That's strange. Is the file corrupted? Can you send the mc-sess back to me?

Balaji Goparaju wrote:
Hi, 

I copied the new version of the programs 

mktemplate-sess
surfsmooth-sess
stc-sess
mkbrainmask-sess
mc-sess

When i try to run preproc-sess -s LD-functional -fwhm 5 again, I get the following error, 

--------------------------------------------------------------
preproc-sess logfile is log/preproc-sess.log
--------------------------------------------------------------
instem   f 
mc   1     f fmc 
stc  0     fmc
sm   1 fmc fmcsm5 
mask 1   brain
LD-functional MC -----------------------------
Tue Jul 22 09:25:08 EDT 2008
/Users/balajigoparaju/Desktop/subjectdata
mc-sess -fstem f -fmcstem fmc -s LD-functional -d /Users/balajigoparaju/Desktop/subjectdata -fsd bold -new -update -no-inorm
----------------------------------------
/Applications/freesurfer/fsfast/bin/mc-sess: line 1: {rtf1macansicpg10000cocoartf824cocoasubrtf480: command not found
/Applications/freesurfer/fsfast/bin/mc-sess: line 2: syntax error near unexpected token `}'
/Applications/freesurfer/fsfast/bin/mc-sess: line 2: `{\fonttbl\f0\fswiss\fcharset77 Helvetica;}'
ERROR: mc-sess failed

And then i tried changing the mc-sess.backup file back to the mc-sess (Using the older version of mc-sess), and then the mc-sess and spatialsmooth-sess part of the preproc-sess program worked fine, but i get a similar error for the brainmask-sess program.

Tue Jul 22 09:19:12 EDT 2008
/Users/balajigoparaju/Desktop/subjectdata
mkbrainmask-sess -maskstem brain -fsd bold -s LD-functional -d /Users/balajigopa
raju/Desktop/subjectdata -update
----------------------------------------
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 1: {rtf1macansicpg100
00cocoartf824cocoasubrtf480: command not found
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: syntax error near 
unexpected token `}'
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: `{\fonttbl\f0\fswi
ss\fcharset77 Helvetica;}'
ERROR: mkbrainmask-sess failed

Thank you for any help.

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

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