Hi Dorsa

you need to give us more details. What was your reslicing command line? And the screen output?

Bruce

On Mon, 25 Jul 2016, Dorsa Haji Ghaffari wrote:

Hi,

I re-sliced my left thalamus so that the size and number of slices correspond with the original MRI, but when I open it in freeview, it shows an extra part(
like a cube) on the bottom of the image ( I have attached the  mask). do you have any idea how to solve that? 
Also how can I make sure that the position and size of the thalamus makes sense since the thalamus mask has a different slice size and number than the
original mri?

Thank you

Dorsa

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