Stefano, you don't have write permission into /Applications/freesurfer/subjects.
Give yourself write permissions or use another folder. Another folder is probably better.
doug

On 3/2/13 5:10 AM, stdp82@virgilio.it wrote:

Hi list,

I'm trying to run mris_preproc.

I have my recon-all output in /Application/freesurfer/subjects/subject_prova/folder_for_each_subj

The file.fsgd is in /Application/freesurfer/subjects directory and it is called as prova.fsgd.

When I run:

mris_preproc --fsgd /Applications/freesurfer/subjects/prova.fsgd --target fsaverage --hemi lh \ --meas thickness --out /Applications/freesurfer/subjects/lh.thickness.00.mgh

I obtain:

nsubjects = 37

tmpdir is /Applications/freesurfer/subjects/tmp.mris_preproc.3476

/Applications/freesurfer/subjects

mkdir: /Applications/freesurfer/subjects/tmp.mris_preproc.3476: Permission denied

ERROR: creating /Applications/freesurfer/subjects/tmp.mris_preproc.3476

To check it, I also attacked the .fsgd file.

Thank you very much,

Stefano
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