Hi there,

 

I would like to show activation map in the thalamus, caudate nucleus, and hippocampus.

 

activation.mgh : activation map in the subcortical areas

mask.mgh: including the thalamus, caudate nucleus, and hippocampus

 

How do I make the activation map in the thalamus, caudate nucleus, and hippocampus?

Do I use "mri_binarize" or "mri_convert"?

mri_binarize  --i activation.mgh --mask mask.mgh --0 result.mgh

 

Best wishes

Gwang-Won Kim