.056 0.349 0.114 0.021 10 1.1 S_cingul-Marginalis 695 469 893 2.205 0.507 0.101 0.024 4 0.6 S_circular_insula_ant 1242 801 1527 2.205 0.503 0.082 0.015 4 0.8 S_circular_insula_inf 1139 756 1463 2.282 0.399 0.102 0.025 6 1.2 S_circular_insula_sup 980 676 1569 2.364 0.502 0.114 0.018 7 1.0 S_collat_transv_ant 350 245 385 1.929 0.354 0.145 0.022 3 0.4 S_collat_transv_post 1516 1074 2211 2.161 0.388 0.113 0.026 10 1.6 S_front_inf 2240 1583 2876 2.035 0.369 0.126 0.027 18 2.8 S_front_middle 1707 1162 2393 2.165 0.341 0.111 0.021 12 1.6 S_front_sup 509 348 596 2.006 0.264 0.088 0.013 2 0.3 S_interm_prim-Jensen 3322 2267 4094 1.982 0.352 0.106 0.018 21 2.8 S_intrapariet_and_P_trans 683 457 775 1.969 0.298 0.111 0.019 4 0.6 S_oc_middle_and_Lunatus 1136 732 1330 1.983 0.312 0.089 0.018 7 0.7 S_oc_sup_and_transversal 882 595 1157 2.117 0.316 0.109 0.020 7 0.8 S_occipital_ant 986 683 1702 2.474 0.521 0.124 0.024 8 1.0 S_oc-temp_lat 1812 1274 2317 2.006 0.408 0.114 0.022 13 1.8 S_oc-temp_med_and_Lingual 676 480 817 1.903 0.317 0.130 0.022 6 0.7 S_orbital_lateral 806 546 903 1.803 0.402 0.108 0.019 6 0.7 S_orbital_med-olfact 1341 938 2173 2.213 0.487 0.131 0.031 14 1.8 S_orbital-H_Shaped 1693 1110 2085 2.101 0.368 0.103 0.016 11 1.4 S_parieto_occipital 1322 857 1131 1.631 0.523 0.128 0.024 20 1.2 S_pericallosal 2213 1456 2680 2.072 0.355 0.108 0.020 16 2.0 S_postcentral 1301 854 1683 2.210 0.357 0.106 0.021 8 1.2 S_precentral-inf-part 1023 659 1211 2.157 0.339 0.098 0.018 5 0.8 S_precentral-sup-part 339 257 428 1.832 0.289 0.162 0.027 5 0.4 S_suborbital 933 656 1393 2.164 0.373 0.121 0.024 8 0.9 S_subparietal 1330 949 1773 2.198 0.421 0.126 0.025 13 1.6 S_temporal_inf 5801 3854 8644 2.323 0.396 0.103 0.019 40 4.6 S_temporal_sup 255 174 398 2.377 0.297 0.104 0.016 1 0.2 S_temporal_transverse @#@FSTIME 2023:09:02:20:52:22 mris_anatomical_stats N 14 e 8.28 S 0.15 U 8.13 P 99% M 430680 F 0 R 127524 W 0 c 49 w 1 I 0 O 40 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:52:30 mris_anatomical_stats N 14 1.00 1.00 1.00 #----------------------------------------- #@# Parcellation Stats 3 lh Sat Sep 2 20:52:30 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-032336_troubleshoot2_dup lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 182481 Total vertex volume 182309 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1642 1085 2487 2.166 0.574 0.122 0.022 20 1.5 caudalanteriorcingulate 2287 1502 3521 2.285 0.321 0.112 0.024 20 2.2 caudalmiddlefrontal 2504 1652 3764 2.085 0.387 0.123 0.026 29 2.4 cuneus 608 385 1325 2.655 0.738 0.105 0.023 4 0.6 entorhinal 3532 2357 6865 2.504 0.519 0.120 0.026 39 3.5 fusiform 5016 3316 7361 2.084 0.411 0.123 0.028 60 5.8 inferiorparietal 4790 3387 11187 2.654 0.674 0.130 0.029 68 5.4 inferiortemporal 1260 854 2106 2.126 0.801 0.114 0.030 16 1.2 isthmuscingulate 5925 3743 8049 1.893 0.525 0.130 0.035 84 8.1 lateraloccipital 3931 2782 6715 2.209 0.488 0.142 0.037 60 5.5 lateralorbitofrontal 3398 2399 5285 2.009 0.476 0.138 0.035 47 4.5 lingual 2158 1513 3650 2.124 0.510 0.123 0.028 33 2.4 medialorbitofrontal 6154 4017 10878 2.419 0.513 0.115 0.023 70 6.0 middletemporal 1103 687 1918 2.383 0.595 0.091 0.019 10 0.8 parahippocampal 1827 1150 2904 2.270 0.502 0.108 0.023 14 1.7 paracentral 2264 1582 4043 2.325 0.413 0.117 0.026 21 2.5 parsopercularis 939 615 1600 2.302 0.365 0.111 0.022 9 0.8 parsorbitalis 2185 1450 3454 2.184 0.402 0.123 0.027 24 2.5 parstriangularis 1789 1255 2228 1.876 0.351 0.130 0.032 19 2.2 pericalcarine 6356 4168 9735 2.132 0.467 0.120 0.026 64 6.9 postcentral 1469 1034 2356 2.054 0.553 0.139 0.030 26 1.7 posteriorcingulate 5838 3689 9106 2.336 0.463 0.108 0.024 46 5.6 precentral 4213 2865 7100 2.265 0.483 0.118 0.025 41 4.2 precuneus 1728 1262 3222 2.308 0.526 0.134 0.030 27 2.0 rostralanteriorcingulate 5067 3698 8418 2.078 0.367 0.139 0.031 75 6.5 rostralmiddlefrontal 9284 6648 16364 2.239 0.416 0.132 0.029 123 10.9 superiorfrontal 5466 3559 7392 1.964 0.428 0.125 0.032 93 7.0 superiorparietal 7729 4990 14731 2.574 0.563 0.108 0.023 67 7.5 superiortemporal 5605 3853 8912 2.221 0.381 0.126 0.028 67 6.3 supramarginal 668 418 1100 2.338 0.378 0.116 0.022 6 0.5 transversetemporal 2538 1719 4532 2.549 0.710 0.105 0.029 18 2.9 insula @#@FSTIME 2023:09:02:20:52:30 mris_anatomical_stats N 14 e 6.72 S 0.16 U 6.55 P 100% M 419496 F 0 R 121250 W 0 c 42 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:52:37 mris_anatomical_stats N 14 1.00 1.00 1.00 #----------------------------------------- #@# Parcellation Stats 3 rh Sat Sep 2 20:52:37 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-032336_troubleshoot2_dup rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 191038 Total vertex volume 190849 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1105 759 1669 1.944 0.602 0.125 0.021 14 0.9 caudalanteriorcingulate 2300 1523 3754 2.361 0.363 0.119 0.026 21 2.4 caudalmiddlefrontal 2111 1385 3736 2.249 0.441 0.133 0.029 25 2.6 cuneus 533 349 1503 2.912 0.895 0.106 0.029 6 0.6 entorhinal 3516 2353 6889 2.537 0.560 0.119 0.025 37 3.5 fusiform 7456 4988 12655 2.296 0.419 0.118 0.024 86 7.5 inferiorparietal 5227 3725 11928 2.606 0.632 0.136 0.032 74 6.8 inferiortemporal 1135 774 1866 2.184 0.705 0.120 0.029 15 1.1 isthmuscingulate 6108 3939 8996 2.064 0.530 0.133 0.032 82 7.6 lateraloccipital 4133 2868 7368 2.260 0.555 0.133 0.034 66 5.7 lateralorbitofrontal 3472 2425 5744 2.120 0.483 0.151 0.036 56 5.1 lingual 2358 1714 4123 2.122 0.542 0.135 0.035 42 3.0 medialorbitofrontal 5476 3781 10044 2.414 0.446 0.115 0.023 57 5.3 middletemporal 1099 697 1564 2.012 0.547 0.084 0.019 6 0.8 parahippocampal 2362 1497 3827 2.347 0.505 0.105 0.022 17 2.1 paracentral 1820 1270 3291 2.401 0.417 0.136 0.038 23 2.9 parsopercularis 1049 689 1641 2.147 0.437 0.123 0.030 11 1.3 parsorbitalis 1675 1167 2871 2.343 0.449 0.130 0.032 19 2.2 parstriangularis 1870 1302 2388 1.903 0.432 0.119 0.027 17 2.0 pericalcarine 6151 3796 8355 2.041 0.464 0.109 0.022 61 5.6 postcentral 1532 1108 2579 2.189 0.461 0.142 0.032 23 2.0 posteriorcingulate 6218 3849 9612 2.335 0.436 0.106 0.022 46 6.1 precentral 4523 3068 7511 2.253 0.486 0.120 0.024 51 4.4 precuneus 1334 945 2332 2.213 0.521 0.130 0.029 19 1.5 rostralanteriorcingulate 6504 4685 10624 2.115 0.368 0.140 0.030 93 8.1 rostralmiddlefrontal 11066 7821 19020 2.224 0.450 0.128 0.027 132 12.4 superiorfrontal 5896 3852 8527 2.019 0.409 0.121 0.027 73 6.8 superiorparietal 6645 4273 12949 2.641 0.572 0.106 0.024 59 6.2 superiortemporal 4929 3321 7845 2.280 0.367 0.112 0.023 47 4.8 supramarginal 508 319 830 2.298 0.310 0.127 0.026 6 0.5 transversetemporal 2627 1774 4810 2.637 0.737 0.102 0.024 17 2.3 insula @#@FSTIME 2023:09:02:20:52:37 mris_anatomical_stats N 14 e 7.69 S 0.16 U 7.52 P 99% M 430684 F 0 R 124506 W 0 c 42 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:52:45 mris_anatomical_stats N 14 1.00 1.00 1.00 #-------------------------------------------- #@# ASeg Stats Sat Sep 2 20:52:45 EDT 2023 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /home/aiisc/Downloads/freesurfer/ASegStatsLUT.txt --subject sub-032336_troubleshoot2_dup setting seed for random number genererator to 1234 7.2.0 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /home/aiisc/Downloads/freesurfer/ASegStatsLUT.txt --subject sub-032336_troubleshoot2_dup sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) Computing euler number orig.nofix lheno = -4, rheno = -10 orig.nofix lhholes = 3, rhholes = 6 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab Reporting on 45 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2023:09:02:20:52:45 mri_segstats N 32 e 115.05 S 0.50 U 114.54 P 99% M 283716 F 0 R 749903 W 0 c 822 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:54:40 mri_segstats N 32 1.00 1.00 1.00 /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label #-------------------------------------------- #@# BA_exvivo Labels lh Sat Sep 2 20:54:40 EDT 2023 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 54 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4183 mri_label2label: Done @#@FSTIME 2023:09:02:20:54:40 mri_label2label N 12 e 3.99 S 0.18 U 3.81 P 99% M 517092 F 0 R 151074 W 0 c 19 w 8 I 16208 O 240 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:54:44 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 99 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8008 mri_label2label: Done @#@FSTIME 2023:09:02:20:54:44 mri_label2label N 12 e 4.55 S 0.21 U 4.33 P 99% M 517356 F 0 R 151143 W 0 c 20 w 2 I 632 O 448 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:54:48 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 11 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4088 mri_label2label: Done @#@FSTIME 2023:09:02:20:54:48 mri_label2label N 12 e 3.97 S 0.23 U 3.73 P 99% M 517092 F 0 R 151072 W 0 c 17 w 3 I 320 O 208 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:54:52 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 76 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6059 mri_label2label: Done @#@FSTIME 2023:09:02:20:54:52 mri_label2label N 12 e 4.11 S 0.23 U 3.88 P 99% M 517284 F 0 R 151109 W 0 c 16 w 2 I 472 O 336 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:54:56 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 21 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 5805 mri_label2label: Done @#@FSTIME 2023:09:02:20:54:56 mri_label2label N 12 e 4.23 S 0.19 U 4.03 P 99% M 517280 F 0 R 151103 W 0 c 21 w 2 I 456 O 272 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:01 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4089 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:01 mri_label2label N 12 e 3.85 S 0.21 U 3.63 P 99% M 517088 F 0 R 151070 W 0 c 25 w 3 I 320 O 208 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:05 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 77 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 13666 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:05 mri_label2label N 12 e 4.99 S 0.19 U 4.79 P 99% M 517812 F 0 R 151241 W 0 c 29 w 4 I 1056 O 680 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:10 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 176 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4357 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:10 mri_label2label N 12 e 3.99 S 0.20 U 3.78 P 99% M 517092 F 0 R 151075 W 0 c 22 w 2 I 328 O 256 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:14 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 462 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 3884 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:14 mri_label2label N 12 e 3.77 S 0.19 U 3.57 P 99% M 517068 F 0 R 151064 W 0 c 15 w 3 I 272 O 288 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:17 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V1_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 665 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5306 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:17 mri_label2label N 12 e 3.96 S 0.19 U 3.75 P 99% M 517236 F 0 R 151087 W 0 c 20 w 3 I 376 O 392 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:21 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V2_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 1198 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 9312 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:21 mri_label2label N 12 e 4.41 S 0.21 U 4.19 P 99% M 517492 F 0 R 151157 W 0 c 25 w 4 I 664 O 672 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:26 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.MT_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 94 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2112 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:26 mri_label2label N 12 e 3.59 S 0.21 U 3.37 P 99% M 517016 F 0 R 151038 W 0 c 19 w 3 I 168 O 144 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:29 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 73 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1363 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:29 mri_label2label N 12 e 3.56 S 0.19 U 3.36 P 99% M 516992 F 0 R 151026 W 0 c 18 w 3 I 120 O 96 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:33 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 83 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1282 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:33 mri_label2label N 12 e 3.54 S 0.19 U 3.34 P 99% M 516992 F 0 R 151024 W 0 c 25 w 3 I 112 O 96 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:37 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 22 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 436 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:37 mri_label2label N 12 e 3.39 S 0.17 U 3.20 P 99% M 516840 F 0 R 153856 W 0 c 25 w 2 I 40 O 32 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:40 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 722 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:40 mri_label2label N 12 e 3.43 S 0.17 U 3.25 P 99% M 516848 F 0 R 151011 W 0 c 13 w 4 I 72 O 48 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:43 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 37 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 1910 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:44 mri_label2label N 12 e 3.58 S 0.23 U 3.34 P 99% M 516968 F 0 R 151032 W 0 c 27 w 3 I 176 O 120 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:47 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 292 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2393 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:47 mri_label2label N 12 e 3.60 S 0.19 U 3.40 P 99% M 517020 F 0 R 151039 W 0 c 19 w 2 I 200 O 184 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:51 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 496 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 4373 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:51 mri_label2label N 12 e 3.86 S 0.19 U 3.67 P 99% M 517084 F 0 R 151071 W 0 c 34 w 3 I 360 O 320 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:55 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 560 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 3479 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:55 mri_label2label N 12 e 3.73 S 0.19 U 3.54 P 99% M 517052 F 0 R 151059 W 0 c 31 w 3 I 272 O 264 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:55:58 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 198 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1484 mri_label2label: Done @#@FSTIME 2023:09:02:20:55:58 mri_label2label N 12 e 3.58 S 0.20 U 3.37 P 99% M 516992 F 0 R 151025 W 0 c 19 w 3 I 128 O 120 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:02 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 82 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1088 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:02 mri_label2label N 12 e 3.44 S 0.17 U 3.26 P 99% M 516852 F 0 R 151019 W 0 c 17 w 2 I 96 O 80 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:05 mri_label2label N 12 1.00 1.00 1.00 mris_label2annot --s sub-032336_troubleshoot2_dup --ctab /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt Number of ctab entries 9 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label cmdline mris_label2annot --s sub-032336_troubleshoot2_dup --ctab /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc subject sub-032336_troubleshoot2_dup hemi lh SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects ColorTable /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig 1 1376057 FG1 2 16711935 FG2 3 16711680 FG3 4 1705837 FG4 5 25600 hOc1 6 255 hOc2 7 16776960 hOc3v 8 65535 hOc4v Mapping unhit to unknown Found 104937 unhit vertices Writing annot to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.mpm.vpnl.annot @#@FSTIME 2023:09:02:20:56:05 mris_label2annot N 26 e 0.51 S 0.05 U 0.45 P 98% M 137680 F 7 R 37535 W 0 c 5 w 6 I 984 O 1848 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:06 mris_label2annot N 26 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 11 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1025 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:06 mri_label2label N 12 e 3.48 S 0.18 U 3.30 P 100% M 516984 F 0 R 151019 W 0 c 16 w 3 I 96 O 64 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:09 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2125 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:10 mri_label2label N 12 e 3.60 S 0.17 U 3.42 P 99% M 517024 F 0 R 151037 W 0 c 25 w 3 I 192 O 128 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:13 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 3 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1507 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:13 mri_label2label N 12 e 3.53 S 0.20 U 3.32 P 99% M 517000 F 0 R 151027 W 0 c 24 w 2 I 136 O 80 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:17 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 13 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2009 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:17 mri_label2label N 12 e 3.64 S 0.16 U 3.47 P 99% M 517020 F 0 R 151037 W 0 c 15 w 2 I 184 O 112 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:20 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 7 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2326 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:20 mri_label2label N 12 e 3.72 S 0.21 U 3.50 P 99% M 516904 F 0 R 151037 W 0 c 21 w 2 I 208 O 120 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:24 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 10 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1559 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:24 mri_label2label N 12 e 3.52 S 0.19 U 3.32 P 99% M 517004 F 0 R 151028 W 0 c 19 w 3 I 144 O 88 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:28 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 29 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7064 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:28 mri_label2label N 12 e 4.22 S 0.17 U 4.05 P 99% M 517324 F 0 R 151126 W 0 c 23 w 2 I 616 O 344 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:32 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 96 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 2008 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:32 mri_label2label N 12 e 3.59 S 0.19 U 3.39 P 99% M 517012 F 0 R 151034 W 0 c 26 w 3 I 168 O 128 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:35 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 230 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1381 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:35 mri_label2label N 12 e 3.47 S 0.22 U 3.25 P 99% M 516988 F 0 R 151017 W 0 c 23 w 3 I 104 O 112 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:39 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 437 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 3842 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:39 mri_label2label N 12 e 3.92 S 0.22 U 3.69 P 99% M 517068 F 0 R 151063 W 0 c 15 w 2 I 304 O 288 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:43 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 589 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 3923 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:43 mri_label2label N 12 e 3.80 S 0.20 U 3.59 P 99% M 517064 F 0 R 151067 W 0 c 23 w 3 I 296 O 296 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:47 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 15 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 528 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:47 mri_label2label N 12 e 3.38 S 0.20 U 3.18 P 99% M 516840 F 0 R 151008 W 0 c 24 w 2 I 48 O 40 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:50 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 21 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 491 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:50 mri_label2label N 12 e 3.43 S 0.18 U 3.25 P 99% M 516836 F 0 R 151008 W 0 c 11 w 2 I 48 O 40 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:54 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 117995 Number of reverse mapping hits = 45 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 495 mri_label2label: Done @#@FSTIME 2023:09:02:20:56:54 mri_label2label N 12 e 3.43 S 0.17 U 3.25 P 99% M 516704 F 0 R 151010 W 0 c 24 w 2 I 48 O 40 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:57 mri_label2label N 12 1.00 1.00 1.00 mris_label2annot --s sub-032336_troubleshoot2_dup --hemi lh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label cmdline mris_label2annot --s sub-032336_troubleshoot2_dup --hemi lh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc subject sub-032336_troubleshoot2_dup hemi lh SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects ColorTable /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 83585 unhit vertices Writing annot to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.BA_exvivo.annot @#@FSTIME 2023:09:02:20:56:57 mris_label2annot N 38 e 0.53 S 0.03 U 0.49 P 99% M 138196 F 0 R 37598 W 0 c 6 w 2 I 8 O 1848 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:58 mris_label2annot N 38 1.00 1.00 1.00 mris_label2annot --s sub-032336_troubleshoot2_dup --hemi lh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label cmdline mris_label2annot --s sub-032336_troubleshoot2_dup --hemi lh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc subject sub-032336_troubleshoot2_dup hemi lh SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects ColorTable /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 97440 unhit vertices Writing annot to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/lh.BA_exvivo.thresh.annot @#@FSTIME 2023:09:02:20:56:58 mris_label2annot N 38 e 0.51 S 0.04 U 0.46 P 99% M 137944 F 0 R 37544 W 0 c 5 w 1 I 0 O 1848 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:56:58 mris_label2annot N 38 1.00 1.00 1.00 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-032336_troubleshoot2_dup lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 182481 Total vertex volume 182309 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 1000 592 1836 2.312 0.402 0.120 0.026 13 0.9 BA1_exvivo 3522 2357 5328 2.186 0.395 0.112 0.024 31 3.4 BA2_exvivo 904 599 859 1.740 0.339 0.118 0.026 6 1.0 BA3a_exvivo 2167 1443 3054 1.979 0.417 0.117 0.023 21 2.3 BA3b_exvivo 1202 704 2103 2.584 0.456 0.096 0.023 8 1.0 BA4a_exvivo 1102 675 1613 2.461 0.406 0.091 0.021 5 0.9 BA4p_exvivo 7003 4581 12235 2.344 0.441 0.117 0.024 70 7.2 BA6_exvivo 2047 1437 3643 2.343 0.441 0.125 0.029 19 2.5 BA44_exvivo 2847 1950 4863 2.213 0.381 0.129 0.030 36 3.4 BA45_exvivo 3063 2135 4257 1.895 0.405 0.131 0.034 37 3.9 V1_exvivo 6570 4303 9433 1.933 0.502 0.138 0.035 99 8.7 V2_exvivo 1574 1041 2465 2.149 0.470 0.122 0.028 19 1.7 MT_exvivo 785 530 1747 2.836 0.675 0.119 0.024 6 0.8 perirhinal_exvivo 624 378 1347 2.533 0.826 0.091 0.023 5 0.5 entorhinal_exvivo @#@FSTIME 2023:09:02:20:56:58 mris_anatomical_stats N 12 e 3.30 S 0.15 U 3.14 P 100% M 415648 F 0 R 120290 W 0 c 18 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:01 mris_anatomical_stats N 12 1.00 1.00 1.00 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-032336_troubleshoot2_dup lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 182481 Total vertex volume 182309 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 648 354 1165 2.333 0.382 0.125 0.027 11 0.6 BA1_exvivo 1427 934 2330 2.234 0.394 0.109 0.023 14 1.3 BA2_exvivo 745 495 645 1.673 0.266 0.119 0.025 5 0.8 BA3a_exvivo 1262 843 1578 1.789 0.339 0.103 0.020 8 1.1 BA3b_exvivo 1174 685 1971 2.601 0.472 0.093 0.022 7 0.9 BA4a_exvivo 934 575 1326 2.406 0.395 0.090 0.020 4 0.8 BA4p_exvivo 3882 2454 6601 2.320 0.485 0.113 0.024 38 3.9 BA6_exvivo 1427 985 2483 2.308 0.459 0.120 0.028 13 1.7 BA44_exvivo 1279 858 2430 2.328 0.346 0.134 0.030 18 1.5 BA45_exvivo 3250 2258 4595 1.909 0.424 0.130 0.034 40 4.1 V1_exvivo 3390 2250 4688 1.874 0.476 0.143 0.034 51 4.3 V2_exvivo 393 261 585 2.253 0.454 0.128 0.026 4 0.4 MT_exvivo 353 235 763 2.855 0.681 0.137 0.027 3 0.4 perirhinal_exvivo 391 253 814 2.578 0.563 0.082 0.015 1 0.3 entorhinal_exvivo @#@FSTIME 2023:09:02:20:57:02 mris_anatomical_stats N 12 e 3.32 S 0.17 U 3.15 P 100% M 415772 F 0 R 123231 W 0 c 14 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:05 mris_anatomical_stats N 12 1.00 1.00 1.00 #-------------------------------------------- #@# BA_exvivo Labels rh Sat Sep 2 20:57:05 EDT 2023 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 54 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4016 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:05 mri_label2label N 12 e 4.06 S 0.21 U 3.85 P 99% M 524424 F 0 R 153152 W 0 c 25 w 7 I 16160 O 232 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:09 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 57 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 6744 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:09 mri_label2label N 12 e 4.39 S 0.18 U 4.21 P 99% M 524648 F 0 R 153200 W 0 c 22 w 3 I 520 O 360 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:13 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 28 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4008 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:13 mri_label2label N 12 e 3.93 S 0.19 U 3.73 P 99% M 524424 F 0 R 153152 W 0 c 24 w 2 I 312 O 208 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:17 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 64 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4586 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:17 mri_label2label N 12 e 4.12 S 0.19 U 3.92 P 99% M 524444 F 0 R 153162 W 0 c 26 w 3 I 352 O 256 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:21 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 56 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 5803 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:21 mri_label2label N 12 e 4.31 S 0.17 U 4.13 P 99% M 524488 F 0 R 153184 W 0 c 28 w 2 I 440 O 320 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:26 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 36 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4509 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:26 mri_label2label N 12 e 4.12 S 0.21 U 3.90 P 99% M 524448 F 0 R 153162 W 0 c 23 w 3 I 344 O 240 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:30 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 128 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 12384 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:30 mri_label2label N 12 e 4.95 S 0.19 U 4.76 P 99% M 524976 F 0 R 153300 W 0 c 23 w 2 I 936 O 664 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:35 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 143 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7055 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:35 mri_label2label N 12 e 4.50 S 0.22 U 4.27 P 99% M 524656 F 0 R 153206 W 0 c 15 w 4 I 528 O 376 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:39 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 470 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 5825 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:39 mri_label2label N 12 e 4.26 S 0.18 U 4.08 P 99% M 524348 F 0 R 153180 W 0 c 23 w 3 I 416 O 368 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:44 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 619 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 5346 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:44 mri_label2label N 12 e 4.05 S 0.17 U 3.88 P 99% M 524456 F 0 R 153172 W 0 c 25 w 3 I 376 O 384 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:48 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 963 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 8979 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:48 mri_label2label N 12 e 4.47 S 0.20 U 4.26 P 99% M 524700 F 0 R 153232 W 0 c 19 w 3 I 640 O 616 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:52 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 391 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2323 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:52 mri_label2label N 12 e 3.68 S 0.20 U 3.47 P 99% M 524356 F 0 R 153123 W 0 c 26 w 3 I 160 O 184 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:57:56 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 26 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1064 mri_label2label: Done @#@FSTIME 2023:09:02:20:57:56 mri_label2label N 12 e 3.54 S 0.21 U 3.32 P 99% M 524200 F 0 R 153099 W 0 c 25 w 3 I 96 O 72 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:00 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 28 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 780 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:00 mri_label2label N 12 e 3.56 S 0.21 U 3.34 P 99% M 524184 F 0 R 153096 W 0 c 17 w 2 I 72 O 56 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:03 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 70 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 611 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:03 mri_label2label N 12 e 3.49 S 0.18 U 3.30 P 99% M 524180 F 0 R 153092 W 0 c 23 w 3 I 56 O 48 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:07 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 144 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 865 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:07 mri_label2label N 12 e 3.50 S 0.21 U 3.28 P 99% M 524184 F 0 R 153094 W 0 c 16 w 4 I 72 O 72 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:10 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 105 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1628 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:10 mri_label2label N 12 e 3.59 S 0.19 U 3.39 P 99% M 524212 F 0 R 153109 W 0 c 23 w 3 I 144 O 112 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:14 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 196 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 1782 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:14 mri_label2label N 12 e 3.61 S 0.17 U 3.44 P 99% M 524216 F 0 R 153114 W 0 c 20 w 3 I 152 O 128 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:17 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 473 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 4140 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:17 mri_label2label N 12 e 3.92 S 0.20 U 3.71 P 99% M 524420 F 0 R 153147 W 0 c 26 w 3 I 328 O 296 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:21 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 391 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3110 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:21 mri_label2label N 12 e 3.84 S 0.21 U 3.62 P 99% M 524384 F 0 R 153134 W 0 c 31 w 3 I 248 O 224 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:25 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 224 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1452 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:25 mri_label2label N 12 e 3.56 S 0.19 U 3.36 P 99% M 524200 F 0 R 153108 W 0 c 21 w 3 I 112 O 120 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:29 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 142 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1167 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:29 mri_label2label N 12 e 3.53 S 0.16 U 3.36 P 99% M 524196 F 0 R 153105 W 0 c 24 w 3 I 96 O 96 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:32 mri_label2label N 12 1.00 1.00 1.00 mris_label2annot --s sub-032336_troubleshoot2_dup --ctab /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt Number of ctab entries 9 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label cmdline mris_label2annot --s sub-032336_troubleshoot2_dup --ctab /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc subject sub-032336_troubleshoot2_dup hemi rh SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects ColorTable /home/aiisc/Downloads/freesurfer/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig 1 1376057 FG1 2 16711935 FG2 3 16711680 FG3 4 1705837 FG4 5 25600 hOc1 6 255 hOc2 7 16776960 hOc3v 8 65535 hOc4v Mapping unhit to unknown Found 108840 unhit vertices Writing annot to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.mpm.vpnl.annot @#@FSTIME 2023:09:02:20:58:32 mris_label2annot N 26 e 0.52 S 0.06 U 0.46 P 99% M 141416 F 0 R 38537 W 0 c 5 w 2 I 0 O 1896 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:33 mris_label2annot N 26 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 14 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 890 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:33 mri_label2label N 12 e 3.50 S 0.19 U 3.30 P 99% M 524192 F 0 R 153100 W 0 c 30 w 3 I 80 O 56 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:36 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 10 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2698 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:36 mri_label2label N 12 e 3.76 S 0.21 U 3.54 P 99% M 524356 F 0 R 153128 W 0 c 21 w 3 I 240 O 136 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:40 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 5 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1703 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:40 mri_label2label N 12 e 3.83 S 0.18 U 3.64 P 99% M 524224 F 0 R 153113 W 0 c 14 w 3 I 152 O 88 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:44 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 18 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2201 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:44 mri_label2label N 12 e 3.75 S 0.22 U 3.52 P 99% M 524236 F 0 R 153119 W 0 c 21 w 3 I 192 O 128 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:48 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 15 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1403 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:48 mri_label2label N 12 e 3.57 S 0.21 U 3.35 P 99% M 524256 F 0 R 153111 W 0 c 21 w 3 I 120 O 80 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:51 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 18 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1507 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:51 mri_label2label N 12 e 3.59 S 0.18 U 3.40 P 99% M 524216 F 0 R 153110 W 0 c 23 w 2 I 136 O 88 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:58:55 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 71 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7030 mri_label2label: Done @#@FSTIME 2023:09:02:20:58:55 mri_label2label N 12 e 4.49 S 0.20 U 4.29 P 99% M 524516 F 0 R 153201 W 0 c 22 w 3 I 592 O 376 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:00 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 42 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1054 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:00 mri_label2label N 12 e 3.58 S 0.20 U 3.38 P 99% M 524200 F 0 R 153099 W 0 c 15 w 2 I 88 O 64 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:03 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 12 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1190 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:03 mri_label2label N 12 e 3.59 S 0.17 U 3.41 P 99% M 524204 F 0 R 153098 W 0 c 20 w 3 I 104 O 64 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:07 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 409 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 3641 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:07 mri_label2label N 12 e 3.85 S 0.20 U 3.64 P 99% M 524400 F 0 R 153142 W 0 c 19 w 2 I 280 O 264 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:11 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 523 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 3960 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:11 mri_label2label N 12 e 3.88 S 0.22 U 3.65 P 99% M 524408 F 0 R 153147 W 0 c 20 w 3 I 296 O 288 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:15 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 54 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 322 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:15 mri_label2label N 12 e 3.42 S 0.18 U 3.23 P 99% M 524168 F 0 R 153087 W 0 c 28 w 2 I 24 O 32 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:18 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 18 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 712 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:18 mri_label2label N 12 e 3.52 S 0.21 U 3.30 P 99% M 524188 F 0 R 153093 W 0 c 14 w 3 I 64 O 48 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:22 mri_label2label N 12 1.00 1.00 1.00 mri_label2label --srcsubject fsaverage --srclabel /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-032336_troubleshoot2_dup --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /home/aiisc/Downloads/freesurfer/subjects/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-032336_troubleshoot2_dup trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects FREESURFER_HOME /home/aiisc/Downloads/freesurfer Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /home/aiisc/Downloads/freesurfer/subjects/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white Reading target registration /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 121299 Number of reverse mapping hits = 12 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 303 mri_label2label: Done @#@FSTIME 2023:09:02:20:59:22 mri_label2label N 12 e 3.42 S 0.21 U 3.21 P 99% M 524172 F 0 R 153088 W 0 c 19 w 2 I 32 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:25 mri_label2label N 12 1.00 1.00 1.00 mris_label2annot --s sub-032336_troubleshoot2_dup --hemi rh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label cmdline mris_label2annot --s sub-032336_troubleshoot2_dup --hemi rh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc subject sub-032336_troubleshoot2_dup hemi rh SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects ColorTable /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 86720 unhit vertices Writing annot to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.BA_exvivo.annot @#@FSTIME 2023:09:02:20:59:25 mris_label2annot N 38 e 0.55 S 0.04 U 0.51 P 100% M 141804 F 0 R 38713 W 0 c 7 w 1 I 0 O 1904 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:26 mris_label2annot N 38 1.00 1.00 1.00 mris_label2annot --s sub-032336_troubleshoot2_dup --hemi rh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label cmdline mris_label2annot --s sub-032336_troubleshoot2_dup --hemi rh --ctab /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname aiisc-OptiPlex-3050 machine x86_64 user aiisc subject sub-032336_troubleshoot2_dup hemi rh SUBJECTS_DIR /home/aiisc/Downloads/freesurfer/subjects ColorTable /home/aiisc/Downloads/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 101845 unhit vertices Writing annot to /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/label/rh.BA_exvivo.thresh.annot @#@FSTIME 2023:09:02:20:59:26 mris_label2annot N 38 e 0.52 S 0.05 U 0.47 P 99% M 141676 F 0 R 38483 W 0 c 6 w 1 I 0 O 1904 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:26 mris_label2annot N 38 1.00 1.00 1.00 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-032336_troubleshoot2_dup rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 191038 Total vertex volume 190849 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 907 459 1360 2.236 0.413 0.127 0.030 16 1.1 BA1_exvivo 2781 1758 3778 2.141 0.376 0.101 0.019 21 2.3 BA2_exvivo 1011 672 911 1.696 0.315 0.132 0.027 9 1.2 BA3a_exvivo 1807 1157 2290 1.785 0.382 0.100 0.017 13 1.5 BA3b_exvivo 1479 832 2400 2.501 0.457 0.086 0.019 8 1.2 BA4a_exvivo 1187 753 1693 2.297 0.371 0.089 0.017 6 0.8 BA4p_exvivo 6654 4254 11424 2.387 0.463 0.115 0.024 61 6.9 BA6_exvivo 2794 1886 4937 2.399 0.406 0.126 0.033 31 3.9 BA44_exvivo 3612 2504 6264 2.293 0.444 0.132 0.030 43 4.6 BA45_exvivo 3255 2224 4509 1.881 0.482 0.134 0.035 43 4.5 V1_exvivo 6112 4050 9719 2.118 0.493 0.146 0.035 89 8.5 V2_exvivo 2083 1393 3374 2.214 0.434 0.127 0.028 27 2.3 MT_exvivo 363 248 608 2.394 0.544 0.094 0.015 2 0.3 perirhinal_exvivo 534 356 1621 2.988 0.795 0.087 0.019 2 0.4 entorhinal_exvivo @#@FSTIME 2023:09:02:20:59:26 mris_anatomical_stats N 12 e 3.38 S 0.16 U 3.22 P 100% M 426584 F 0 R 123508 W 0 c 13 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:30 mris_anatomical_stats N 12 1.00 1.00 1.00 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-032336_troubleshoot2_dup rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/mri/wm.mgz... reading input surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... reading input pial surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.pial... reading input white surface /home/aiisc/Downloads/freesurfer/subjects/sub-032336_troubleshoot2_dup/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 191038 Total vertex volume 190849 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1227172 mm^3 (det: 1.587476 ) 563 272 875 2.334 0.340 0.116 0.026 8 0.6 BA1_exvivo 1534 929 2216 2.217 0.349 0.092 0.017 10 1.1 BA2_exvivo 886 603 755 1.653 0.271 0.133 0.025 7 1.0 BA3a_exvivo 1406 913 1599 1.690 0.344 0.092 0.015 8 1.0 BA3b_exvivo 913 516 1507 2.532 0.496 0.090 0.021 5 0.8 BA4a_exvivo 1003 620 1382 2.333 0.344 0.085 0.017 4 0.7 BA4p_exvivo 4325 2730 7345 2.347 0.479 0.112 0.023 39 4.2 BA6_exvivo 758 533 1494 2.378 0.496 0.147 0.041 10 1.5 BA44_exvivo 756 560 1538 2.462 0.314 0.137 0.034 11 1.0 BA45_exvivo 3075 2112 4248 1.882 0.474 0.131 0.034 38 4.0 V1_exvivo 3385 2259 5386 2.084 0.479 0.155 0.037 56 5.1 V2_exvivo 288 200 415 2.064 0.315 0.140 0.033 4 0.3 MT_exvivo 31 21 40 2.366 0.268 0.101 0.016 0 0.0 perirhinal_exvivo 531 350 1274 2.773 0.690 0.082 0.015 2 0.3 entorhinal_exvivo @#@FSTIME 2023:09:02:20:59:30 mris_anatomical_stats N 12 e 3.40 S 0.17 U 3.23 P 99% M 426720 F 0 R 126530 W 0 c 19 w 1 I 0 O 24 L 1.00 1.00 1.00 @#@FSLOADPOST 2023:09:02:20:59:33 mris_anatomical_stats N 12 1.00 1.00 1.00 Started at Sat Sep 2 17:40:37 EDT 2023 Ended at Sat Sep 2 20:59:33 EDT 2023 #@#%# recon-all-run-time-hours 3.316 recon-all -s sub-032336_troubleshoot2_dup finished without error at Sat Sep 2 20:59:33 EDT 2023