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Silly error - there was an extra space in the line. 


Problem solved.


From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Brad Matushewski <bjmatush@uwo.ca>
Sent: Thursday, June 14, 2018 10:04:57 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] bash: mri/T1.mgz: Permission denied
 

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Not sure what happened here, but running Freesurfer on Ubuntu and not getting this error when trying to view volumes:


freeview -v \
mri/T1.mgz \
mri/brainmask.mgz \
mri/wm.mgz:visible=0 \
mri/aseg.mgz:colormap=lut:opacity=0.2 \
-f surf/lh.white:edgecolor=blue \
surf/rh.white:edgecolor=blue \
surf/rh.pial:edgecolor=red \
surf/lh.pial:edgecolor=red \
surf/rh.inflated:visible=0 \
surf/lh.inflated:visible=0



But it get the error:



bash: mri/T1.mgz: Permission denied



No idea why or how to fix this.  I have also tried other subjects but same thing.