The release notes for 7.0.0 claim that the -make option is "Gone" from recon-all.  This option, however, is still available and does not seem to fail.

 

I am running several thousand data sets on a cluster through Freesurfer 7.1.0, and periodically the process fails for some subjects. In the past the "recon-all -make all" feature was a very convenient way to complete freesurfer runs that were terminated early for some unknown reason

 

Q1)  should "recon-all -make all" be avoided for FreeSurfer 7.1.0?

Q2) is there an alternate way to "continue form the point where results are missing" in the pipeline?

 

Thanks,
Hans