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Dear
FreeSurfer experts,
I have been trying
to manually correct a wm volume to further fix the wm and pial surfaces, but when I ran
recon-all -subjid SUBJxxx -autorecon2-wm -autorecon3 nothing
happened to the surfaces. I found an unknown-args.txt file under scripts, and it seems the autorecon2-wm flag is not recognized.
How can I create new
surfaces and overcome this issue?
Here
attached is the complete recon-all log file from the beginning, including all steps attempted. I would be very glad if you could help me overcoming this error to include as much subjects as possible in my project.
Best
regards,
Fernanda
Hansen P. de Moraes
Pesquisadora
no Instituto de Física da UFRJ | metaBIO (IF-UFRJ)
Doutora em
Ciências Médicas | Instituto D'Or de Pesquisa e Ensino