Sorry Bruce,

I prefer sending it to your email directly, then if you want to make it available to the other memebrs, there is not problem at all...

Kind regards,

Rosalia

2017-11-21 18:17 GMT+01:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu>:

tar and gzip the entire subject dir and upload it following these instructions:

https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange

On Tue, 21 Nov 2017, Rosalia Dacosta Aguayo wrote:

 Hi Bruce,

Thank you for answering.

Not, it is not a bug...in fact recon-all...-all had not problems. Just I was
looking at the outputs...and as I am running FreeSurfer for my first time I
wanted to ask about if this was a problem or I can go on....

Where I should upload the subject and which files? I mean, in order to do
not overload the mail list...

Kind regards,
Rosalia

2017-11-21 18:09 GMT+01:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu>:
      hmmm, that is odd looking. Can you upload that subject so we can
      see if
      it is just a display bug or not?
      On Tue, 21 Nov 2017, Rosalia Dacosta Aguayo
      wrote:

      > Dear FreeSurfer Developers,
      >
      > I am checking the OutputData_freeview after running recon-all
      following your
      > tutorial:
      >
      https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview
      >
      > I have loaded T1.mgz, wm.mgz, brainmask.mgz and aseg.mgz, and
      then the
      > surfaces: rh.pial, rh.white, lh.pial and lh.white.
      >
      > In general, I did not see any problem...but when I wanted to
      see the
      > surface&mesh with vertices I saw something estrange I do not
      know if it is a
      > problem or it is normal (see the vertices in the temporal pole
      in grey
      > scale)...as this is my first run with FreeSurfer. I attach you
      the image.
      >
      > 1. FreeSurfer version:
      > freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
      > 2. Platform: CentOS release 6.7
      > 3. uname -a: Linux rosalia-PORTEGE-Z930 4.4.0-98-generic
      #121-Ubuntu SMP Tue
      > Oct 10 14:24:03 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
      > 4. Recon-all.log; see attached (although it ended without
      errors)
      >
      > I haven't come across this error in my searches, but I may be
      using the
      > wrong key terms. Would anyone be able to point me in the right
      direction or
      > trouble-shoot fixing this?
      >
      > Thank you for your time,
      > Rosalia
      >
      >
      >
      >
      >
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