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Hello,

 

I have a set of binary mask files that I’m trying to assign different values to. Currently I’m doing:

 

mri_binarize --i sub001.nii.gz --o final_sub001.nii.gz --replace -117 2

mri_binarize --I sub002.nii.gz --o final_sub002.nii.gz --replace -128 2

 

The problem I’m having is that the values (V1) for each binary mask is not constant. For example, for one participant the values may be -117 whereas the values are -128 for another participant. Is there a way to set a range for the --replace option so that I can loop it through the subjects rather than having to do this command for each one separately? Any suggestions would be greatly appreciated!

 

Thank you,

Da-Yea

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