Hi,

 

I’m running tracula and having some issues.

Using FS5.3, I have run successfully (without errors) ‘recon-all –all’,  then  ‘trac-all –prep –c dmrirc’.

 

I then get an error (below) running ‘trac-all –bep –c dmrirc’.

The ‘dmri’ directory is generated from the –prop step above.

 

[jimalex@login01 freesurfer]$ trac-all -bedp -c dmrirc

INFO: SUBJECTS_DIR is /scratch/jimalex/freesurfer

INFO: Diffusion root is /scratch/jimalex/freesurfer

Actual FREESURFER_HOME /act/freesurfer-5.3.0-HCP

INFO: FreeSurfer build stamps do not match

Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0-HCP

INFO: current FREESURFER_HOME does not match that of previous processing.

    Current: /act/freesurfer-5.3.0-HCP

    Previous: /data/gizmo/data1/freesurfer5.3

WARN: Running FSL's bedbost locally - this might take a while

WARN: It is recommended to run this step on a cluster

bedpostx_mgh -n 2 /scratch/jimalex/freesurfer/neo321e_chpc/dmri

subjectdir is /scratch/jimalex/freesurfer/neo321e_chpc/dmri

/scratch/jimalex/freesurfer/neo321e_chpc/dmri/data not found

[jimalex@login01 freesurfer]$