Cheers,

Dr Kevin Aquino

Research fellow,

Sir Peter Mansfield Magnetic Resonance Center, The University of Nottingham.

Honorary Research Fellow
School of Physics, Faculty of Science, University of Sydney

E Kevin.aquino@nottingham.ac.uk, aquino@physics.usyd.edu.au | W www.physics.usyd.edu.au/~aquino/

----------------------------------------------

The brain is a wonderful organ. It starts working the moment you get up and does not stop until you get into the office.
-
Robert Frost

CRICOS 00026A

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On Fri, Oct 2, 2015 at 1:42 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Kevin

I'm not clear on what you need. Would mri_surf2vol --fillribbon do what you want? I don't really know what else "voxelize" means

cheers
Bruce

On Fri, 2 Oct 2015, Kevin Aquino wrote:

Hi all,
I am trying to "voxelize" the cortical surfaces generated in freesurfer and
I am a little stuck.

I have been using mris_surf2vol with the --mask option however this
generates a very speckled representation of the cortical surface on the
voxels. What I would prefer would be the level sets of the cortical surface
interpolated onto voxels, even if they are at a different resolution that
could be enough. Is this possible with any of the available commands?

I also went down the route of mris_volmask however, this generates the
cortical ribbon, which is something that I don't need.

Cheers,

Dr Kevin Aquino
Research fellow,
Sir Peter Mansfield Magnetic Imaging Center,
School of Physics & astronomy, The University of Nottingham.

Honorary Research Fellow
School of Physics, Faculty of Science, University of Sydney.

E Kevin.aquino@nottingham.ac.uk, aquino@physics.usyd.edu.au | W
www.physics.usyd.edu.au/~aquino/

----------------------------------------------

The brain is a wonderful organ. It starts working the moment you get up and
does not stop until you get into the office.
-
Robert Frost

CRICOS 00026A
This email plus any attachments to it are confidential. Any unauthorised use
is strictly prohibited. If you receive this email in error, please delete it
and any attachments.

Please think of our environment and only print this e-mail if necessary.

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