I'm trying to segment a pre-processed 3D PSIR volume.

After few minutes Freesurfer return the following error:

mritotal -verbose -debug -clobber -modeldir /Applications/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.12174/src.mnc transforms/talairach.auto.xfm

Can't locate shellwords.pl in @INC (@INC contains: /Applications/freesurfer/mni/bin/../lib/mni_autoreg /Applications/freesurfer/mni/lib/../Library/Perl/Updates/5.10.0/darwin-thread-multi-2level /Applications/freesurfer/mni/lib/../Library/Perl/Updates/5.10.0 /Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 /Network/Library/Perl/5.18/darwin-thread-multi-2level /Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.2 /System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 /System/Library/Perl/Extras/5.18/darwin-thread-multi-2level /System/Library/Perl/Extras/5.18 .) at /Applications/freesurfer/mni/bin/mritotal line 460.

ERROR: mritotal failed, see transforms/talairach.log

I can't understand which could be the problem.

In attachment you'll find the log file.

Could you please help me?

Thanks a lot,

Domenico

___________________________________________

Eng. Domenico Aquino

Department of Neuroradiology

IRCCS Foundation Neurological Institute "Carlo Besta"

Via Celoria,11-20133 Milano

Phone: +39 02 23942472

Fax +39 02 23942543