Hi Freesurfers,<div><br></div><div>I have another quintessentially beginner&#39;s problem....</div><div><br></div><div>I ran 5 scans through the entire pipeline (-autorecon1 -autorecon2 and -autorecon2 -autorecon-3)</div><div>
<br></div><div>when I check the output going</div><div><br></div><div>tksurfer [name_of_folder_with_dcm_files] rh (or lh) inflated</div><div><br></div><div>and then</div><div><br></div><div><span class="Apple-style-span">tkmedit </span>[name_of_folder_with_dcm_files]<span class="Apple-style-span"> norm.mgz -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt</span></div>
<div><span class="Apple-style-span"><br></span></div><div><span class="Apple-style-span">the scans look all the same....it is like the last scan I processed was overwritten on the previous ones....does it make sense?</span></div>
<div><span class="Apple-style-span"><br></span></div><div><span class="Apple-style-span">thank you very much,</span></div><div><span class="Apple-style-span"><br></span></div><div><span class="Apple-style-span">Pietro<br clear="all">
<div><br></div>-- <br><span style="border-collapse:collapse;color:rgb(34,34,34);font-size:13px"><div style="font-family:arial,sans-serif"><span><font color="#222222">Pietro De Rossi</font></span>, MD</div><div style="font-family:arial,sans-serif">
-------------------------------------<br><span style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">Sapienza Universitą di Roma, Facoltą di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant&#39;Andrea, Via di Grottarossa 1035-1039, 00189 Roma<br>
</span><span lang="EN-GB" style="font-size:6.5pt;font-family:&#39;Arial Narrow&#39;"><br></span><span lang="EN-GB" style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy</span></div>
</span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><br>
</span></div>Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA</span><br>

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