On Sunday, May 12, 2013, Bruce Fischl wrote:

Hi Jonathan

you don't need to register it if it's shown properly in tkmedit or freeview. Can you tell us more about what you are trying to do?
Bruce

On Sun, 12 May 2013, Jonathan DuBois wrote:

Hi Bruce,
Thanks for the quick response. The label is a manually traced area of the
cortex. It is in subject scanner space and has a single value, so it
probably would not work with bbregister. I can load it in tkmedit as a
segmentation and the alignment is correct. I attached a screenshot. Is there
a way to select the values greater than zero in tkmedit and save as a label
that could be used in vol2surf? I have other labels that are larger so I
would prefer not to retrace them if possible.

Inline image 2
Best,
Jonathan

On Sun, May 12, 2013 at 10:11 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
Hi Jonathan

what is the label? What space is it in? If it has gray/white
contrast you could try bbregister.

cheers
Bruce
On Sat, 11 May 2013, Jonathan DuBois wrote:

Hi Freesurfer Experts,
I have a binary volume label in subject space that I
converted from MINC to MGZ. I would like to register
it to
the surface of that subject as a flat label. I
thought I would be able to do so with mri_vol2surf
but I am not
sure how to generate the required registration file.
Is that the correct command, and if so, which
registration
file should I use?

Thanks
Jonathan

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