Hi Douglas,

 

Here are the rotated images

 

 

-----Original Message-----
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Greve, Douglas N.,Ph.D.
Sent: 14 February 2019 16:36
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Sections of Temporal Lobe not included

 

hard to tell from those images what is happening. Can you send an image

with an arrow pointing to where the problem is? Putting the brain

right-side-up will be helpful as well

 

On 2/14/19 8:12 AM, John Mc Fadden wrote:

> 

>         External Email - Use Caution

> 

> Hi,

> 

> I have processed two subjects data twice, once using T1w only and once

> including FLAIR. I haven’t been able to achieve good coverage of the

> temporal lobe (see images) with either method for one patient,

> slightly better performance with the other. Is there anything else I

> could do to avoid manual segmentation? Thanks for any help.

> 

> All the best

> 

> John

> 

> 

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